Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060431.seq
         (673 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ223627-1|CAA11500.1|  371|Tribolium castaneum orthodenticle-1 ...    31   0.011
AY490815-1|AAR82970.1|  136|Tribolium castaneum glass protein pr...    24   0.99 
AY293621-1|AAP46162.1|  392|Tribolium castaneum glass protein pr...    24   0.99 
AY600513-1|AAT11861.1|  314|Tribolium castaneum spalt-like prote...    22   4.0  
EF592537-1|ABQ95983.1|  593|Tribolium castaneum beta-N-acetylglu...    22   5.3  
AY884065-1|AAX84206.1|  697|Tribolium castaneum laccase 1 protein.     22   5.3  
AJ307577-1|CAC84070.1|  301|Tribolium castaneum dachshund protein.     21   6.9  

>AJ223627-1|CAA11500.1|  371|Tribolium castaneum orthodenticle-1
           protein protein.
          Length = 371

 Score = 30.7 bits (66), Expect = 0.011
 Identities = 16/39 (41%), Positives = 21/39 (53%)
 Frame = +3

Query: 411 PSRQPPTAESGLGGSVAATGVPALVQARGHIIERFPSFP 527
           P    P+  SGLGG ++   +PAL    GH +E  P FP
Sbjct: 76  PYAPHPSLSSGLGGGLSGMPMPALGFGLGHPLESVP-FP 113


>AY490815-1|AAR82970.1|  136|Tribolium castaneum glass protein
           protein.
          Length = 136

 Score = 24.2 bits (50), Expect = 0.99
 Identities = 12/24 (50%), Positives = 14/24 (58%)
 Frame = +2

Query: 431 SGERPWRQRCCYRRPSARSG*RTH 502
           SGE+P+R   C RR S  S   TH
Sbjct: 45  SGEKPFRCPVCDRRFSQSSSVTTH 68



 Score = 22.2 bits (45), Expect = 4.0
 Identities = 9/18 (50%), Positives = 11/18 (61%)
 Frame = +2

Query: 410 TVASTSDSGERPWRQRCC 463
           T    + SGERP+R R C
Sbjct: 66  TTHMRTHSGERPYRCRLC 83


>AY293621-1|AAP46162.1|  392|Tribolium castaneum glass protein
           protein.
          Length = 392

 Score = 24.2 bits (50), Expect = 0.99
 Identities = 12/24 (50%), Positives = 14/24 (58%)
 Frame = +2

Query: 431 SGERPWRQRCCYRRPSARSG*RTH 502
           SGE+P+R   C RR S  S   TH
Sbjct: 301 SGEKPFRCPVCDRRFSQSSSVTTH 324



 Score = 22.2 bits (45), Expect = 4.0
 Identities = 9/18 (50%), Positives = 11/18 (61%)
 Frame = +2

Query: 410 TVASTSDSGERPWRQRCC 463
           T    + SGERP+R R C
Sbjct: 322 TTHMRTHSGERPYRCRLC 339


>AY600513-1|AAT11861.1|  314|Tribolium castaneum spalt-like protein
           protein.
          Length = 314

 Score = 22.2 bits (45), Expect = 4.0
 Identities = 8/24 (33%), Positives = 15/24 (62%)
 Frame = +2

Query: 431 SGERPWRQRCCYRRPSARSG*RTH 502
           +GERP++ + C R  + +   +TH
Sbjct: 158 TGERPFKCKICGRAFTTKGNLKTH 181


>EF592537-1|ABQ95983.1|  593|Tribolium castaneum
           beta-N-acetylglucosaminidase NAG2 protein.
          Length = 593

 Score = 21.8 bits (44), Expect = 5.3
 Identities = 11/40 (27%), Positives = 19/40 (47%), Gaps = 1/40 (2%)
 Frame = +2

Query: 176 PDL-VNDVHVSMSKNSRQPYCVSKEAGPKPVLNHGVLDVL 292
           PD  + ++ V + +   + YC+    G    +N  V DVL
Sbjct: 318 PDAGLGNLSVCIDQQPWRSYCIQPPCGQLNPINPNVFDVL 357


>AY884065-1|AAX84206.1|  697|Tribolium castaneum laccase 1 protein.
          Length = 697

 Score = 21.8 bits (44), Expect = 5.3
 Identities = 17/70 (24%), Positives = 25/70 (35%), Gaps = 10/70 (14%)
 Frame = -1

Query: 346 HPDRTYEYH---HHGHAEFGRQHVQYPMIQHWFGTSLL-------AHAVGLPRVLGHRNV 197
           HP  T+ YH   H+    F   H  +      FG  ++        HA      L    +
Sbjct: 158 HPGMTFRYHFNVHNSGTHFWHSHSGFQRSDGTFGPFIVRVPEEDNPHAKLYDYDLSSHVI 217

Query: 196 NIIDQVRTDG 167
            I+D  + DG
Sbjct: 218 TILDWTKEDG 227


>AJ307577-1|CAC84070.1|  301|Tribolium castaneum dachshund protein.
          Length = 301

 Score = 21.4 bits (43), Expect = 6.9
 Identities = 7/14 (50%), Positives = 11/14 (78%)
 Frame = -3

Query: 134 HPAPSHSSLNTPTL 93
           HPA +HS+L +P +
Sbjct: 121 HPAAAHSALLSPAM 134


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 149,293
Number of Sequences: 336
Number of extensions: 3224
Number of successful extensions: 10
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 17489640
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)