Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060430.seq
         (704 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ005083-1|CAB65469.1|  585|Tribolium castaneum signal receptor ...    33   0.003
AY884063-1|AAX84204.1|  682|Tribolium castaneum pro-phenol oxida...    22   5.6  

>AJ005083-1|CAB65469.1|  585|Tribolium castaneum signal receptor
           protein protein.
          Length = 585

 Score = 32.7 bits (71), Expect = 0.003
 Identities = 25/78 (32%), Positives = 30/78 (38%), Gaps = 1/78 (1%)
 Frame = -1

Query: 557 NDCVSGKRPLELFESEQSDCGNGC-GYDCASNYDGGNET*TCACDRNDSCMAMRGDHIAP 381
           N C +G    +L  S    C +G  GY C  N D        AC  N +C+   G     
Sbjct: 229 NPCQNGGTCHDLVNSFSCSCPSGTLGYICEINVDDCRPG---ACHNNGTCLDKVGGF--- 282

Query: 380 SEREVPCRPTFVRPSCPG 327
              E  C P FV P C G
Sbjct: 283 ---ECKCPPGFVGPRCEG 297


>AY884063-1|AAX84204.1|  682|Tribolium castaneum pro-phenol oxidase
           subunit 1 protein.
          Length = 682

 Score = 21.8 bits (44), Expect = 5.6
 Identities = 8/15 (53%), Positives = 10/15 (66%)
 Frame = +3

Query: 378 RWRDMVAPHRHTGVV 422
           RWRD +    H+GVV
Sbjct: 310 RWRDRIYDAIHSGVV 324


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 144,143
Number of Sequences: 336
Number of extensions: 2805
Number of successful extensions: 4
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 18634795
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)