Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV060430.seq
(704 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_43251| Best HMM Match : No HMM Matches (HMM E-Value=.) 82 4e-16
SB_23532| Best HMM Match : No HMM Matches (HMM E-Value=.) 47 2e-05
SB_1160| Best HMM Match : RRM_1 (HMM E-Value=1.5e-07) 44 9e-05
SB_28395| Best HMM Match : RRM_1 (HMM E-Value=3.9e-25) 44 2e-04
SB_3033| Best HMM Match : RRM_1 (HMM E-Value=2.3e-20) 44 2e-04
SB_11682| Best HMM Match : No HMM Matches (HMM E-Value=.) 43 3e-04
SB_11683| Best HMM Match : No HMM Matches (HMM E-Value=.) 42 5e-04
SB_52510| Best HMM Match : RRM_1 (HMM E-Value=8.1e-21) 41 9e-04
SB_2543| Best HMM Match : No HMM Matches (HMM E-Value=.) 41 9e-04
SB_41429| Best HMM Match : No HMM Matches (HMM E-Value=.) 39 0.005
SB_1873| Best HMM Match : No HMM Matches (HMM E-Value=.) 37 0.014
SB_59562| Best HMM Match : RRM_1 (HMM E-Value=6.1e-23) 37 0.018
SB_40573| Best HMM Match : RRM_1 (HMM E-Value=1.8e-39) 37 0.018
SB_45423| Best HMM Match : RRM_1 (HMM E-Value=0) 36 0.032
SB_8823| Best HMM Match : No HMM Matches (HMM E-Value=.) 36 0.042
SB_48466| Best HMM Match : Pro_isomerase (HMM E-Value=0) 35 0.056
SB_44114| Best HMM Match : RRM_1 (HMM E-Value=9.9e-35) 35 0.056
SB_23537| Best HMM Match : No HMM Matches (HMM E-Value=.) 35 0.056
SB_52333| Best HMM Match : RRM_1 (HMM E-Value=2.3e-16) 34 0.098
SB_27480| Best HMM Match : RRM_1 (HMM E-Value=3.7e-18) 34 0.098
SB_41866| Best HMM Match : RRM_1 (HMM E-Value=0) 34 0.098
SB_38796| Best HMM Match : RRM_1 (HMM E-Value=0) 33 0.17
SB_10628| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.17
SB_34757| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.23
SB_46050| Best HMM Match : RRM_1 (HMM E-Value=1.7e-33) 33 0.30
SB_31414| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.30
SB_16504| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.30
SB_20581| Best HMM Match : RRM_1 (HMM E-Value=1.7e-07) 32 0.39
SB_51113| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.52
SB_29577| Best HMM Match : RRM_1 (HMM E-Value=8.5e-15) 32 0.52
SB_2700| Best HMM Match : RRM_1 (HMM E-Value=0) 32 0.52
SB_50249| Best HMM Match : RRM_1 (HMM E-Value=0) 31 0.91
SB_12089| Best HMM Match : RRM_1 (HMM E-Value=7.4e-13) 31 1.2
SB_28396| Best HMM Match : RRM_1 (HMM E-Value=0.00035) 31 1.2
SB_55826| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.6
SB_37378| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.1
SB_53070| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.8
SB_37198| Best HMM Match : RRM_1 (HMM E-Value=7.8e-23) 29 2.8
SB_52029| Best HMM Match : RRM_1 (HMM E-Value=1e-18) 29 2.8
SB_8144| Best HMM Match : VWA (HMM E-Value=3.1e-16) 29 2.8
SB_7937| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.8
SB_15297| Best HMM Match : RRM_1 (HMM E-Value=2.2e-18) 29 3.7
SB_14150| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.7
SB_41292| Best HMM Match : RRM_1 (HMM E-Value=0.0085) 29 3.7
SB_35194| Best HMM Match : EGF_2 (HMM E-Value=0) 29 3.7
SB_3536| Best HMM Match : RRM_1 (HMM E-Value=0) 29 3.7
SB_41412| Best HMM Match : RRM_1 (HMM E-Value=2.9e-35) 29 4.9
SB_29861| Best HMM Match : RRM_1 (HMM E-Value=1.10002e-42) 29 4.9
SB_38878| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.9
SB_38456| Best HMM Match : BTB (HMM E-Value=8.8e-26) 29 4.9
SB_6097| Best HMM Match : Chitin_bind_3 (HMM E-Value=0.7) 29 4.9
SB_33676| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.4
SB_20899| Best HMM Match : RRM_1 (HMM E-Value=2.3e-15) 28 6.4
SB_46162| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.4
SB_463| Best HMM Match : RRM_1 (HMM E-Value=3.3e-16) 28 8.5
>SB_43251| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 204
Score = 82.2 bits (194), Expect = 4e-16
Identities = 43/91 (47%), Positives = 51/91 (56%)
Frame = +3
Query: 129 RPPPRIDGMVSLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPEIGTQGKVEDSPS*GFSS 308
R PP IDGM SLKVDNLTYRTT EDL++VF++ G++GDIYIP + F
Sbjct: 7 RGPPEIDGMTSLKVDNLTYRTTVEDLKQVFKKYGDLGDIYIPRDRNTHESRGFAFVRFYE 66
Query: 309 VVMLKKPWTRWTDECWTAGNFAFRWRDMVAP 401
+ C A F FRWRDMV P
Sbjct: 67 KRDAEDAMDCMDATCLMAEKFVFRWRDMVVP 97
>SB_23532| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 364
Score = 46.8 bits (106), Expect = 2e-05
Identities = 19/43 (44%), Positives = 30/43 (69%)
Frame = +2
Query: 257 DRYTRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMA 385
DR T+ RGFAFV F +++ E+A++ +DG+ DGR ++V A
Sbjct: 263 DRETQRPRGFAFVTFGSKKNMEDAINELDGQEFDGRSMKVNQA 305
Score = 41.5 bits (93), Expect = 6e-04
Identities = 19/43 (44%), Positives = 25/43 (58%)
Frame = +2
Query: 257 DRYTRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMA 385
DR T RGF FV F + ++A+D DG LDGR ++V A
Sbjct: 43 DRETGRPRGFGFVTFGSEDEMDKAIDKFDGEDLDGRPMKVNKA 85
>SB_1160| Best HMM Match : RRM_1 (HMM E-Value=1.5e-07)
Length = 252
Score = 44.4 bits (100), Expect = 9e-05
Identities = 20/43 (46%), Positives = 27/43 (62%)
Frame = +2
Query: 257 DRYTRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMA 385
DR T RGF FV F + + E+A+D DG+ LDGR ++V A
Sbjct: 130 DRETGRPRGFGFVTFGSKEEMEKAIDEFDGQDLDGRPMKVNEA 172
>SB_28395| Best HMM Match : RRM_1 (HMM E-Value=3.9e-25)
Length = 159
Score = 43.6 bits (98), Expect = 2e-04
Identities = 19/43 (44%), Positives = 26/43 (60%)
Frame = +2
Query: 257 DRYTRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMA 385
DR T RGF FV F + + E+A+D DG+ DGR ++V A
Sbjct: 38 DRETGRPRGFGFVTFGSKEEMEKAIDEFDGQDFDGRPMKVNQA 80
>SB_3033| Best HMM Match : RRM_1 (HMM E-Value=2.3e-20)
Length = 1313
Score = 43.6 bits (98), Expect = 2e-04
Identities = 19/41 (46%), Positives = 27/41 (65%)
Frame = +2
Query: 257 DRYTRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQ 379
DR SRGFA+V + + + E+AL MDG +DG+E+ VQ
Sbjct: 1191 DRTNNLSRGFAYVEYVDPEECEKALKHMDGGQIDGQEIAVQ 1231
>SB_11682| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 184
Score = 42.7 bits (96), Expect = 3e-04
Identities = 19/39 (48%), Positives = 28/39 (71%)
Frame = +2
Query: 269 RESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMA 385
R GFAF F +RRDAE+A+ +DGR + G+ +RV++A
Sbjct: 65 RNPPGFAFCIFDDRRDAEDAVRELDGRYICGQRVRVELA 103
>SB_11683| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 204
Score = 41.9 bits (94), Expect = 5e-04
Identities = 19/39 (48%), Positives = 27/39 (69%)
Frame = +2
Query: 269 RESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMA 385
R GFAF F +RRDAE+A+ +DGR + G+ RV++A
Sbjct: 35 RNPPGFAFCVFEDRRDAEDAVRELDGRYICGQRARVELA 73
>SB_52510| Best HMM Match : RRM_1 (HMM E-Value=8.1e-21)
Length = 304
Score = 41.1 bits (92), Expect = 9e-04
Identities = 17/45 (37%), Positives = 28/45 (62%)
Frame = +2
Query: 251 SRDRYTRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMA 385
++D++T +S+GFAF+ F R DA A++ + G D L V+ A
Sbjct: 213 AKDKFTNQSKGFAFINFVHREDAARAIEVLSGFGYDHLILNVEWA 257
>SB_2543| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 215
Score = 41.1 bits (92), Expect = 9e-04
Identities = 17/44 (38%), Positives = 30/44 (68%)
Frame = +2
Query: 254 RDRYTRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMA 385
RD+ TRESRG AF+ F +R+ A+ A+ ++ + + GR ++ +A
Sbjct: 43 RDKETRESRGVAFILFIDRQSAQNAVAAVNKKQMFGRTIKCTIA 86
>SB_41429| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 732
Score = 38.7 bits (86), Expect = 0.005
Identities = 18/43 (41%), Positives = 27/43 (62%)
Frame = +2
Query: 257 DRYTRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMA 385
DR + ESRGF FV + + A++ L M G +DGR++R+ A
Sbjct: 320 DRESGESRGFGFVDYDDVETAKKVLSEMAGAEVDGRQVRLDFA 362
Score = 27.9 bits (59), Expect = 8.5
Identities = 15/35 (42%), Positives = 18/35 (51%)
Frame = +3
Query: 159 SLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPEIG 263
SL V NL+Y TT + L FE C I+ E G
Sbjct: 290 SLIVRNLSYDTTTDSLGAAFEGCSNAKVIFDRESG 324
>SB_1873| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 389
Score = 37.1 bits (82), Expect = 0.014
Identities = 18/44 (40%), Positives = 26/44 (59%)
Frame = +2
Query: 254 RDRYTRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMA 385
RDR T +S G+AFV + DA +A+ M+G L + L+V A
Sbjct: 60 RDRATGQSLGYAFVNYDNPDDANKAVREMNGARLQNKTLKVSFA 103
Score = 31.9 bits (69), Expect = 0.52
Identities = 13/35 (37%), Positives = 23/35 (65%)
Frame = +2
Query: 272 ESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRV 376
E RG FVRF +R +A+ A+D ++ + L G +++
Sbjct: 151 EGRGTGFVRFDKRCEAQTAIDDLNNKTLPGTNVKL 185
>SB_59562| Best HMM Match : RRM_1 (HMM E-Value=6.1e-23)
Length = 201
Score = 36.7 bits (81), Expect = 0.018
Identities = 17/39 (43%), Positives = 25/39 (64%)
Frame = +2
Query: 269 RESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMA 385
R GFAFV + + RDAEEA+ +DG + R +RV+ +
Sbjct: 37 RNPPGFAFVEYEDYRDAEEAVRELDGANVCDRTIRVEFS 75
>SB_40573| Best HMM Match : RRM_1 (HMM E-Value=1.8e-39)
Length = 507
Score = 36.7 bits (81), Expect = 0.018
Identities = 21/50 (42%), Positives = 27/50 (54%), Gaps = 4/50 (8%)
Frame = +2
Query: 242 YLHSRDRYTRESRG----FAFVRFFERRDAEEALDTMDGRMLDGRELRVQ 379
Y H D + RG FAFV F + RDAE+A+ DG DG +RV+
Sbjct: 284 YGHIADVDLKNRRGAGPPFAFVEFEDPRDAEDAVKGRDGHEFDGYRIRVE 333
>SB_45423| Best HMM Match : RRM_1 (HMM E-Value=0)
Length = 514
Score = 35.9 bits (79), Expect = 0.032
Identities = 16/40 (40%), Positives = 25/40 (62%)
Frame = +2
Query: 257 DRYTRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRV 376
D T S+G+ FV+F E A+ A++ M+G L GR L++
Sbjct: 276 DSETNRSKGYGFVQFREAEAAKRAMEQMNGFELAGRPLKI 315
>SB_8823| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1309
Score = 35.5 bits (78), Expect = 0.042
Identities = 15/44 (34%), Positives = 25/44 (56%)
Frame = +2
Query: 254 RDRYTRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMA 385
+D +S+GF FV F R DA +A+ MD + G++++ A
Sbjct: 546 KDPAKNKSKGFGFVSFVRREDAAKAIAEMDSVTIGGKQVKTNWA 589
>SB_48466| Best HMM Match : Pro_isomerase (HMM E-Value=0)
Length = 298
Score = 35.1 bits (77), Expect = 0.056
Identities = 18/43 (41%), Positives = 23/43 (53%)
Frame = +2
Query: 257 DRYTRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMA 385
D T + RGF FV F D A+D M+ L GR +RV +A
Sbjct: 39 DYTTSKHRGFGFVEFEFAEDTAAAIDNMNESELFGRTIRVNLA 81
>SB_44114| Best HMM Match : RRM_1 (HMM E-Value=9.9e-35)
Length = 929
Score = 35.1 bits (77), Expect = 0.056
Identities = 15/36 (41%), Positives = 24/36 (66%)
Frame = +2
Query: 278 RGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMA 385
RG+ FV F + RDAE+A+ ++GR L G + V+ +
Sbjct: 722 RGYGFVEFDDHRDAEDAVHDLNGRDLIGERVVVEFS 757
Score = 28.7 bits (61), Expect = 4.9
Identities = 22/55 (40%), Positives = 33/55 (60%), Gaps = 2/55 (3%)
Frame = +3
Query: 123 YGRPPPRIDGMVSLKVDNLTYRTTPEDLRRVFERCGEV--GDIYIPEIGTQGKVE 281
YG PP R + S+ V+NL+ RT+ +DL+ F + G+V D + IG +G VE
Sbjct: 790 YG-PPVRTN--YSVIVENLSSRTSWQDLKDYFRKYGKVTYADAHKKRIG-EGVVE 840
>SB_23537| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 371
Score = 35.1 bits (77), Expect = 0.056
Identities = 14/34 (41%), Positives = 23/34 (67%)
Frame = +2
Query: 275 SRGFAFVRFFERRDAEEALDTMDGRMLDGRELRV 376
SRGF FV F DA+ A+ +++G+ + GR L++
Sbjct: 98 SRGFGFVTFANPEDAQTAVKSLNGKEVQGRTLKI 131
>SB_52333| Best HMM Match : RRM_1 (HMM E-Value=2.3e-16)
Length = 76
Score = 34.3 bits (75), Expect = 0.098
Identities = 15/39 (38%), Positives = 25/39 (64%)
Frame = +2
Query: 269 RESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMA 385
R+ R + FV F +R A +A+D ++G +DG +L V +A
Sbjct: 32 RKIRDYGFVYFAKRESAVQAIDGINGAYIDGCKLEVSLA 70
>SB_27480| Best HMM Match : RRM_1 (HMM E-Value=3.7e-18)
Length = 209
Score = 34.3 bits (75), Expect = 0.098
Identities = 16/44 (36%), Positives = 24/44 (54%)
Frame = +2
Query: 254 RDRYTRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMA 385
RD+ T ES +AF+ F + D E A MD ++D R + V +
Sbjct: 153 RDQKTGESLQYAFIEFEKDEDCERAYFKMDNVLIDDRRIHVDFS 196
>SB_41866| Best HMM Match : RRM_1 (HMM E-Value=0)
Length = 718
Score = 34.3 bits (75), Expect = 0.098
Identities = 14/33 (42%), Positives = 23/33 (69%)
Frame = +2
Query: 272 ESRGFAFVRFFERRDAEEALDTMDGRMLDGREL 370
+S+GF FV F +AEEA++ ++G+ + GR L
Sbjct: 147 KSKGFGFVSFETPEEAEEAVNVLNGKEIGGRRL 179
Score = 31.1 bits (67), Expect = 0.91
Identities = 15/37 (40%), Positives = 23/37 (62%)
Frame = +2
Query: 275 SRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMA 385
S+GF FV F +A +A+ M+GR+L + L V +A
Sbjct: 251 SKGFGFVCFSSPEEATKAVTEMNGRILISKPLYVALA 287
>SB_38796| Best HMM Match : RRM_1 (HMM E-Value=0)
Length = 382
Score = 33.5 bits (73), Expect = 0.17
Identities = 16/44 (36%), Positives = 25/44 (56%)
Frame = +2
Query: 254 RDRYTRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMA 385
RD T S+GFAF+ F ++ A++ M+G+ L R + V A
Sbjct: 134 RDSDTGNSKGFAFINFASFDASDAAIEAMNGQYLCNRPITVSYA 177
Score = 32.7 bits (71), Expect = 0.30
Identities = 15/44 (34%), Positives = 25/44 (56%)
Frame = +2
Query: 254 RDRYTRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMA 385
+DR T+ +G+ FV F DA+ A+ M+ + G+ +RV A
Sbjct: 46 KDRITQLHQGYGFVEFLGEEDADYAIKVMNMIKVYGKPIRVNKA 89
>SB_10628| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1208
Score = 33.5 bits (73), Expect = 0.17
Identities = 15/41 (36%), Positives = 25/41 (60%)
Frame = +2
Query: 254 RDRYTRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRV 376
RD+ T + +GF F+ + ++R A+D +G L GR +RV
Sbjct: 12 RDKKTGKQKGFCFLCYEDQRSTILAVDNFNGIKLGGRTIRV 52
>SB_34757| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 435
Score = 33.1 bits (72), Expect = 0.23
Identities = 18/39 (46%), Positives = 23/39 (58%), Gaps = 3/39 (7%)
Frame = +2
Query: 257 DRYTRESRGFAFVRFFERRDAEEALDT---MDGRMLDGR 364
D TR SRGF FVRF + DA+ L T + GR+ + R
Sbjct: 149 DPNTRRSRGFGFVRFKKDEDAKNVLSTSHRIQGRLCEVR 187
Score = 30.7 bits (66), Expect = 1.2
Identities = 16/43 (37%), Positives = 22/43 (51%)
Frame = +3
Query: 129 RPPPRIDGMVSLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPE 257
RP ++ L V L TT + L F + GEV D+YIP+
Sbjct: 190 RPKEELNVPKKLFVGRLPESTTEKTLMEYFAQFGEVTDVYIPK 232
>SB_46050| Best HMM Match : RRM_1 (HMM E-Value=1.7e-33)
Length = 392
Score = 32.7 bits (71), Expect = 0.30
Identities = 15/43 (34%), Positives = 25/43 (58%)
Frame = +2
Query: 257 DRYTRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMA 385
DR T + +G+ F + ++ A A+ ++G L+GR LRV A
Sbjct: 59 DRETGKPKGYGFCEYKDQETALSAMRNLNGYELNGRALRVDSA 101
>SB_31414| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 610
Score = 32.7 bits (71), Expect = 0.30
Identities = 13/39 (33%), Positives = 25/39 (64%)
Frame = +2
Query: 269 RESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMA 385
++ + +AFV F ER A +A++ DG+ +DG ++ +A
Sbjct: 359 KKLKDYAFVHFTERDHALKAIEETDGKEMDGLKIEASLA 397
>SB_16504| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 252
Score = 32.7 bits (71), Expect = 0.30
Identities = 13/35 (37%), Positives = 20/35 (57%)
Frame = +2
Query: 278 RGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQM 382
RG+AF+ + RD A DG+ +DGR + V +
Sbjct: 47 RGYAFIEYEHERDMHAAYKHADGKKIDGRRIVVDV 81
>SB_20581| Best HMM Match : RRM_1 (HMM E-Value=1.7e-07)
Length = 97
Score = 32.3 bits (70), Expect = 0.39
Identities = 13/32 (40%), Positives = 21/32 (65%)
Frame = +2
Query: 254 RDRYTRESRGFAFVRFFERRDAEEALDTMDGR 349
+D+ T+E+RG +V+F + A A + MDGR
Sbjct: 56 KDKATKENRGVCYVKFVKASSAALACEEMDGR 87
>SB_51113| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 871
Score = 31.9 bits (69), Expect = 0.52
Identities = 14/34 (41%), Positives = 21/34 (61%)
Frame = +2
Query: 275 SRGFAFVRFFERRDAEEALDTMDGRMLDGRELRV 376
SRGFAFV + +AE+ +GR ++G +RV
Sbjct: 246 SRGFAFVDYATAEEAEKGQRAHNGRQVEGSNIRV 279
>SB_29577| Best HMM Match : RRM_1 (HMM E-Value=8.5e-15)
Length = 171
Score = 31.9 bits (69), Expect = 0.52
Identities = 17/41 (41%), Positives = 24/41 (58%)
Frame = +2
Query: 251 SRDRYTRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELR 373
SR + + S+G+AFV F A+ A DTM M+ GR L+
Sbjct: 130 SRSKKSARSKGYAFVEFACDEVAKIAADTMHNYMMFGRLLK 170
>SB_2700| Best HMM Match : RRM_1 (HMM E-Value=0)
Length = 593
Score = 31.9 bits (69), Expect = 0.52
Identities = 16/42 (38%), Positives = 25/42 (59%)
Frame = +2
Query: 251 SRDRYTRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRV 376
S D + +GFAFV + A+ AL+ M+G +L GR ++V
Sbjct: 134 SWDPLNMKHKGFAFVEYDLPEAAQLALEQMNGVLLGGRNIKV 175
>SB_50249| Best HMM Match : RRM_1 (HMM E-Value=0)
Length = 420
Score = 31.1 bits (67), Expect = 0.91
Identities = 13/28 (46%), Positives = 19/28 (67%)
Frame = +3
Query: 162 LKVDNLTYRTTPEDLRRVFERCGEVGDI 245
L V +L + TT ++LR FE+CGE+ I
Sbjct: 238 LMVQDLDFDTTVDELREYFEKCGELTGI 265
>SB_12089| Best HMM Match : RRM_1 (HMM E-Value=7.4e-13)
Length = 260
Score = 30.7 bits (66), Expect = 1.2
Identities = 12/34 (35%), Positives = 22/34 (64%)
Frame = +2
Query: 281 GFAFVRFFERRDAEEALDTMDGRMLDGRELRVQM 382
GF FV F +A +A + ++G ++DGR++ V +
Sbjct: 125 GFGFVTFNTAAEANKAREKLNGTIVDGRKVEVSL 158
>SB_28396| Best HMM Match : RRM_1 (HMM E-Value=0.00035)
Length = 258
Score = 30.7 bits (66), Expect = 1.2
Identities = 15/37 (40%), Positives = 19/37 (51%)
Frame = +2
Query: 275 SRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMA 385
SRGF FV + D E+ DG +GR L+V A
Sbjct: 82 SRGFGFVTLENQEDLEDVTRKFDGFEYEGRRLKVAEA 118
>SB_55826| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1199
Score = 30.3 bits (65), Expect = 1.6
Identities = 14/31 (45%), Positives = 20/31 (64%)
Frame = +3
Query: 201 DLRRVFERCGEVGDIYIPEIGTQGKVEDSPS 293
D +R E GE G+ + PE GT+G+ + SPS
Sbjct: 646 DSKRKEEERGEGGEEFSPEEGTEGRDDGSPS 676
>SB_37378| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 781
Score = 29.9 bits (64), Expect = 2.1
Identities = 12/30 (40%), Positives = 19/30 (63%)
Frame = +2
Query: 254 RDRYTRESRGFAFVRFFERRDAEEALDTMD 343
RD TRE++G+ +V+F + A AL+ D
Sbjct: 86 RDHKTRENKGYGYVKFHKSSTAAMALENCD 115
>SB_53070| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 347
Score = 29.5 bits (63), Expect = 2.8
Identities = 13/42 (30%), Positives = 23/42 (54%)
Frame = +2
Query: 257 DRYTRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQM 382
D+ T S+ F FV + A+ A+ M+G + + L+VQ+
Sbjct: 296 DKQTNMSKCFGFVSYDNVMSAQNAIQHMNGFQIGAKRLKVQL 337
>SB_37198| Best HMM Match : RRM_1 (HMM E-Value=7.8e-23)
Length = 362
Score = 29.5 bits (63), Expect = 2.8
Identities = 13/42 (30%), Positives = 23/42 (54%)
Frame = +2
Query: 257 DRYTRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQM 382
D+ T S+ F FV + A+ A+ M+G + + L+VQ+
Sbjct: 311 DKQTNMSKCFGFVSYDNVMSAQNAIQHMNGFQIGAKRLKVQL 352
>SB_52029| Best HMM Match : RRM_1 (HMM E-Value=1e-18)
Length = 462
Score = 29.5 bits (63), Expect = 2.8
Identities = 14/38 (36%), Positives = 24/38 (63%)
Frame = +2
Query: 269 RESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQM 382
++S+G V+F +A A++ + G+ML R LRV+M
Sbjct: 222 KKSKGMGTVQFETPMEAMNAVNLLHGKMLMDRALRVRM 259
>SB_8144| Best HMM Match : VWA (HMM E-Value=3.1e-16)
Length = 193
Score = 29.5 bits (63), Expect = 2.8
Identities = 14/36 (38%), Positives = 18/36 (50%), Gaps = 2/36 (5%)
Frame = -1
Query: 431 CDRNDSCMAMRGDHIAPSEREVP--CRPTFVRPSCP 330
C+ +D C G+ P E E P CR T + SCP
Sbjct: 27 CNSDDKCSP--GERCRPQENECPLKCRKTIKKKSCP 60
>SB_7937| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 618
Score = 29.5 bits (63), Expect = 2.8
Identities = 15/41 (36%), Positives = 21/41 (51%)
Frame = +2
Query: 263 YTRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMA 385
+ + +GF F+R R AE A +D GR LRV+ A
Sbjct: 82 FINKEKGFGFIRLDTRLHAEAAKAGLDMATRKGRTLRVRFA 122
>SB_15297| Best HMM Match : RRM_1 (HMM E-Value=2.2e-18)
Length = 291
Score = 29.1 bits (62), Expect = 3.7
Identities = 15/44 (34%), Positives = 24/44 (54%)
Frame = +2
Query: 254 RDRYTRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMA 385
+DR T++S+G+ FV DA E M++GR+ V +A
Sbjct: 43 KDRVTKKSKGYGFVT-MATSDAAELACKNKRPMIEGRQANVNLA 85
>SB_14150| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 429
Score = 29.1 bits (62), Expect = 3.7
Identities = 15/30 (50%), Positives = 15/30 (50%), Gaps = 1/30 (3%)
Frame = -1
Query: 497 GN-GCGYDCASNYDGGNET*TCACDRNDSC 411
GN GCGY C NY GN CD N C
Sbjct: 171 GNYGCGYGCDGNYGCGN-----GCDGNYGC 195
>SB_41292| Best HMM Match : RRM_1 (HMM E-Value=0.0085)
Length = 292
Score = 29.1 bits (62), Expect = 3.7
Identities = 13/35 (37%), Positives = 24/35 (68%), Gaps = 1/35 (2%)
Frame = +2
Query: 284 FAFVRFFERRDAEEALDTMDGR-MLDGRELRVQMA 385
+AFV+F+ + A A + ++G+ ++DG L+VQ A
Sbjct: 80 YAFVKFYSAKAALRAKEEVNGKWLIDGNILKVQFA 114
>SB_35194| Best HMM Match : EGF_2 (HMM E-Value=0)
Length = 960
Score = 29.1 bits (62), Expect = 3.7
Identities = 12/34 (35%), Positives = 15/34 (44%)
Frame = -1
Query: 497 GNGCGYDCASNYDGGNET*TCACDRNDSCMAMRG 396
GN C C + G N C C N +C A+ G
Sbjct: 652 GNACDRPCPAGKHGANCGLKCLCANNGTCNAITG 685
>SB_3536| Best HMM Match : RRM_1 (HMM E-Value=0)
Length = 1026
Score = 29.1 bits (62), Expect = 3.7
Identities = 16/47 (34%), Positives = 23/47 (48%), Gaps = 4/47 (8%)
Frame = +2
Query: 257 DRYTRESRGFAFVRFFERRDAEEALDTMD----GRMLDGRELRVQMA 385
D T+ S+G AFV++ + L D G LDG L+V +A
Sbjct: 450 DHLTQHSKGSAFVKYRSAESVTQCLAATDEDSEGLFLDGNRLQVDLA 496
>SB_41412| Best HMM Match : RRM_1 (HMM E-Value=2.9e-35)
Length = 1118
Score = 28.7 bits (61), Expect = 4.9
Identities = 11/36 (30%), Positives = 22/36 (61%)
Frame = +2
Query: 269 RESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRV 376
++ +G + F +RD + AL +DG L+G+ +R+
Sbjct: 130 KQRQGEGVIEFSCKRDLKRALKKLDGEELNGKRIRL 165
>SB_29861| Best HMM Match : RRM_1 (HMM E-Value=1.10002e-42)
Length = 1531
Score = 28.7 bits (61), Expect = 4.9
Identities = 15/31 (48%), Positives = 19/31 (61%)
Frame = +3
Query: 159 SLKVDNLTYRTTPEDLRRVFERCGEVGDIYI 251
+L V N+ TT DL+ FER GEV D+ I
Sbjct: 250 TLFVGNIEKTTTYGDLKEAFERYGEVIDVDI 280
>SB_38878| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 436
Score = 28.7 bits (61), Expect = 4.9
Identities = 16/55 (29%), Positives = 22/55 (40%), Gaps = 3/55 (5%)
Frame = -1
Query: 512 EQSDCGNGCGYDCASNYDGGNET*TCACD---RNDSCMAMRGDHIAPSEREVPCR 357
E+ G + YDG T D ND + M G H AP R++ C+
Sbjct: 316 EELSKSRGKSHPFDEQYDGDRNTQIALMDMPHENDVVVEMNGRHAAPRHRKIRCQ 370
>SB_38456| Best HMM Match : BTB (HMM E-Value=8.8e-26)
Length = 1410
Score = 28.7 bits (61), Expect = 4.9
Identities = 12/41 (29%), Positives = 19/41 (46%)
Frame = -1
Query: 533 PLELFESEQSDCGNGCGYDCASNYDGGNET*TCACDRNDSC 411
P L E C +GC +C+ N +G + + C+C C
Sbjct: 1346 PSSLLELSTCGCKSGCQRNCSFNNNGLSCSEACSCIAGTDC 1386
>SB_6097| Best HMM Match : Chitin_bind_3 (HMM E-Value=0.7)
Length = 325
Score = 28.7 bits (61), Expect = 4.9
Identities = 14/48 (29%), Positives = 21/48 (43%), Gaps = 1/48 (2%)
Frame = +3
Query: 249 IPEIGTQGKVEDSPS*GFSSVVMLKKPWTR-WTDECWTAGNFAFRWRD 389
IP I G + P+ + + K P R WT G F ++WR+
Sbjct: 14 IPHISGHGYLSIPPARNYCGALKDKGPCVRNWTPNELNCGGFVYQWRE 61
>SB_33676| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 828
Score = 28.3 bits (60), Expect = 6.4
Identities = 12/34 (35%), Positives = 21/34 (61%)
Frame = +2
Query: 275 SRGFAFVRFFERRDAEEALDTMDGRMLDGRELRV 376
S GF FV + DA++A+D ++G + + L+V
Sbjct: 87 SYGFGFVDYNTTEDAQKAIDKLNGFTIGNKVLKV 120
>SB_20899| Best HMM Match : RRM_1 (HMM E-Value=2.3e-15)
Length = 876
Score = 28.3 bits (60), Expect = 6.4
Identities = 11/33 (33%), Positives = 23/33 (69%)
Frame = +2
Query: 284 FAFVRFFERRDAEEALDTMDGRMLDGRELRVQM 382
F FV+F + A+EA+ GR+++G+++ V++
Sbjct: 82 FGFVQFETEKGADEAVAKEHGRIINGKKIDVRI 114
>SB_46162| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 291
Score = 28.3 bits (60), Expect = 6.4
Identities = 14/44 (31%), Positives = 22/44 (50%)
Frame = +2
Query: 254 RDRYTRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMA 385
RD+ + SRGF FV A++ M+ + GR + V +A
Sbjct: 41 RDKESGRSRGFGFVLLQSADQIAPAIEKMNQSSVGGRNITVALA 84
>SB_463| Best HMM Match : RRM_1 (HMM E-Value=3.3e-16)
Length = 842
Score = 27.9 bits (59), Expect = 8.5
Identities = 13/39 (33%), Positives = 24/39 (61%)
Frame = +2
Query: 254 RDRYTRESRGFAFVRFFERRDAEEALDTMDGRMLDGREL 370
RD T+ SRGF F+ F + + + L++ + LDG+++
Sbjct: 141 RDPVTKRSRGFGFLTFKDPKAVDVVLNS-GAQELDGKKM 178
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,824,897
Number of Sequences: 59808
Number of extensions: 377375
Number of successful extensions: 952
Number of sequences better than 10.0: 55
Number of HSP's better than 10.0 without gapping: 884
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 948
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1853669818
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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