Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060432.seq
         (660 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ342040-1|ABC69932.1|  822|Tribolium castaneum STIP protein.          23   1.7  
EF592537-1|ABQ95983.1|  593|Tribolium castaneum beta-N-acetylglu...    22   3.9  
AY453651-1|AAR89057.1|  199|Tribolium castaneum serrate protein.       22   3.9  
AJ307577-1|CAC84070.1|  301|Tribolium castaneum dachshund protein.     21   6.8  
EF592178-1|ABQ95974.1|  532|Tribolium castaneum tyrosine hydroxy...    21   9.0  

>DQ342040-1|ABC69932.1|  822|Tribolium castaneum STIP protein.
          Length = 822

 Score = 23.4 bits (48), Expect = 1.7
 Identities = 11/41 (26%), Positives = 19/41 (46%)
 Frame = -2

Query: 518 RESFNNVSSSLNERWDAGSSNGCRQGRSPLSEVDATVPTPP 396
           +E+F+     +N   + G   G ++  S LS  +   P PP
Sbjct: 695 KENFHTALEIMNRAVNIGQQPGAKESISYLSMENNAPPPPP 735


>EF592537-1|ABQ95983.1|  593|Tribolium castaneum
           beta-N-acetylglucosaminidase NAG2 protein.
          Length = 593

 Score = 22.2 bits (45), Expect = 3.9
 Identities = 11/40 (27%), Positives = 19/40 (47%), Gaps = 1/40 (2%)
 Frame = +1

Query: 175 PDL-VNDVHVSMSKNSRQPYCVSKEAGHKPVLNHGVLDVL 291
           PD  + ++ V + +   + YC+    G    +N  V DVL
Sbjct: 318 PDAGLGNLSVCIDQQPWRSYCIQPPCGQLNPINPNVFDVL 357


>AY453651-1|AAR89057.1|  199|Tribolium castaneum serrate protein.
          Length = 199

 Score = 22.2 bits (45), Expect = 3.9
 Identities = 6/11 (54%), Positives = 8/11 (72%)
 Frame = -3

Query: 271 DSALVCDQPPC 239
           +S  +CD PPC
Sbjct: 5   ESKAICDNPPC 15


>AJ307577-1|CAC84070.1|  301|Tribolium castaneum dachshund protein.
          Length = 301

 Score = 21.4 bits (43), Expect = 6.8
 Identities = 7/14 (50%), Positives = 11/14 (78%)
 Frame = -3

Query: 133 HPAPSHSSLNTPTL 92
           HPA +HS+L +P +
Sbjct: 121 HPAAAHSALLSPAM 134


>EF592178-1|ABQ95974.1|  532|Tribolium castaneum tyrosine
           hydroxylase protein.
          Length = 532

 Score = 21.0 bits (42), Expect = 9.0
 Identities = 7/24 (29%), Positives = 14/24 (58%)
 Frame = +1

Query: 196 HVSMSKNSRQPYCVSKEAGHKPVL 267
           H +   ++ +P C+ +  GH P+L
Sbjct: 346 HKNTPYHTPEPDCIHELLGHMPLL 369


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 140,889
Number of Sequences: 336
Number of extensions: 2912
Number of successful extensions: 8
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 17073220
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)