Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060431.seq
         (673 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1711.06 |rpl401|rpl4-1, rpl4|60S ribosomal protein L2|Schizo...   109   3e-25
SPBP8B7.03c |rpl402|rpl4-2, rpl4|60S ribosomal protein L2|Schizo...   109   3e-25
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    27   2.5  
SPBC577.12 |mug71||endoribonuclease |Schizosaccharomyces pombe|c...    26   4.3  
SPAC3H8.07c |||prefoldin subunit 3|Schizosaccharomyces pombe|chr...    26   5.7  
SPAC1D4.08 |pis1||CDP-diacylglycerol--inositol 3-phosphatidyltra...    26   5.7  
SPBC1709.08 |cft1||cleavage factor one Cft1 |Schizosaccharomyces...    25   7.5  
SPBC543.05c |||inorganic anion exchanger |Schizosaccharomyces po...    25   7.5  
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    25   7.5  

>SPBC1711.06 |rpl401|rpl4-1, rpl4|60S ribosomal protein
           L2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 363

 Score =  109 bits (263), Expect = 3e-25
 Identities = 46/52 (88%), Positives = 48/52 (92%)
 Frame = +1

Query: 256 QTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKPWRRWH 411
           QTSAESWGTGRA+ARIPRV GGGTHRSGQ AFGNMCR GRMFAPTK WR+WH
Sbjct: 61  QTSAESWGTGRALARIPRVGGGGTHRSGQAAFGNMCRSGRMFAPTKTWRKWH 112



 Score = 73.7 bits (173), Expect = 2e-14
 Identities = 34/60 (56%), Positives = 44/60 (73%)
 Frame = +2

Query: 74  LSVARPLVSVYSEKSETVQGAAKPLPFVFKAPIRPDLVNDVHVSMSKNSRQPYCVSKEAG 253
           ++ ARP VS+Y+ K  +V      LPFVFKAPIRPDLV  VH +++KN RQPY VS++AG
Sbjct: 1   MAAARPTVSIYN-KDGSVSSETLALPFVFKAPIRPDLVRSVHTAVAKNKRQPYAVSEKAG 59



 Score = 47.2 bits (107), Expect = 2e-06
 Identities = 24/69 (34%), Positives = 39/69 (56%)
 Frame = +3

Query: 444 LGGSVAATGVPALVQARGHIIERFPSFPWL*PTKSKRSTRPNRLSSS*GRLKAWSDILXV 623
           +  +VAA+GVP+L+ ARGH IE  P  P +     +   +     +    +KA+ D++ V
Sbjct: 124 IASAVAASGVPSLLLARGHRIEEIPEVPLVVDDAVQSFQKTKEAVALLKEIKAYRDVIKV 183

Query: 624 YKSQRLRAG 650
             S++LRAG
Sbjct: 184 ANSRKLRAG 192


>SPBP8B7.03c |rpl402|rpl4-2, rpl4|60S ribosomal protein
           L2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 363

 Score =  109 bits (263), Expect = 3e-25
 Identities = 46/52 (88%), Positives = 48/52 (92%)
 Frame = +1

Query: 256 QTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKPWRRWH 411
           QTSAESWGTGRA+ARIPRV GGGTHRSGQ AFGNMCR GRMFAPTK WR+WH
Sbjct: 61  QTSAESWGTGRALARIPRVGGGGTHRSGQAAFGNMCRSGRMFAPTKTWRKWH 112



 Score = 74.5 bits (175), Expect = 1e-14
 Identities = 35/60 (58%), Positives = 44/60 (73%)
 Frame = +2

Query: 74  LSVARPLVSVYSEKSETVQGAAKPLPFVFKAPIRPDLVNDVHVSMSKNSRQPYCVSKEAG 253
           ++ ARP VS+YS K  +V      LPFVFKAPIRPDLV  VH +++KN RQPY VS++AG
Sbjct: 1   MAAARPTVSIYS-KDGSVSSETIALPFVFKAPIRPDLVRSVHTAVAKNKRQPYAVSEKAG 59



 Score = 46.8 bits (106), Expect = 3e-06
 Identities = 24/69 (34%), Positives = 39/69 (56%)
 Frame = +3

Query: 444 LGGSVAATGVPALVQARGHIIERFPSFPWL*PTKSKRSTRPNRLSSS*GRLKAWSDILXV 623
           +  +VAA+GVP+L+ ARGH IE  P  P +     +   +     +    +KA+ D++ V
Sbjct: 124 ISSAVAASGVPSLLLARGHRIEEIPEVPLVVDDAVQSFQKTKEAVALLKEIKAYRDVVKV 183

Query: 624 YKSQRLRAG 650
             S++LRAG
Sbjct: 184 ANSRKLRAG 192


>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 27.1 bits (57), Expect = 2.5
 Identities = 12/42 (28%), Positives = 17/42 (40%)
 Frame = +3

Query: 375 YVRPHEALAALAPSRQPPTAESGLGGSVAATGVPALVQARGH 500
           +  PH  L + AP  QP   E     +V     P+    +GH
Sbjct: 854 FYEPHSYLESPAPEPQPSYEEESFNATVIHAPTPSTATFQGH 895


>SPBC577.12 |mug71||endoribonuclease |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 606

 Score = 26.2 bits (55), Expect = 4.3
 Identities = 10/26 (38%), Positives = 17/26 (65%)
 Frame = -2

Query: 135 APCTVSLFSEYTDTKGRATDRLISLL 58
           A C V ++SEYT   G ++  L++L+
Sbjct: 490 ADCVVKIWSEYTKNTGESSPVLVALV 515


>SPAC3H8.07c |||prefoldin subunit 3|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 169

 Score = 25.8 bits (54), Expect = 5.7
 Identities = 11/21 (52%), Positives = 15/21 (71%)
 Frame = +2

Query: 539 DKVQEINKTKQAVIFLRAPQG 601
           DK+ +I KT Q+V FL+  QG
Sbjct: 55  DKIPDIRKTLQSVQFLKERQG 75


>SPAC1D4.08 |pis1||CDP-diacylglycerol--inositol
           3-phosphatidyltransferase Pis1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 251

 Score = 25.8 bits (54), Expect = 5.7
 Identities = 14/28 (50%), Positives = 20/28 (71%), Gaps = 2/28 (7%)
 Frame = -3

Query: 92  KVG-LPIDSFRYFSEAIPLKY-TLIAVI 15
           K+G LP+ SF Y +  +PL Y TL+AV+
Sbjct: 186 KLGYLPVPSFIYSTGELPLSYPTLLAVL 213


>SPBC1709.08 |cft1||cleavage factor one Cft1 |Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1441

 Score = 25.4 bits (53), Expect = 7.5
 Identities = 9/29 (31%), Positives = 18/29 (62%)
 Frame = +2

Query: 212  KNSRQPYCVSKEAGPKPVLNHGVLDVLSP 298
            ++  +PY ++ +    P+ N G LD++SP
Sbjct: 1054 EDGNEPYAITDDNDYLPMANTGSLDLVSP 1082


>SPBC543.05c |||inorganic anion exchanger |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 517

 Score = 25.4 bits (53), Expect = 7.5
 Identities = 10/25 (40%), Positives = 14/25 (56%)
 Frame = +2

Query: 218 SRQPYCVSKEAGPKPVLNHGVLDVL 292
           S QP C+    GP  V N+ V D++
Sbjct: 89  SSQPLCIVGVTGPITVFNYTVYDIM 113


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 25.4 bits (53), Expect = 7.5
 Identities = 15/44 (34%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
 Frame = -1

Query: 562 LVDLLDFVGYNQGKLG-NLSIMCPLA*TSAGTPVAATLPPRPLS 434
           L+D L  +G +Q ++  N   +      SAGTP + + PP P S
Sbjct: 192 LIDSLMKMGISQDQIAENADFVKAYLNESAGTPTSTSAPPIPPS 235


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,607,314
Number of Sequences: 5004
Number of extensions: 50270
Number of successful extensions: 153
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 141
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 149
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 307866294
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)