Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV060430.seq
(704 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC57A7.04c |pabp||mRNA export shuttling protein |Schizosacchar... 40 3e-04
SPBC23E6.01c ||SPBPJ758.01|RNA-binding protein, rrm type|Schizos... 38 0.001
SPBC660.11 |tcg1|mug187|single-stranded telomeric binding protei... 38 0.001
SPBC4F6.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr ... 37 0.003
SPBC11C11.08 |srp1||SR family protein Srp1|Schizosaccharomyces p... 37 0.003
SPBC13A2.01c |||nuclear cap-binding complex small subunit|Schizo... 36 0.004
SPAC25G10.01 ||SPAC2C4.18|RNA-binding protein|Schizosaccharomyce... 36 0.007
SPAC17A2.09c |csx1||RNA-binding protein Csx1|Schizosaccharomyces... 35 0.010
SPBP22H7.02c |||RNA-binding protein Mrd1 |Schizosaccharomyces po... 34 0.017
SPBC16A3.18 |cip1||RNA-binding protein Cip1|Schizosaccharomyces ... 34 0.023
SPAC19A8.13 |usp101|snp1|U1 snRNP-associated protein Usp101 |Sch... 34 0.023
SPBC18H10.03 |tif35||translation initiation factor eIF3g|Schizos... 33 0.040
SPAC16E8.06c |nop12||RNA-binding protein Nop12|Schizosaccharomyc... 33 0.053
SPBC887.05c |cwf29||RNA-binding protein Cwf29|Schizosaccharomyce... 33 0.053
SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr 1|||M... 32 0.070
SPBC146.07 |prp2|mis11|U2AF large subunit |Schizosaccharomyces p... 32 0.092
SPAC31G5.01 |sap49|SPAPB1A11.05|RNA-binding protein Sap49|Schizo... 31 0.16
SPBC1289.02c |uap2||U2 snRNP-associated protein Uap2|Schizosacch... 31 0.21
SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyce... 31 0.21
SPBC16E9.12c |pab2||poly|Schizosaccharomyces pombe|chr 2|||Manual 30 0.37
SPAC823.07 |||GPI-phospholipase A2 activity regulator |Schizosac... 29 0.65
SPBC660.15 |||mRNA cleavage factor complex subunit |Schizosaccha... 28 1.1
SPBC1D7.04 |mlo3||RNA annealing factor Mlo3|Schizosaccharomyces ... 28 1.1
SPBC17G9.05 |rct1|cyp6|RRM-containing cyclophilin regulating tra... 28 1.5
SPBC365.04c |||RNA-binding protein|Schizosaccharomyces pombe|chr... 28 1.5
SPBC21B10.07 |||glycosyl hydrolase family 16|Schizosaccharomyces... 28 1.5
SPAC27D7.03c |mei2||RNA-binding protein involved in meiosis Mei2... 27 2.0
SPAC16C9.04c |||CCR4-Not complex subunit Mot2 |Schizosaccharomyc... 27 2.6
SPAC1610.03c |crp79|meu5|poly|Schizosaccharomyces pombe|chr 1|||... 27 3.5
SPCC1827.05c |||nucleolar RNA-binding protein NIFK |Schizosaccha... 27 3.5
SPBC8D2.09c |||U2 snRNP-associated protein Msl1 |Schizosaccharom... 25 8.0
>SPAC57A7.04c |pabp||mRNA export shuttling protein
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 653
Score = 39.9 bits (89), Expect = 3e-04
Identities = 17/41 (41%), Positives = 25/41 (60%)
Frame = +2
Query: 254 RDRYTRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRV 376
RD TR S G+A+V F D E+ALD ++ ++ GR R+
Sbjct: 113 RDAVTRRSLGYAYVNFHNMEDGEKALDELNYTLIKGRPCRI 153
Score = 31.5 bits (68), Expect = 0.12
Identities = 15/38 (39%), Positives = 24/38 (63%)
Frame = +2
Query: 272 ESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMA 385
+S+GF FV + +A +A+ M+ RML G+ L V +A
Sbjct: 402 KSKGFGFVCYTTPEEANKAVTEMNQRMLAGKPLYVALA 439
>SPBC23E6.01c ||SPBPJ758.01|RNA-binding protein, rrm
type|Schizosaccharomyces pombe|chr 2|||Manual
Length = 473
Score = 38.3 bits (85), Expect = 0.001
Identities = 18/43 (41%), Positives = 25/43 (58%)
Frame = +2
Query: 257 DRYTRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMA 385
D T SRG+ FVRF + D + AL M G++ R +RV +A
Sbjct: 221 DPQTNVSRGYGFVRFTDENDQKSALAEMQGQICGDRPIRVGLA 263
>SPBC660.11 |tcg1|mug187|single-stranded telomeric binding protein
Tgc1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 348
Score = 38.3 bits (85), Expect = 0.001
Identities = 16/35 (45%), Positives = 25/35 (71%)
Frame = +2
Query: 281 GFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMA 385
G AFV F + D ++A++T++G+ LD RE+ VQ A
Sbjct: 90 GIAFVTFNNQEDVDKAIETLNGKTLDDREIVVQKA 124
Score = 30.3 bits (65), Expect = 0.28
Identities = 14/39 (35%), Positives = 20/39 (51%)
Frame = +2
Query: 269 RESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMA 385
R RGF FV F D A++ M+G+ + L V+ A
Sbjct: 255 RRGRGFGFVSFANAEDQSRAIEEMNGKQVGDLTLVVKSA 293
>SPBC4F6.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 674
Score = 36.7 bits (81), Expect = 0.003
Identities = 16/35 (45%), Positives = 25/35 (71%)
Frame = +2
Query: 281 GFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMA 385
GFAFV +R+ AEEA+++++G +DGR + V A
Sbjct: 149 GFAFVWMKDRKAAEEAMNSLNGTEIDGRPIAVDWA 183
Score = 33.1 bits (72), Expect = 0.040
Identities = 16/40 (40%), Positives = 22/40 (55%)
Frame = +2
Query: 266 TRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMA 385
T E+RG+ FV F DA+ A + + L GR LR+ A
Sbjct: 42 TGENRGYGFVTFSMLEDAQRAAKELKNKKLHGRILRLDFA 81
>SPBC11C11.08 |srp1||SR family protein Srp1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 275
Score = 36.7 bits (81), Expect = 0.003
Identities = 21/42 (50%), Positives = 27/42 (64%), Gaps = 2/42 (4%)
Frame = +2
Query: 266 TRESRGFAFVRFFERRDAEEALDTMDGRMLD--GRELRVQMA 385
TR SR FAFV + + RDAE+A + GR L+ G LRV+ A
Sbjct: 43 TRTSRPFAFVEYEDSRDAEDAYYEVHGRRLERGGGVLRVEWA 84
>SPBC13A2.01c |||nuclear cap-binding complex small
subunit|Schizosaccharomyces pombe|chr 2|||Manual
Length = 182
Score = 36.3 bits (80), Expect = 0.004
Identities = 16/42 (38%), Positives = 25/42 (59%)
Frame = +2
Query: 257 DRYTRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQM 382
DR+T+ GF FV +FE +DA ++L + LD R +R +
Sbjct: 66 DRFTKTPCGFCFVEYFENQDALDSLKYISRTSLDERIIRADL 107
>SPAC25G10.01 ||SPAC2C4.18|RNA-binding protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 297
Score = 35.5 bits (78), Expect = 0.007
Identities = 17/44 (38%), Positives = 25/44 (56%)
Frame = +2
Query: 254 RDRYTRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMA 385
R+ T+ SRGF F+ F +A A+D ++ + GR L VQ A
Sbjct: 134 REPVTKASRGFGFLSFSTVEEATSAIDNLNSQEFYGRVLNVQKA 177
>SPAC17A2.09c |csx1||RNA-binding protein Csx1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 632
Score = 35.1 bits (77), Expect = 0.010
Identities = 17/43 (39%), Positives = 24/43 (55%)
Frame = +2
Query: 257 DRYTRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMA 385
D T SR + FVRF ++ + AL M G + GR LR+ +A
Sbjct: 217 DPVTGLSRKYGFVRFSSEKEQQHALMHMQGYLCQGRPLRISVA 259
>SPBP22H7.02c |||RNA-binding protein Mrd1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 833
Score = 34.3 bits (75), Expect = 0.017
Identities = 14/37 (37%), Positives = 24/37 (64%)
Frame = +2
Query: 275 SRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMA 385
S GF FV F ++ A A+ M+G +LDG +L ++++
Sbjct: 664 SMGFGFVEFKDKASAVAAMHAMNGFVLDGHKLEIKLS 700
Score = 33.5 bits (73), Expect = 0.030
Identities = 16/42 (38%), Positives = 23/42 (54%)
Frame = +2
Query: 260 RYTRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMA 385
++ R +RGFAF F R+A A+ + L GR L +Q A
Sbjct: 755 KFDRSARGFAFAEFVTAREAANAMRALKNTHLLGRHLVLQYA 796
Score = 25.4 bits (53), Expect = 8.0
Identities = 9/27 (33%), Positives = 17/27 (62%)
Frame = +3
Query: 174 NLTYRTTPEDLRRVFERCGEVGDIYIP 254
NLTY +DL+ +F G++ +++P
Sbjct: 329 NLTYSCAEDDLKSLFGPFGQLEQVHMP 355
>SPBC16A3.18 |cip1||RNA-binding protein Cip1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 490
Score = 33.9 bits (74), Expect = 0.023
Identities = 13/34 (38%), Positives = 22/34 (64%)
Frame = +2
Query: 278 RGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQ 379
RG AF F+ +A+ + T++G ++GR LRV+
Sbjct: 243 RGLAFANFYRPEEAQVVVQTLNGYEINGRRLRVE 276
>SPAC19A8.13 |usp101|snp1|U1 snRNP-associated protein Usp101
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 261
Score = 33.9 bits (74), Expect = 0.023
Identities = 17/43 (39%), Positives = 25/43 (58%)
Frame = +2
Query: 254 RDRYTRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQM 382
R++ T +S G+AFV F RD + A G ML+GR + V +
Sbjct: 133 RNKVTGKSMGYAFVVFERERDLKVAYKASAGLMLNGRRIVVDV 175
>SPBC18H10.03 |tif35||translation initiation factor
eIF3g|Schizosaccharomyces pombe|chr 2|||Manual
Length = 282
Score = 33.1 bits (72), Expect = 0.040
Identities = 18/45 (40%), Positives = 30/45 (66%)
Frame = +2
Query: 212 RFRKVRRSW*YLHSRDRYTRESRGFAFVRFFERRDAEEALDTMDG 346
RF ++R YL ++D+ T ++GFAFV +++R A +A D +DG
Sbjct: 224 RFGGIQRV--YL-AKDKETGRAKGFAFVSYYDRDCAIKARDRLDG 265
>SPAC16E8.06c |nop12||RNA-binding protein Nop12|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 438
Score = 32.7 bits (71), Expect = 0.053
Identities = 15/44 (34%), Positives = 26/44 (59%)
Frame = +2
Query: 254 RDRYTRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMA 385
RD T +GFA+++F + ++AL + +M +GR LR+ A
Sbjct: 303 RDPKTNLGKGFAYIQFKDTMGVDKALLLNEKKMPEGRTLRIMRA 346
>SPBC887.05c |cwf29||RNA-binding protein Cwf29|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 217
Score = 32.7 bits (71), Expect = 0.053
Identities = 16/41 (39%), Positives = 26/41 (63%)
Frame = +2
Query: 254 RDRYTRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRV 376
RD+ T +S+GFAF+++ ++R A+D M L R +RV
Sbjct: 64 RDKETGKSKGFAFLKYEDQRSTVLAVDNMTNVKLLDRLVRV 104
>SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr
1|||Manual
Length = 500
Score = 32.3 bits (70), Expect = 0.070
Identities = 16/53 (30%), Positives = 26/53 (49%)
Frame = +3
Query: 168 VDNLTYRTTPEDLRRVFERCGEVGDIYIPEIGTQGKVEDSPS*GFSSVVMLKK 326
V NL++ T +DL F CG++ I +P G+++ FS + KK
Sbjct: 370 VGNLSFNATEDDLSTAFGGCGDIQSIRLPTDPQSGRLKGFGYVTFSDIDSAKK 422
>SPBC146.07 |prp2|mis11|U2AF large subunit |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 517
Score = 31.9 bits (69), Expect = 0.092
Identities = 15/37 (40%), Positives = 20/37 (54%)
Frame = +2
Query: 275 SRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMA 385
S+GF F F DAE A+ +DG+ G +L Q A
Sbjct: 350 SKGFCFCEFKNPSDAEVAISGLDGKDTYGNKLHAQFA 386
>SPAC31G5.01 |sap49|SPAPB1A11.05|RNA-binding protein
Sap49|Schizosaccharomyces pombe|chr 1|||Manual
Length = 335
Score = 31.1 bits (67), Expect = 0.16
Identities = 15/44 (34%), Positives = 20/44 (45%)
Frame = +2
Query: 254 RDRYTRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMA 385
RDR GF F F +D E A ++ L G+ +RV A
Sbjct: 44 RDRVRNSHNGFGFCEFLHEQDVEYACQILNQVKLFGKPIRVNRA 87
>SPBC1289.02c |uap2||U2 snRNP-associated protein
Uap2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 367
Score = 30.7 bits (66), Expect = 0.21
Identities = 14/34 (41%), Positives = 17/34 (50%)
Frame = +2
Query: 263 YTRESRGFAFVRFFERRDAEEALDTMDGRMLDGR 364
Y +E G VRF +AE + M GR DGR
Sbjct: 292 YDKEPDGVVTVRFSNNEEAEACVRLMQGRYFDGR 325
>SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 604
Score = 30.7 bits (66), Expect = 0.21
Identities = 14/45 (31%), Positives = 25/45 (55%)
Frame = +2
Query: 242 YLHSRDRYTRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRV 376
++H + S+GF ++++ A AL+ M+G L GR +RV
Sbjct: 368 FVHLQRDDQNRSKGFGYIQYRNPISARNALEKMNGFDLAGRNMRV 412
Score = 25.8 bits (54), Expect = 6.0
Identities = 14/43 (32%), Positives = 24/43 (55%)
Frame = +2
Query: 254 RDRYTRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQM 382
RD+ + S+G A+V F D+ +A + G+ L G + VQ+
Sbjct: 273 RDKISGRSKGVAYVEFC-HEDSVQAAIALSGKRLLGLPVIVQL 314
Score = 25.4 bits (53), Expect = 8.0
Identities = 9/30 (30%), Positives = 19/30 (63%)
Frame = +3
Query: 162 LKVDNLTYRTTPEDLRRVFERCGEVGDIYI 251
L V N+ + T ED++ +FE G++ +++
Sbjct: 342 LCVSNIHFNLTDEDVKAIFEPFGDIEFVHL 371
>SPBC16E9.12c |pab2||poly|Schizosaccharomyces pombe|chr 2|||Manual
Length = 166
Score = 29.9 bits (64), Expect = 0.37
Identities = 13/31 (41%), Positives = 18/31 (58%)
Frame = +3
Query: 159 SLKVDNLTYRTTPEDLRRVFERCGEVGDIYI 251
S+ V N+ Y TPE+L+ F CG V + I
Sbjct: 56 SVYVGNVDYSVTPEELQSHFASCGSVNRVTI 86
>SPAC823.07 |||GPI-phospholipase A2 activity regulator
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 331
Score = 29.1 bits (62), Expect = 0.65
Identities = 15/35 (42%), Positives = 21/35 (60%), Gaps = 3/35 (8%)
Frame = -1
Query: 557 NDCVSGKRPLELFESEQSDCGNGCGYDC---ASNY 462
N + K PL+L + + DCG+ CGY+C A NY
Sbjct: 48 NPSDTSKLPLDL-KLFRWDCGSNCGYECEITAENY 81
>SPBC660.15 |||mRNA cleavage factor complex subunit
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 474
Score = 28.3 bits (60), Expect = 1.1
Identities = 17/48 (35%), Positives = 24/48 (50%)
Frame = +3
Query: 132 PPPRIDGMVSLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPEIGTQGK 275
P R DG + + L + TT + LR FE+ GEV D + T G+
Sbjct: 157 PFNREDG--KMFIGGLNWETTDDSLRDYFEQFGEVLDCTVMRDSTTGR 202
Score = 25.8 bits (54), Expect = 6.0
Identities = 13/38 (34%), Positives = 20/38 (52%), Gaps = 3/38 (7%)
Frame = +2
Query: 254 RDRYTRESRGFAFVRFFERRDAEEALDT---MDGRMLD 358
RD T SRGF F+ F + E + +DG+++D
Sbjct: 196 RDSTTGRSRGFGFLTFKNPKCVNEVMSKEHHLDGKIID 233
>SPBC1D7.04 |mlo3||RNA annealing factor Mlo3|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 199
Score = 28.3 bits (60), Expect = 1.1
Identities = 13/37 (35%), Positives = 24/37 (64%), Gaps = 1/37 (2%)
Frame = +2
Query: 275 SRGFAFVRFFERRDAEEALDTMDGRMLDG-RELRVQM 382
S+G A + F DA A + +GR++DG R+++V++
Sbjct: 95 SKGIATIIFSRPGDATRAYEQYEGRLVDGTRKMKVEI 131
>SPBC17G9.05 |rct1|cyp6|RRM-containing cyclophilin regulating
transcription Rct1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 432
Score = 27.9 bits (59), Expect = 1.5
Identities = 12/44 (27%), Positives = 22/44 (50%)
Frame = +2
Query: 254 RDRYTRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMA 385
RD+ T +S +AF+ F + E+A M ++D + V +
Sbjct: 277 RDKETGDSLQYAFIEFDNKESVEKAYFKMQNVLIDDSRIHVDFS 320
>SPBC365.04c |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 233
Score = 27.9 bits (59), Expect = 1.5
Identities = 16/43 (37%), Positives = 23/43 (53%)
Frame = +3
Query: 147 DGMVSLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPEIGTQGK 275
D V L V NL ++ E L+ F+R G+V + IP T G+
Sbjct: 89 DRKVILFVGNLPKDSSVETLQLHFKRAGQVPSVRIPTDKTSGR 131
>SPBC21B10.07 |||glycosyl hydrolase family 16|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 419
Score = 27.9 bits (59), Expect = 1.5
Identities = 13/36 (36%), Positives = 23/36 (63%)
Frame = -3
Query: 177 DYLLLTRPCHRFVAEVFRNSF*IV*IFSSNQTNLII 70
D++ +T P H FV + RNS + + S+N +N+I+
Sbjct: 145 DFMNITDPTHGFVQYLDRNSSAKLGLISANSSNVIM 180
>SPAC27D7.03c |mei2||RNA-binding protein involved in meiosis
Mei2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 750
Score = 27.5 bits (58), Expect = 2.0
Identities = 12/26 (46%), Positives = 18/26 (69%)
Frame = +2
Query: 299 FFERRDAEEALDTMDGRMLDGRELRV 376
F++ RDA ALD +DGR++ L+V
Sbjct: 336 FYDTRDASFALDELDGRIIHNCCLQV 361
>SPAC16C9.04c |||CCR4-Not complex subunit Mot2 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 489
Score = 27.1 bits (57), Expect = 2.6
Identities = 10/28 (35%), Positives = 17/28 (60%)
Frame = +2
Query: 290 FVRFFERRDAEEALDTMDGRMLDGRELR 373
++ + + DA A+ +DG + DGR LR
Sbjct: 169 YITYQRKEDAARAIAAIDGSVSDGRHLR 196
>SPAC1610.03c |crp79|meu5|poly|Schizosaccharomyces pombe|chr
1|||Manual
Length = 710
Score = 26.6 bits (56), Expect = 3.5
Identities = 13/37 (35%), Positives = 21/37 (56%)
Frame = +2
Query: 275 SRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMA 385
S+G+ FV F + A A DT++G M+ + + V A
Sbjct: 424 SKGYGFVAFRQIEAAVRAKDTLNGMMVGKKRIFVCFA 460
>SPCC1827.05c |||nucleolar RNA-binding protein NIFK
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 276
Score = 26.6 bits (56), Expect = 3.5
Identities = 14/44 (31%), Positives = 24/44 (54%)
Frame = +2
Query: 251 SRDRYTRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQM 382
SR+R T S+ +AF+ F A +TM +L G+ L+ ++
Sbjct: 137 SRNRKTGSSKHYAFIEFESLDVANVVAETMHNYLLYGKLLQCKV 180
>SPBC8D2.09c |||U2 snRNP-associated protein Msl1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 111
Score = 25.4 bits (53), Expect = 8.0
Identities = 13/40 (32%), Positives = 22/40 (55%)
Frame = +2
Query: 266 TRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMA 385
T + RG A V FF+ A A+ + + G+E+++Q A
Sbjct: 42 TPKMRGQAHVVFFDPSAAAIAMKALKNFIFFGKEMKIQYA 81
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,545,036
Number of Sequences: 5004
Number of extensions: 48275
Number of successful extensions: 179
Number of sequences better than 10.0: 31
Number of HSP's better than 10.0 without gapping: 160
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 179
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 327172622
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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