Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060431.seq
         (673 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF000196-2|AAC24253.1|  345|Caenorhabditis elegans Ribosomal pro...   108   4e-24
U23523-9|AAC46564.1|  147|Caenorhabditis elegans Hypothetical pr...    29   4.0  
Z46828-1|CAA86856.1|  542|Caenorhabditis elegans Hypothetical pr...    28   5.3  
Z78061-1|CAB01494.1|  658|Caenorhabditis elegans Hypothetical pr...    27   9.2  

>AF000196-2|AAC24253.1|  345|Caenorhabditis elegans Ribosomal
           protein, large subunitprotein 4 protein.
          Length = 345

 Score =  108 bits (259), Expect = 4e-24
 Identities = 47/52 (90%), Positives = 48/52 (92%)
 Frame = +1

Query: 256 QTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKPWRRWH 411
           Q SAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGG MFAP K +RRWH
Sbjct: 60  QHSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGHMFAPLKVFRRWH 111



 Score = 56.4 bits (130), Expect = 2e-08
 Identities = 28/57 (49%), Positives = 38/57 (66%)
 Frame = +2

Query: 83  ARPLVSVYSEKSETVQGAAKPLPFVFKAPIRPDLVNDVHVSMSKNSRQPYCVSKEAG 253
           ARPLV+VY EK E  Q   + LP VF+ PIRPDLV+ +   + +N RQ + V+ +AG
Sbjct: 3   ARPLVTVYDEKYEATQSQIR-LPAVFRTPIRPDLVSFIADQVRRNRRQAHAVNTKAG 58



 Score = 50.0 bits (114), Expect = 2e-06
 Identities = 25/69 (36%), Positives = 39/69 (56%)
 Frame = +3

Query: 444 LGGSVAATGVPALVQARGHIIERFPSFPWL*PTKSKRSTRPNRLSSS*GRLKAWSDILXV 623
           +  ++AA+G+PAL+QARGH+I++    P +   K +   +         R   W+DI  V
Sbjct: 123 VSSAIAASGIPALLQARGHVIDQVAEVPLVVSDKVESFRKTKEAVVFLRRSHLWADIEKV 182

Query: 624 YKSQRLRAG 650
           Y S+R RAG
Sbjct: 183 YNSKRNRAG 191



 Score = 39.9 bits (89), Expect = 0.002
 Identities = 16/27 (59%), Positives = 23/27 (85%)
 Frame = +2

Query: 509 KIPELPLVVADKVQEINKTKQAVIFLR 589
           ++ E+PLVV+DKV+   KTK+AV+FLR
Sbjct: 145 QVAEVPLVVSDKVESFRKTKEAVVFLR 171


>U23523-9|AAC46564.1|  147|Caenorhabditis elegans Hypothetical
           protein F53A9.9 protein.
          Length = 147

 Score = 28.7 bits (61), Expect = 4.0
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = -1

Query: 370 HHDTCYRRHPDRTYEYHHHGHAEFGRQH 287
           HHD  +++H  + ++ HHHGH   G  H
Sbjct: 120 HHDGHHKKHGRKEHD-HHHGH-HHGHHH 145


>Z46828-1|CAA86856.1|  542|Caenorhabditis elegans Hypothetical
           protein R03D7.2 protein.
          Length = 542

 Score = 28.3 bits (60), Expect = 5.3
 Identities = 12/21 (57%), Positives = 15/21 (71%)
 Frame = -3

Query: 539 RLQPREARESFNNVSSSLNER 477
           R QP  +R S NN+SSSL+ R
Sbjct: 24  RRQPHHSRSSSNNISSSLHSR 44


>Z78061-1|CAB01494.1|  658|Caenorhabditis elegans Hypothetical
           protein C48G7.1 protein.
          Length = 658

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 14/43 (32%), Positives = 18/43 (41%)
 Frame = +2

Query: 167 PIRPDLVNDVHVSMSKNSRQPYCVSKEAGPKPVLNHGVLDVLS 295
           P + D ++DVH+S S    Q     K     P L H     LS
Sbjct: 205 PSKHDRLDDVHISRSDRRSQSVRSHKSVTASPKLGHSTSSTLS 247


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,755,362
Number of Sequences: 27780
Number of extensions: 307119
Number of successful extensions: 991
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 901
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 987
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1518563232
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)