Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV060431.seq
(673 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_06_0298 - 32925441-32925998,32926371-32926730,32927161-329272... 113 9e-26
07_01_0578 + 4295386-4296489,4297394-4297507 113 1e-25
10_02_0199 + 6668902-6669293,6669825-6669882 35 0.051
05_03_0163 + 9070781-9071320 31 0.63
03_01_0123 + 965657-966214,967827-967995,968632-969236,969333-96... 31 0.84
07_03_1678 + 28606656-28606784,28607161-28607352,28607431-28607988 30 1.5
07_01_0524 + 3892340-3894625,3894995-3895109,3895204-3895298,389... 30 1.5
06_03_0243 + 18629793-18630047,18630362-18630442,18631911-186323... 30 1.9
03_01_0520 - 3900387-3900613,3900812-3900853,3902092-3902210,390... 30 1.9
01_03_0008 + 11594061-11594078,11594201-11594285,11594506-11595149 30 1.9
12_01_0073 + 613316-613447,613611-613802,614067-614232,614460-61... 29 2.6
02_01_0177 + 1214226-1214294,1214707-1214794,1216095-1216308,121... 28 5.9
10_07_0130 + 13241085-13241151,13241268-13241339,13242458-132428... 28 7.8
10_01_0359 + 3956527-3956616,3957623-3957818,3958102-3959418,395... 28 7.8
>03_06_0298 -
32925441-32925998,32926371-32926730,32927161-32927230,
32927642-32927797,32929181-32929242,32929339-32929352,
32930421-32930520,32931474-32932574
Length = 806
Score = 113 bits (273), Expect = 9e-26
Identities = 48/52 (92%), Positives = 50/52 (96%)
Frame = +1
Query: 256 QTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKPWRRWH 411
QTSAESWGTGRAV+RIPRV GGGTHR+GQGAFGNMCRGGRMFAPTK WRRWH
Sbjct: 64 QTSAESWGTGRAVSRIPRVPGGGTHRAGQGAFGNMCRGGRMFAPTKIWRRWH 115
Score = 54.4 bits (125), Expect = 8e-08
Identities = 29/60 (48%), Positives = 36/60 (60%), Gaps = 1/60 (1%)
Frame = +2
Query: 77 SVARPLVSVYS-EKSETVQGAAKPLPFVFKAPIRPDLVNDVHVSMSKNSRQPYCVSKEAG 253
+ ARPLVSV + E A +P V +APIRPD+V H +S N RQPY VS+ AG
Sbjct: 3 AAARPLVSVKALEGDMATDSAGIQMPQVLRAPIRPDVVTFTHKLLSCNRRQPYAVSRRAG 62
Score = 36.3 bits (80), Expect = 0.022
Identities = 16/28 (57%), Positives = 20/28 (71%)
Frame = +3
Query: 444 LGGSVAATGVPALVQARGHIIERFPSFP 527
+ ++AAT VP+LV ARGH IE P FP
Sbjct: 127 VASALAATAVPSLVLARGHRIEGVPEFP 154
Score = 32.3 bits (70), Expect = 0.36
Identities = 12/26 (46%), Positives = 19/26 (73%)
Frame = +2
Query: 512 IPELPLVVADKVQEINKTKQAVIFLR 589
+PE PLVV+D ++ I KT Q++ L+
Sbjct: 150 VPEFPLVVSDSIESIEKTAQSIKVLK 175
>07_01_0578 + 4295386-4296489,4297394-4297507
Length = 405
Score = 113 bits (272), Expect = 1e-25
Identities = 47/52 (90%), Positives = 50/52 (96%)
Frame = +1
Query: 256 QTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKPWRRWH 411
QTSAESWGTGRAV+RIPRV GGGTHR+GQGAFGNMCRGGRMFAPTK WR+WH
Sbjct: 65 QTSAESWGTGRAVSRIPRVPGGGTHRAGQGAFGNMCRGGRMFAPTKTWRKWH 116
Score = 52.4 bits (120), Expect = 3e-07
Identities = 28/58 (48%), Positives = 38/58 (65%), Gaps = 2/58 (3%)
Frame = +2
Query: 86 RPLVSVYSEKSE--TVQGAAKPLPFVFKAPIRPDLVNDVHVSMSKNSRQPYCVSKEAG 253
RPLVSV + + + T ++ L VF+AP+RPD+V VH +S N RQPY VS+ AG
Sbjct: 6 RPLVSVKALEGDMATDNSSSLALAEVFRAPLRPDVVRFVHRLLSCNKRQPYAVSRRAG 63
Score = 34.3 bits (75), Expect = 0.090
Identities = 15/28 (53%), Positives = 19/28 (67%)
Frame = +3
Query: 444 LGGSVAATGVPALVQARGHIIERFPSFP 527
+ ++AAT VP+LV ARGH IE P P
Sbjct: 128 VASALAATSVPSLVLARGHRIETVPELP 155
Score = 34.3 bits (75), Expect = 0.090
Identities = 13/26 (50%), Positives = 19/26 (73%)
Frame = +2
Query: 512 IPELPLVVADKVQEINKTKQAVIFLR 589
+PELPLV++D + I KT QA+ L+
Sbjct: 151 VPELPLVISDSAESIEKTSQAIKILK 176
>10_02_0199 + 6668902-6669293,6669825-6669882
Length = 149
Score = 35.1 bits (77), Expect = 0.051
Identities = 21/47 (44%), Positives = 23/47 (48%)
Frame = +1
Query: 235 REQGGWSQTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGR 375
RE GG A+SW TGRA A + R R GG R A N G R
Sbjct: 30 REGGG----GAQSWATGRAAAELGRGRKGGRRRGLAQAAANSGEGNR 72
>05_03_0163 + 9070781-9071320
Length = 179
Score = 31.5 bits (68), Expect = 0.63
Identities = 17/37 (45%), Positives = 20/37 (54%)
Frame = +1
Query: 235 REQGGWSQTSAESWGTGRAVARIPRVRGGGTHRSGQG 345
R GGWSQ AE WG G ++ GGG RS +G
Sbjct: 15 RGAGGWSQR-AEGWGGGGGRSQRAEGGGGGGGRSRRG 50
>03_01_0123 +
965657-966214,967827-967995,968632-969236,969333-969434
Length = 477
Score = 31.1 bits (67), Expect = 0.84
Identities = 12/25 (48%), Positives = 16/25 (64%)
Frame = +1
Query: 220 EAALLREQGGWSQTSAESWGTGRAV 294
EAALLR G W++ + + WG G V
Sbjct: 367 EAALLRAAGDWARGAGQRWGVGDVV 391
>07_03_1678 + 28606656-28606784,28607161-28607352,28607431-28607988
Length = 292
Score = 30.3 bits (65), Expect = 1.5
Identities = 19/52 (36%), Positives = 22/52 (42%)
Frame = +1
Query: 49 ASLK*RNESIGSPTFSVGVFREE*DGAGCSQAPPVRVQGAHPSGPGQ*CSRF 204
ASL N + P+F V G SQA V + GAH G Q C F
Sbjct: 125 ASLALANSDLPPPSFDVANLTASFAAKGLSQADMVALSGAHTVGQAQ-CQNF 175
>07_01_0524 +
3892340-3894625,3894995-3895109,3895204-3895298,
3895929-3896167,3896524-3896610,3896967-3897066,
3897908-3898115,3898224-3899422
Length = 1442
Score = 30.3 bits (65), Expect = 1.5
Identities = 21/70 (30%), Positives = 36/70 (51%), Gaps = 6/70 (8%)
Frame = +1
Query: 211 QELEAALLREQGGWSQTSAESWGTGRAVAR--IPRVRGGGTHRSGQGAFGNMCR---GGR 375
+++ A ++GG S S S G++V + + R+R H G G+ G++ + GG+
Sbjct: 64 EKVSGAKSTDEGGGSDKSKGS-EVGKSVLQPDVKRIRTEAAHGGGSGSGGSVSKDGTGGK 122
Query: 376 MFAPTKP-WR 402
M P P WR
Sbjct: 123 MLRPGFPKWR 132
>06_03_0243 +
18629793-18630047,18630362-18630442,18631911-18632305,
18632471-18632926,18633156-18633247,18633528-18633683,
18635657-18636057
Length = 611
Score = 29.9 bits (64), Expect = 1.9
Identities = 25/94 (26%), Positives = 41/94 (43%), Gaps = 1/94 (1%)
Frame = +1
Query: 127 AGCSQAPPVRVQGAHPSGPGQ*CSRFYVQELEAALLREQGGWSQTSAESWGTGRAVARIP 306
+G ++A + + P GP ++ +++L A RE + +A + T +A +
Sbjct: 448 SGYTRAATLNLPSVIPIGPRN--TQENIKQLLAGGQRELVATGEAAATAAATAKATPPLA 505
Query: 307 R-VRGGGTHRSGQGAFGNMCRGGRMFAPTKPWRR 405
R GG HR G+G G GG WRR
Sbjct: 506 RRTADGGAHR-GRGGGGAEADGGARRGRGGGWRR 538
>03_01_0520 -
3900387-3900613,3900812-3900853,3902092-3902210,
3903633-3903712,3903829-3903856,3904151-3904272,
3904714-3904857,3904897-3906327
Length = 730
Score = 29.9 bits (64), Expect = 1.9
Identities = 12/36 (33%), Positives = 17/36 (47%)
Frame = -1
Query: 370 HHDTCYRRHPDRTYEYHHHGHAEFGRQHVQYPMIQH 263
HH + H + YE+ + H + RQ QY QH
Sbjct: 150 HHQQYQQHHHQQQYEHQNRIHFQHHRQQQQYQQHQH 185
>01_03_0008 + 11594061-11594078,11594201-11594285,11594506-11595149
Length = 248
Score = 29.9 bits (64), Expect = 1.9
Identities = 16/44 (36%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
Frame = -1
Query: 334 TYEYHH-HGHAEFGRQHVQYPMIQHWFGTSLLAHAVGLPRVLGH 206
T+++HH HGH FGR H +P H G ++ + G P H
Sbjct: 144 THDHHHGHGHHLFGRDH--WPASHHPAG-GMVNYGGGAPYYAAH 184
>12_01_0073 +
613316-613447,613611-613802,614067-614232,614460-614845
Length = 291
Score = 29.5 bits (63), Expect = 2.6
Identities = 17/52 (32%), Positives = 23/52 (44%)
Frame = +1
Query: 49 ASLK*RNESIGSPTFSVGVFREE*DGAGCSQAPPVRVQGAHPSGPGQ*CSRF 204
ASL N I +PTF +G + G S + + GAH G + C F
Sbjct: 126 ASLDTANNDIPAPTFDLGDLTKSFSNKGLSATDMIALSGAHTIGQAR-CVNF 176
>02_01_0177 + 1214226-1214294,1214707-1214794,1216095-1216308,
1216413-1216738,1216860-1217013,1217377-1217438,
1218078-1218133,1219456-1221279,1221775-1222698,
1222855-1222866
Length = 1242
Score = 28.3 bits (60), Expect = 5.9
Identities = 17/47 (36%), Positives = 19/47 (40%)
Frame = +1
Query: 235 REQGGWSQTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGR 375
R+ GG S S G+GR R RG R G G GGR
Sbjct: 1176 RQGGGRSGYSGRGGGSGRGGGGYQRDRGSQGSRGGYGGGSRFQDGGR 1222
>10_07_0130 + 13241085-13241151,13241268-13241339,13242458-13242862,
13243057-13243112,13244116-13244274,13244379-13244498,
13244591-13245361,13245902-13246078,13246192-13246669,
13247502-13248094
Length = 965
Score = 27.9 bits (59), Expect = 7.8
Identities = 18/42 (42%), Positives = 20/42 (47%), Gaps = 2/42 (4%)
Frame = +1
Query: 220 EAALLREQGG-WSQTSAE-SWGTGRAVARIPRVRGGGTHRSG 339
EAAL E GG W+ + E G RA A PR G SG
Sbjct: 916 EAALSPESGGRWAGPAVELGGGDARAAAAEPRGHGNNLRHSG 957
>10_01_0359 +
3956527-3956616,3957623-3957818,3958102-3959418,
3959482-3960445,3960588-3960648,3961500-3961946
Length = 1024
Score = 27.9 bits (59), Expect = 7.8
Identities = 12/25 (48%), Positives = 14/25 (56%)
Frame = -1
Query: 391 SWGRTYVHHDTCYRRHPDRTYEYHH 317
SWGR H D RR P R+ +HH
Sbjct: 303 SWGRD--HADNRLRRSPSRSSNFHH 325
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,246,215
Number of Sequences: 37544
Number of extensions: 443555
Number of successful extensions: 1723
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1612
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1715
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1703141568
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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