Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060432.seq
         (660 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF000196-2|AAC24253.1|  345|Caenorhabditis elegans Ribosomal pro...   115   3e-26
U80952-4|AAB38095.1|  662|Caenorhabditis elegans Hypothetical pr...    29   2.2  
U23523-9|AAC46564.1|  147|Caenorhabditis elegans Hypothetical pr...    29   3.9  
Z46828-1|CAA86856.1|  542|Caenorhabditis elegans Hypothetical pr...    28   5.1  
Z73970-2|CAA98243.2| 1560|Caenorhabditis elegans Hypothetical pr...    28   6.8  

>AF000196-2|AAC24253.1|  345|Caenorhabditis elegans Ribosomal
           protein, large subunitprotein 4 protein.
          Length = 345

 Score =  115 bits (276), Expect = 3e-26
 Identities = 54/91 (59%), Positives = 58/91 (63%)
 Frame = +3

Query: 255 QTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKPWRRWHXXXXXXXX 434
           Q SAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGG MFAP K +RRWH        
Sbjct: 60  QHSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGHMFAPLKVFRRWHRNVNIAQK 119

Query: 435 XXXXXXXXXXXXXXXXXQARGHIIERFPSFP 527
                            QARGH+I++    P
Sbjct: 120 RYAVSSAIAASGIPALLQARGHVIDQVAEVP 150



 Score = 56.4 bits (130), Expect = 2e-08
 Identities = 28/57 (49%), Positives = 38/57 (66%)
 Frame = +1

Query: 82  ARPLVSVYSEKSETVQGAAKPLPFVFKAPIRPDLVNDVHVSMSKNSRQPYCVSKEAG 252
           ARPLV+VY EK E  Q   + LP VF+ PIRPDLV+ +   + +N RQ + V+ +AG
Sbjct: 3   ARPLVTVYDEKYEATQSQIR-LPAVFRTPIRPDLVSFIADQVRRNRRQAHAVNTKAG 58



 Score = 49.2 bits (112), Expect = 3e-06
 Identities = 20/35 (57%), Positives = 28/35 (80%)
 Frame = +2

Query: 509 KIPELPLVVADKVQEINKTKQAVIFLRRLKAWSDI 613
           ++ E+PLVV+DKV+   KTK+AV+FLRR   W+DI
Sbjct: 145 QVAEVPLVVSDKVESFRKTKEAVVFLRRSHLWADI 179


>U80952-4|AAB38095.1|  662|Caenorhabditis elegans Hypothetical
           protein F54H5.5 protein.
          Length = 662

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 16/47 (34%), Positives = 27/47 (57%), Gaps = 3/47 (6%)
 Frame = -1

Query: 300 FGRQHVQYPMIQHWFVTSLLAHAV--GLPRVLGHRNVNIID-QVRTD 169
           F  + V+ P+   WFVTSL+  AV   +   + H  V ++D ++R+D
Sbjct: 386 FSPETVEDPVTNGWFVTSLIREAVEENIKEAICHILVQLLDSKIRSD 432


>U23523-9|AAC46564.1|  147|Caenorhabditis elegans Hypothetical
           protein F53A9.9 protein.
          Length = 147

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = -1

Query: 369 HHDTCYRRHPDRTYEYHHHGHAEFGRQH 286
           HHD  +++H  + ++ HHHGH   G  H
Sbjct: 120 HHDGHHKKHGRKEHD-HHHGH-HHGHHH 145


>Z46828-1|CAA86856.1|  542|Caenorhabditis elegans Hypothetical
           protein R03D7.2 protein.
          Length = 542

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 12/21 (57%), Positives = 15/21 (71%)
 Frame = -2

Query: 539 RLQPREARESFNNVSSSLNER 477
           R QP  +R S NN+SSSL+ R
Sbjct: 24  RRQPHHSRSSSNNISSSLHSR 44


>Z73970-2|CAA98243.2| 1560|Caenorhabditis elegans Hypothetical
           protein C29A12.4 protein.
          Length = 1560

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 12/36 (33%), Positives = 20/36 (55%)
 Frame = -2

Query: 506 NNVSSSLNERWDAGSSNGCRQGRSPLSEVDATVPTP 399
           N VS+ + + ++A +S G   G S  +E+D   P P
Sbjct: 625 NGVSTKIGQEFEASNSTGIELGCSLSNELDICEPNP 660


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,940,820
Number of Sequences: 27780
Number of extensions: 286659
Number of successful extensions: 981
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 888
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 971
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1476380920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)