Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV060430.seq
(704 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U23484-3|AAK68298.1| 126|Caenorhabditis elegans Sr protein (spl... 72 4e-13
U23484-2|AAC46767.1| 196|Caenorhabditis elegans Sr protein (spl... 72 4e-13
Z81108-1|CAB03236.1| 83|Caenorhabditis elegans Hypothetical pr... 44 1e-04
Z81108-4|CAB03237.1| 85|Caenorhabditis elegans Hypothetical pr... 42 3e-04
Z50110-2|CAA90446.1| 566|Caenorhabditis elegans Hypothetical pr... 42 3e-04
Z50110-1|CAA90444.1| 692|Caenorhabditis elegans Hypothetical pr... 42 3e-04
Z81106-3|CAB03222.1| 84|Caenorhabditis elegans Hypothetical pr... 42 4e-04
U24123-1|AAA65224.1| 646|Caenorhabditis elegans polyadenylate-b... 42 4e-04
AL032631-4|CAE54917.1| 586|Caenorhabditis elegans Hypothetical ... 42 4e-04
AL032631-2|CAA21572.1| 646|Caenorhabditis elegans Hypothetical ... 42 4e-04
U23172-15|AAN63408.1| 374|Caenorhabditis elegans Hypothetical p... 40 0.001
U23172-12|ABH03526.1| 562|Caenorhabditis elegans Hypothetical p... 40 0.001
AL110485-8|CAB60356.1| 434|Caenorhabditis elegans Hypothetical ... 40 0.001
U28944-7|AAN63457.1| 295|Caenorhabditis elegans Hypothetical pr... 39 0.003
U28944-6|AAN63456.1| 305|Caenorhabditis elegans Hypothetical pr... 39 0.003
U28944-5|AAK68191.1| 408|Caenorhabditis elegans Hypothetical pr... 39 0.003
U28944-4|AAK68192.1| 376|Caenorhabditis elegans Hypothetical pr... 39 0.003
AL132904-14|CAC35847.2| 258|Caenorhabditis elegans Hypothetical... 39 0.003
AF242767-1|AAG36874.1| 258|Caenorhabditis elegans SF2 protein. 39 0.003
U28738-11|AAK68399.3| 166|Caenorhabditis elegans Sr protein (sp... 38 0.007
U28738-10|AAK72066.3| 208|Caenorhabditis elegans Sr protein (sp... 38 0.007
U28738-9|AAA68314.3| 208|Caenorhabditis elegans Sr protein (spl... 38 0.007
AL137227-1|CAB70238.2| 611|Caenorhabditis elegans Hypothetical ... 38 0.007
Z83127-4|CAB05631.1| 872|Caenorhabditis elegans Hypothetical pr... 38 0.009
U41007-10|AAL32214.1| 118|Caenorhabditis elegans Sr protein (sp... 38 0.009
U41007-9|AAL32213.1| 153|Caenorhabditis elegans Sr protein (spl... 38 0.009
U41007-8|AAA82270.1| 179|Caenorhabditis elegans Sr protein (spl... 38 0.009
Z78536-3|CAB01717.2| 360|Caenorhabditis elegans Hypothetical pr... 36 0.021
Z78419-2|CAB01702.1| 154|Caenorhabditis elegans Hypothetical pr... 36 0.037
U41531-7|AAA83161.2| 415|Caenorhabditis elegans Feminizing gene... 36 0.037
U14946-1|AAA67723.1| 415|Caenorhabditis elegans ribonucleoprote... 36 0.037
U80455-1|AAB37881.1| 584|Caenorhabditis elegans Elav-type rna b... 34 0.086
U53931-1|AAA98566.1| 584|Caenorhabditis elegans elav-type ribon... 34 0.086
EF523770-1|ABS18836.1| 513|Caenorhabditis elegans ELAV-type RNA... 34 0.086
EF523769-1|ABS18835.1| 327|Caenorhabditis elegans ELAV-type RNA... 34 0.086
EF523768-1|ABS18834.1| 378|Caenorhabditis elegans ELAV-type RNA... 34 0.086
EF523767-1|ABS18833.1| 193|Caenorhabditis elegans ELAV-type RNA... 34 0.086
EF523766-1|ABS18832.1| 584|Caenorhabditis elegans ELAV-type RNA... 34 0.086
U00052-10|AAK21429.2| 289|Caenorhabditis elegans Rnp (rrm rna b... 34 0.11
Z66521-4|CAD59160.1| 150|Caenorhabditis elegans Hypothetical pr... 33 0.15
Z66521-3|CAD59159.1| 148|Caenorhabditis elegans Hypothetical pr... 33 0.15
Z66521-2|CAA91395.1| 312|Caenorhabditis elegans Hypothetical pr... 33 0.15
Z81037-3|CAB02750.1| 205|Caenorhabditis elegans Hypothetical pr... 33 0.20
Z97628-2|CAB10726.2| 427|Caenorhabditis elegans Hypothetical pr... 33 0.26
Z92826-4|CAB07322.1| 309|Caenorhabditis elegans Hypothetical pr... 33 0.26
Z81080-5|CAB03088.2| 427|Caenorhabditis elegans Hypothetical pr... 33 0.26
Z81080-2|CAD56584.1| 358|Caenorhabditis elegans Hypothetical pr... 33 0.26
Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical pr... 33 0.26
U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA bi... 33 0.26
U23450-2|AAK31468.1| 302|Caenorhabditis elegans Hypothetical pr... 33 0.26
AL117204-22|CAB55151.1| 331|Caenorhabditis elegans Hypothetical... 33 0.26
AC024818-2|AAF60781.1| 302|Caenorhabditis elegans Temporarily a... 33 0.26
Z66521-8|CAA91394.1| 281|Caenorhabditis elegans Hypothetical pr... 30 1.4
Z36238-4|CAD82915.1| 286|Caenorhabditis elegans Hypothetical pr... 30 1.4
Z36238-3|CAA85276.1| 404|Caenorhabditis elegans Hypothetical pr... 30 1.4
U80455-2|AAB37882.2| 420|Caenorhabditis elegans Elav-type rna b... 30 1.4
DQ485531-1|ABF22491.1| 404|Caenorhabditis elegans RNA-binding p... 30 1.4
Z81473-3|CAB03896.4| 514|Caenorhabditis elegans Hypothetical pr... 30 1.9
AY342388-1|AAQ19851.1| 514|Caenorhabditis elegans putative RNA-... 30 1.9
AC024791-23|AAM81102.1| 346|Caenorhabditis elegans Rnp (rrm rna... 30 1.9
AC024791-22|AAF60676.1| 339|Caenorhabditis elegans Rnp (rrm rna... 30 1.9
AC024791-21|AAF60666.1| 749|Caenorhabditis elegans Rnp (rrm rna... 30 1.9
Z50044-2|CAA90354.1| 256|Caenorhabditis elegans Hypothetical pr... 29 2.4
Z36752-6|CAA85327.1| 456|Caenorhabditis elegans Hypothetical pr... 29 2.4
Z35601-1|CAA84667.2| 320|Caenorhabditis elegans Hypothetical pr... 29 2.4
AB036738-1|BAB13470.1| 320|Caenorhabditis elegans neural RNA-bi... 29 2.4
AL032631-3|CAE54916.1| 583|Caenorhabditis elegans Hypothetical ... 29 3.2
AC024826-10|AAM97977.1| 435|Caenorhabditis elegans Hypothetical... 29 3.2
AC024826-8|AAF60795.2| 580|Caenorhabditis elegans Hypothetical ... 29 3.2
AC006696-7|AAF39988.1| 140|Caenorhabditis elegans Hypothetical ... 29 3.2
AC006696-6|AAF39986.1| 141|Caenorhabditis elegans Hypothetical ... 29 3.2
AC006696-5|AAF39987.1| 141|Caenorhabditis elegans Hypothetical ... 29 3.2
Z68297-5|CAC70081.1| 394|Caenorhabditis elegans Hypothetical pr... 29 4.3
Z82262-2|CAB05152.1| 248|Caenorhabditis elegans Hypothetical pr... 28 5.7
Z82057-4|CAB61024.2| 370|Caenorhabditis elegans Hypothetical pr... 28 5.7
Z81119-10|CAB61032.2| 370|Caenorhabditis elegans Hypothetical p... 28 5.7
L39925-1|AAA98782.1| 370|Caenorhabditis elegans cathepsin B-lik... 28 5.7
L39890-1|AAA98788.1| 370|Caenorhabditis elegans cathepsin B-lik... 28 5.7
Z32683-11|CAA83626.1| 142|Caenorhabditis elegans Hypothetical p... 28 7.5
U79157-1|AAC26982.1| 496|Caenorhabditis elegans splicing factor... 28 7.5
U67947-1|AAB07557.2| 1147|Caenorhabditis elegans Hypothetical pr... 28 7.5
U21320-5|AAA62536.2| 332|Caenorhabditis elegans Rnp (rrm rna bi... 28 7.5
U21310-3|AAA62522.2| 1288|Caenorhabditis elegans Hypothetical pr... 28 7.5
AF047651-3|AAZ82848.1| 515|Caenorhabditis elegans Hypothetical ... 28 7.5
AC024875-3|AAK29989.1| 496|Caenorhabditis elegans U2af splicing... 28 7.5
AC024875-2|AAM44400.1| 471|Caenorhabditis elegans U2af splicing... 28 7.5
AC024875-1|AAL00879.1| 474|Caenorhabditis elegans U2af splicing... 28 7.5
Z92813-3|CAB07287.1| 621|Caenorhabditis elegans Hypothetical pr... 27 9.9
Z83240-1|CAB05815.2| 373|Caenorhabditis elegans Hypothetical pr... 27 9.9
D10877-1|BAA01645.1| 346|Caenorhabditis elegans hnRNP like prot... 27 9.9
AY204178-1|AAO39182.1| 373|Caenorhabditis elegans nuclear recep... 27 9.9
AF098501-6|AAL38960.1| 315|Caenorhabditis elegans Hypothetical ... 27 9.9
AF098501-5|AAM69104.1| 335|Caenorhabditis elegans Hypothetical ... 27 9.9
AF098501-4|AAL38959.1| 336|Caenorhabditis elegans Hypothetical ... 27 9.9
AF038613-8|AAL02515.2| 309|Caenorhabditis elegans Human hnrnp a... 27 9.9
AF038613-7|ABB51185.1| 308|Caenorhabditis elegans Human hnrnp a... 27 9.9
AF038613-6|ABB51186.1| 347|Caenorhabditis elegans Human hnrnp a... 27 9.9
AF038613-5|AAB92051.1| 346|Caenorhabditis elegans Human hnrnp a... 27 9.9
>U23484-3|AAK68298.1| 126|Caenorhabditis elegans Sr protein
(splicing factor) protein4, isoform b protein.
Length = 126
Score = 72.1 bits (169), Expect = 4e-13
Identities = 30/44 (68%), Positives = 39/44 (88%)
Frame = +2
Query: 254 RDRYTRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMA 385
RD+Y+R+S+GF FVRF+ERRDAE ALD DG+++DGRELRV +A
Sbjct: 52 RDKYSRQSKGFGFVRFYERRDAEHALDRTDGKLVDGRELRVTLA 95
Score = 65.3 bits (152), Expect = 4e-11
Identities = 26/42 (61%), Positives = 35/42 (83%)
Frame = +3
Query: 129 RPPPRIDGMVSLKVDNLTYRTTPEDLRRVFERCGEVGDIYIP 254
R P I+G+ SLK+DNL+Y+TTP DLRR FER G++GD++IP
Sbjct: 10 RAAPDINGLTSLKIDNLSYQTTPNDLRRTFERYGDIGDVHIP 51
>U23484-2|AAC46767.1| 196|Caenorhabditis elegans Sr protein
(splicing factor) protein4, isoform a protein.
Length = 196
Score = 72.1 bits (169), Expect = 4e-13
Identities = 30/44 (68%), Positives = 39/44 (88%)
Frame = +2
Query: 254 RDRYTRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMA 385
RD+Y+R+S+GF FVRF+ERRDAE ALD DG+++DGRELRV +A
Sbjct: 52 RDKYSRQSKGFGFVRFYERRDAEHALDRTDGKLVDGRELRVTLA 95
Score = 65.3 bits (152), Expect = 4e-11
Identities = 26/42 (61%), Positives = 35/42 (83%)
Frame = +3
Query: 129 RPPPRIDGMVSLKVDNLTYRTTPEDLRRVFERCGEVGDIYIP 254
R P I+G+ SLK+DNL+Y+TTP DLRR FER G++GD++IP
Sbjct: 10 RAAPDINGLTSLKIDNLSYQTTPNDLRRTFERYGDIGDVHIP 51
>Z81108-1|CAB03236.1| 83|Caenorhabditis elegans Hypothetical
protein R09B3.2 protein.
Length = 83
Score = 44.0 bits (99), Expect = 1e-04
Identities = 20/43 (46%), Positives = 27/43 (62%)
Frame = +2
Query: 257 DRYTRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMA 385
DR T RGFAF+ F E A+ A++ M+G +GR LRV +A
Sbjct: 39 DRETGRPRGFAFIEFAEEGSAQRAVEQMNGAEFNGRPLRVNLA 81
>Z81108-4|CAB03237.1| 85|Caenorhabditis elegans Hypothetical
protein R09B3.3 protein.
Length = 85
Score = 42.3 bits (95), Expect = 3e-04
Identities = 21/43 (48%), Positives = 26/43 (60%)
Frame = +2
Query: 257 DRYTRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMA 385
DR T RGFAFV F E A+ A+D +G +GR LRV +A
Sbjct: 38 DRETGRPRGFAFVEFTEEAAAQRAVDQFNGVDFNGRALRVNLA 80
>Z50110-2|CAA90446.1| 566|Caenorhabditis elegans Hypothetical
protein F18H3.3b protein.
Length = 566
Score = 42.3 bits (95), Expect = 3e-04
Identities = 19/41 (46%), Positives = 28/41 (68%)
Frame = +2
Query: 254 RDRYTRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRV 376
RD +R S G+A+V F + DAE ALDTM+ ++ GR +R+
Sbjct: 90 RDNTSRLSLGYAYVNFQQPADAERALDTMNFEVIHGRPMRI 130
Score = 28.3 bits (60), Expect = 5.7
Identities = 13/37 (35%), Positives = 22/37 (59%)
Frame = +2
Query: 275 SRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMA 385
S+GF FV F + +A A+ M+ +M+ + L V +A
Sbjct: 382 SKGFGFVCFEKPEEATAAVTDMNSKMIGAKPLYVALA 418
>Z50110-1|CAA90444.1| 692|Caenorhabditis elegans Hypothetical
protein F18H3.3a protein.
Length = 692
Score = 42.3 bits (95), Expect = 3e-04
Identities = 19/41 (46%), Positives = 28/41 (68%)
Frame = +2
Query: 254 RDRYTRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRV 376
RD +R S G+A+V F + DAE ALDTM+ ++ GR +R+
Sbjct: 90 RDNTSRLSLGYAYVNFQQPADAERALDTMNFEVIHGRPMRI 130
Score = 28.3 bits (60), Expect = 5.7
Identities = 13/37 (35%), Positives = 22/37 (59%)
Frame = +2
Query: 275 SRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMA 385
S+GF FV F + +A A+ M+ +M+ + L V +A
Sbjct: 382 SKGFGFVCFEKPEEATAAVTDMNSKMIGAKPLYVALA 418
>Z81106-3|CAB03222.1| 84|Caenorhabditis elegans Hypothetical
protein R06C1.4 protein.
Length = 84
Score = 41.9 bits (94), Expect = 4e-04
Identities = 20/43 (46%), Positives = 26/43 (60%)
Frame = +2
Query: 257 DRYTRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMA 385
DR T RGFAFV F E A+ A++ ++G +GR LRV A
Sbjct: 40 DRETGRPRGFAFVEFSEEAGAQRAVEQLNGVAFNGRNLRVNYA 82
>U24123-1|AAA65224.1| 646|Caenorhabditis elegans
polyadenylate-binding protein protein.
Length = 646
Score = 41.9 bits (94), Expect = 4e-04
Identities = 19/41 (46%), Positives = 27/41 (65%)
Frame = +2
Query: 254 RDRYTRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRV 376
RD TR S G+A+V F + DAE A+DTM+ L G+ +R+
Sbjct: 65 RDNATRLSLGYAYVNFQQPADAERAMDTMNFEALHGKPMRI 105
Score = 29.1 bits (62), Expect = 3.2
Identities = 11/37 (29%), Positives = 22/37 (59%)
Frame = +2
Query: 272 ESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQM 382
+S+GF FV F +AE A+ + ++G +L++ +
Sbjct: 250 KSKGFGFVAFANPEEAETAVQALHDSTIEGTDLKLHV 286
>AL032631-4|CAE54917.1| 586|Caenorhabditis elegans Hypothetical
protein Y106G6H.2c protein.
Length = 586
Score = 41.9 bits (94), Expect = 4e-04
Identities = 19/41 (46%), Positives = 27/41 (65%)
Frame = +2
Query: 254 RDRYTRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRV 376
RD TR S G+A+V F + DAE A+DTM+ L G+ +R+
Sbjct: 65 RDNATRLSLGYAYVNFQQPADAERAMDTMNFEALHGKPMRI 105
Score = 29.1 bits (62), Expect = 3.2
Identities = 11/37 (29%), Positives = 22/37 (59%)
Frame = +2
Query: 272 ESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQM 382
+S+GF FV F +AE A+ + ++G +L++ +
Sbjct: 190 KSKGFGFVAFANPEEAETAVQALHDSTIEGTDLKLHV 226
>AL032631-2|CAA21572.1| 646|Caenorhabditis elegans Hypothetical
protein Y106G6H.2a protein.
Length = 646
Score = 41.9 bits (94), Expect = 4e-04
Identities = 19/41 (46%), Positives = 27/41 (65%)
Frame = +2
Query: 254 RDRYTRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRV 376
RD TR S G+A+V F + DAE A+DTM+ L G+ +R+
Sbjct: 65 RDNATRLSLGYAYVNFQQPADAERAMDTMNFEALHGKPMRI 105
Score = 29.1 bits (62), Expect = 3.2
Identities = 11/37 (29%), Positives = 22/37 (59%)
Frame = +2
Query: 272 ESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQM 382
+S+GF FV F +AE A+ + ++G +L++ +
Sbjct: 250 KSKGFGFVAFANPEEAETAVQALHDSTIEGTDLKLHV 286
>U23172-15|AAN63408.1| 374|Caenorhabditis elegans Hypothetical
protein F25B5.7d protein.
Length = 374
Score = 40.3 bits (90), Expect = 0.001
Identities = 17/36 (47%), Positives = 26/36 (72%)
Frame = +2
Query: 278 RGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMA 385
+GFAF+R R AE A + +DGR++ GR++RV+ A
Sbjct: 150 KGFAFLRLDTRAHAESAKEAIDGRIIHGRQVRVRFA 185
>U23172-12|ABH03526.1| 562|Caenorhabditis elegans Hypothetical
protein F25B5.7a protein.
Length = 562
Score = 40.3 bits (90), Expect = 0.001
Identities = 17/36 (47%), Positives = 26/36 (72%)
Frame = +2
Query: 278 RGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMA 385
+GFAF+R R AE A + +DGR++ GR++RV+ A
Sbjct: 150 KGFAFLRLDTRAHAESAKEAIDGRIIHGRQVRVRFA 185
>AL110485-8|CAB60356.1| 434|Caenorhabditis elegans Hypothetical
protein Y46G5A.13 protein.
Length = 434
Score = 40.3 bits (90), Expect = 0.001
Identities = 18/44 (40%), Positives = 25/44 (56%)
Frame = +2
Query: 254 RDRYTRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMA 385
RD T + +G+ FV + R DAE A+D M+G L R +R A
Sbjct: 165 RDNNTNKGKGYGFVSYPRREDAERAIDEMNGAWLGRRTIRTNWA 208
>U28944-7|AAN63457.1| 295|Caenorhabditis elegans Hypothetical
protein C18A3.5f protein.
Length = 295
Score = 39.1 bits (87), Expect = 0.003
Identities = 17/44 (38%), Positives = 28/44 (63%)
Frame = +2
Query: 254 RDRYTRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMA 385
RD T +S+G+ FV + +R +AE A++ M+G+ L R +R A
Sbjct: 55 RDTNTTKSKGYGFVSYPKREEAERAIEQMNGQWLGRRTIRTNWA 98
>U28944-6|AAN63456.1| 305|Caenorhabditis elegans Hypothetical
protein C18A3.5e protein.
Length = 305
Score = 39.1 bits (87), Expect = 0.003
Identities = 17/44 (38%), Positives = 28/44 (63%)
Frame = +2
Query: 254 RDRYTRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMA 385
RD T +S+G+ FV + +R +AE A++ M+G+ L R +R A
Sbjct: 65 RDTNTTKSKGYGFVSYPKREEAERAIEQMNGQWLGRRTIRTNWA 108
>U28944-5|AAK68191.1| 408|Caenorhabditis elegans Hypothetical
protein C18A3.5a protein.
Length = 408
Score = 39.1 bits (87), Expect = 0.003
Identities = 17/44 (38%), Positives = 28/44 (63%)
Frame = +2
Query: 254 RDRYTRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMA 385
RD T +S+G+ FV + +R +AE A++ M+G+ L R +R A
Sbjct: 168 RDTNTTKSKGYGFVSYPKREEAERAIEQMNGQWLGRRTIRTNWA 211
Score = 32.7 bits (71), Expect = 0.26
Identities = 15/34 (44%), Positives = 22/34 (64%)
Frame = +2
Query: 284 FAFVRFFERRDAEEALDTMDGRMLDGRELRVQMA 385
+AFV F + A +AL TM+ R+L RE++V A
Sbjct: 86 YAFVEFSDHGQASQALQTMNKRLLLDREMKVNWA 119
>U28944-4|AAK68192.1| 376|Caenorhabditis elegans Hypothetical
protein C18A3.5b protein.
Length = 376
Score = 39.1 bits (87), Expect = 0.003
Identities = 17/44 (38%), Positives = 28/44 (63%)
Frame = +2
Query: 254 RDRYTRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMA 385
RD T +S+G+ FV + +R +AE A++ M+G+ L R +R A
Sbjct: 136 RDTNTTKSKGYGFVSYPKREEAERAIEQMNGQWLGRRTIRTNWA 179
>AL132904-14|CAC35847.2| 258|Caenorhabditis elegans Hypothetical
protein Y111B2A.18 protein.
Length = 258
Score = 39.1 bits (87), Expect = 0.003
Identities = 17/32 (53%), Positives = 22/32 (68%)
Frame = +2
Query: 284 FAFVRFFERRDAEEALDTMDGRMLDGRELRVQ 379
FAFV F + RDAE+A+ DG DGR +RV+
Sbjct: 48 FAFVEFEDHRDAEDAVRARDGYEFDGRRIRVE 79
>AF242767-1|AAG36874.1| 258|Caenorhabditis elegans SF2 protein.
Length = 258
Score = 39.1 bits (87), Expect = 0.003
Identities = 17/32 (53%), Positives = 22/32 (68%)
Frame = +2
Query: 284 FAFVRFFERRDAEEALDTMDGRMLDGRELRVQ 379
FAFV F + RDAE+A+ DG DGR +RV+
Sbjct: 48 FAFVEFEDHRDAEDAVRARDGYEFDGRRIRVE 79
>U28738-11|AAK68399.3| 166|Caenorhabditis elegans Sr protein
(splicing factor) protein5, isoform b protein.
Length = 166
Score = 37.9 bits (84), Expect = 0.007
Identities = 18/37 (48%), Positives = 26/37 (70%), Gaps = 2/37 (5%)
Frame = +2
Query: 281 GFAFVRFFERRDAEEALDTMDGRMLDGRELR--VQMA 385
GFAFV F + RDAE+A +DG+ ++G +R V+MA
Sbjct: 36 GFAFVDFEDSRDAEDACHDLDGKTMEGSSMRLVVEMA 72
>U28738-10|AAK72066.3| 208|Caenorhabditis elegans Sr protein
(splicing factor) protein5, isoform d protein.
Length = 208
Score = 37.9 bits (84), Expect = 0.007
Identities = 18/37 (48%), Positives = 26/37 (70%), Gaps = 2/37 (5%)
Frame = +2
Query: 281 GFAFVRFFERRDAEEALDTMDGRMLDGRELR--VQMA 385
GFAFV F + RDAE+A +DG+ ++G +R V+MA
Sbjct: 36 GFAFVDFEDSRDAEDACHDLDGKTMEGSSMRLVVEMA 72
>U28738-9|AAA68314.3| 208|Caenorhabditis elegans Sr protein
(splicing factor) protein5, isoform a protein.
Length = 208
Score = 37.9 bits (84), Expect = 0.007
Identities = 18/37 (48%), Positives = 26/37 (70%), Gaps = 2/37 (5%)
Frame = +2
Query: 281 GFAFVRFFERRDAEEALDTMDGRMLDGRELR--VQMA 385
GFAFV F + RDAE+A +DG+ ++G +R V+MA
Sbjct: 36 GFAFVDFEDSRDAEDACHDLDGKTMEGSSMRLVVEMA 72
>AL137227-1|CAB70238.2| 611|Caenorhabditis elegans Hypothetical
protein F58D5.1 protein.
Length = 611
Score = 37.9 bits (84), Expect = 0.007
Identities = 21/62 (33%), Positives = 31/62 (50%), Gaps = 1/62 (1%)
Frame = +2
Query: 203 LTPRFRKVRRSW*YLHSRDRYTRESRGFAFVRFFERRDAEEALDTMDGRMLD-GRELRVQ 379
L P F K + W D + SRG+AFV + + DA A T DG + G+ L+V
Sbjct: 216 LVPLFEKSGKIWDLRLMMDPMSGASRGYAFVTYCNKEDAAAAAKTYDGHEISTGKPLKVN 275
Query: 380 MA 385
++
Sbjct: 276 VS 277
Score = 29.9 bits (64), Expect = 1.9
Identities = 14/45 (31%), Positives = 27/45 (60%)
Frame = +2
Query: 251 SRDRYTRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMA 385
S DR ++ + +AF+ F ER D +A++ +G+ L+G + +A
Sbjct: 402 SLDR-VKKVKDYAFIHFNERDDCLKAMEEWNGKELEGTVVEASLA 445
>Z83127-4|CAB05631.1| 872|Caenorhabditis elegans Hypothetical
protein T23F6.4 protein.
Length = 872
Score = 37.5 bits (83), Expect = 0.009
Identities = 16/37 (43%), Positives = 24/37 (64%)
Frame = +2
Query: 275 SRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMA 385
S GF FV+F+ DA+ AL M G +LDG L ++++
Sbjct: 688 SMGFGFVQFYTAFDAKTALKDMQGELLDGHSLELKIS 724
Score = 29.1 bits (62), Expect = 3.2
Identities = 15/42 (35%), Positives = 23/42 (54%), Gaps = 2/42 (4%)
Frame = +2
Query: 260 RYTRES--RGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQ 379
+YT+E RGFAFV F + A AL + + ++L V+
Sbjct: 35 KYTKEGKFRGFAFVGFLDEGSASNALAKSNQTFFNSKKLTVE 76
Score = 27.5 bits (58), Expect = 9.9
Identities = 10/26 (38%), Positives = 18/26 (69%)
Frame = +3
Query: 174 NLTYRTTPEDLRRVFERCGEVGDIYI 251
NL Y T +DL+ +F++ GEV ++ +
Sbjct: 285 NLPYATKEDDLQFLFKKYGEVSEVQV 310
>U41007-10|AAL32214.1| 118|Caenorhabditis elegans Sr protein
(splicing factor) protein6, isoform c protein.
Length = 118
Score = 37.5 bits (83), Expect = 0.009
Identities = 20/58 (34%), Positives = 32/58 (55%)
Frame = +2
Query: 212 RFRKVRRSW*YLHSRDRYTRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMA 385
RF ++R+ W R GFAFV + + RDAE+A+ +DG + G RV+++
Sbjct: 25 RFGRIRKVW--------VARRPPGFAFVEYDDVRDAEDAVRALDGSRICGVRARVELS 74
>U41007-9|AAL32213.1| 153|Caenorhabditis elegans Sr protein
(splicing factor) protein6, isoform b protein.
Length = 153
Score = 37.5 bits (83), Expect = 0.009
Identities = 20/58 (34%), Positives = 32/58 (55%)
Frame = +2
Query: 212 RFRKVRRSW*YLHSRDRYTRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMA 385
RF ++R+ W R GFAFV + + RDAE+A+ +DG + G RV+++
Sbjct: 25 RFGRIRKVW--------VARRPPGFAFVEYDDVRDAEDAVRALDGSRICGVRARVELS 74
>U41007-8|AAA82270.1| 179|Caenorhabditis elegans Sr protein
(splicing factor) protein6, isoform a protein.
Length = 179
Score = 37.5 bits (83), Expect = 0.009
Identities = 20/58 (34%), Positives = 32/58 (55%)
Frame = +2
Query: 212 RFRKVRRSW*YLHSRDRYTRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMA 385
RF ++R+ W R GFAFV + + RDAE+A+ +DG + G RV+++
Sbjct: 25 RFGRIRKVW--------VARRPPGFAFVEYDDVRDAEDAVRALDGSRICGVRARVELS 74
>Z78536-3|CAB01717.2| 360|Caenorhabditis elegans Hypothetical
protein C07A4.1 protein.
Length = 360
Score = 36.3 bits (80), Expect = 0.021
Identities = 16/44 (36%), Positives = 28/44 (63%)
Frame = +2
Query: 254 RDRYTRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMA 385
RD T++S+G+ FV F +++AE A+ M+G+ + R +R A
Sbjct: 168 RDVQTQKSKGYGFVSFPNKQNAENAIAGMNGKWIGKRAVRTNWA 211
>Z78419-2|CAB01702.1| 154|Caenorhabditis elegans Hypothetical
protein F26A3.2 protein.
Length = 154
Score = 35.5 bits (78), Expect = 0.037
Identities = 15/39 (38%), Positives = 22/39 (56%)
Frame = +2
Query: 257 DRYTRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELR 373
DR+ + GF FV ++ R DAE AL + +D R +R
Sbjct: 71 DRFKKTPCGFCFVEYYTREDAELALQNISNTRMDDRVIR 109
>U41531-7|AAA83161.2| 415|Caenorhabditis elegans Feminizing gene on
x protein 1 protein.
Length = 415
Score = 35.5 bits (78), Expect = 0.037
Identities = 16/39 (41%), Positives = 23/39 (58%)
Frame = +2
Query: 269 RESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMA 385
R S+GF FV +DAE A + G M++GR++ V A
Sbjct: 189 RGSKGFGFVTMERPQDAERARQELHGSMIEGRKIEVNCA 227
Score = 31.1 bits (67), Expect = 0.80
Identities = 17/44 (38%), Positives = 25/44 (56%), Gaps = 2/44 (4%)
Frame = +3
Query: 147 DGMVSLKVDNLTYRTTPEDLRRVFERCGEVGDIYI--PEIGTQG 272
DG L V N+ +R DL+ +FE+ G V D+ I E G++G
Sbjct: 150 DGPKRLHVSNIPFRFRDPDLKTMFEKFGVVSDVEIIFNERGSKG 193
>U14946-1|AAA67723.1| 415|Caenorhabditis elegans ribonucleoprotein
protein.
Length = 415
Score = 35.5 bits (78), Expect = 0.037
Identities = 16/39 (41%), Positives = 23/39 (58%)
Frame = +2
Query: 269 RESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMA 385
R S+GF FV +DAE A + G M++GR++ V A
Sbjct: 189 RGSKGFGFVTMERPQDAERARQELHGSMIEGRKIEVNCA 227
Score = 31.1 bits (67), Expect = 0.80
Identities = 17/44 (38%), Positives = 25/44 (56%), Gaps = 2/44 (4%)
Frame = +3
Query: 147 DGMVSLKVDNLTYRTTPEDLRRVFERCGEVGDIYI--PEIGTQG 272
DG L V N+ +R DL+ +FE+ G V D+ I E G++G
Sbjct: 150 DGPKRLHVSNIPFRFRDPDLKTMFEKFGVVSDVEIIFNERGSKG 193
>U80455-1|AAB37881.1| 584|Caenorhabditis elegans Elav-type rna
binding protein familyprotein 1, isoform a protein.
Length = 584
Score = 34.3 bits (75), Expect = 0.086
Identities = 17/44 (38%), Positives = 27/44 (61%), Gaps = 1/44 (2%)
Frame = +2
Query: 254 RDRYTRESRGFAFVRFFERRDAEEALDTMDG-RMLDGRELRVQM 382
RD+ T+ S+G FV F+ R+DA EA + ++++G VQM
Sbjct: 88 RDKSTQASKGCCFVTFYHRKDAIEAQGALHNIKVIEGMHHPVQM 131
Score = 30.3 bits (65), Expect = 1.4
Identities = 13/42 (30%), Positives = 23/42 (54%)
Frame = +2
Query: 257 DRYTRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQM 382
D+ T S+ F FV + + A A+ M+G + + L+VQ+
Sbjct: 533 DKVTNLSKCFGFVSYENAQSATNAISAMNGFQIGSKRLKVQL 574
>U53931-1|AAA98566.1| 584|Caenorhabditis elegans elav-type
ribonucleoprotein protein.
Length = 584
Score = 34.3 bits (75), Expect = 0.086
Identities = 17/44 (38%), Positives = 27/44 (61%), Gaps = 1/44 (2%)
Frame = +2
Query: 254 RDRYTRESRGFAFVRFFERRDAEEALDTMDG-RMLDGRELRVQM 382
RD+ T+ S+G FV F+ R+DA EA + ++++G VQM
Sbjct: 88 RDKSTQASKGCCFVTFYHRKDAIEAQGALHNIKVIEGMHHPVQM 131
Score = 30.3 bits (65), Expect = 1.4
Identities = 13/42 (30%), Positives = 23/42 (54%)
Frame = +2
Query: 257 DRYTRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQM 382
D+ T S+ F FV + + A A+ M+G + + L+VQ+
Sbjct: 533 DKVTNLSKCFGFVSYENAQSATNAISAMNGFQIGSKRLKVQL 574
>EF523770-1|ABS18836.1| 513|Caenorhabditis elegans ELAV-type RNA
binding protein variantE protein.
Length = 513
Score = 34.3 bits (75), Expect = 0.086
Identities = 17/44 (38%), Positives = 27/44 (61%), Gaps = 1/44 (2%)
Frame = +2
Query: 254 RDRYTRESRGFAFVRFFERRDAEEALDTMDG-RMLDGRELRVQM 382
RD+ T+ S+G FV F+ R+DA EA + ++++G VQM
Sbjct: 88 RDKSTQASKGCCFVTFYHRKDAIEAQGALHNIKVIEGMHHPVQM 131
Score = 30.3 bits (65), Expect = 1.4
Identities = 13/42 (30%), Positives = 23/42 (54%)
Frame = +2
Query: 257 DRYTRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQM 382
D+ T S+ F FV + + A A+ M+G + + L+VQ+
Sbjct: 462 DKVTNLSKCFGFVSYENAQSATNAISAMNGFQIGSKRLKVQL 503
>EF523769-1|ABS18835.1| 327|Caenorhabditis elegans ELAV-type RNA
binding protein variantD protein.
Length = 327
Score = 34.3 bits (75), Expect = 0.086
Identities = 17/44 (38%), Positives = 27/44 (61%), Gaps = 1/44 (2%)
Frame = +2
Query: 254 RDRYTRESRGFAFVRFFERRDAEEALDTMDG-RMLDGRELRVQM 382
RD+ T+ S+G FV F+ R+DA EA + ++++G VQM
Sbjct: 88 RDKSTQASKGCCFVTFYHRKDAIEAQGALHNIKVIEGMHHPVQM 131
>EF523768-1|ABS18834.1| 378|Caenorhabditis elegans ELAV-type RNA
binding protein variantC protein.
Length = 378
Score = 34.3 bits (75), Expect = 0.086
Identities = 17/44 (38%), Positives = 27/44 (61%), Gaps = 1/44 (2%)
Frame = +2
Query: 254 RDRYTRESRGFAFVRFFERRDAEEALDTMDG-RMLDGRELRVQM 382
RD+ T+ S+G FV F+ R+DA EA + ++++G VQM
Sbjct: 88 RDKSTQASKGCCFVTFYHRKDAIEAQGALHNIKVIEGMHHPVQM 131
>EF523767-1|ABS18833.1| 193|Caenorhabditis elegans ELAV-type RNA
binding protein variantB protein.
Length = 193
Score = 34.3 bits (75), Expect = 0.086
Identities = 17/44 (38%), Positives = 27/44 (61%), Gaps = 1/44 (2%)
Frame = +2
Query: 254 RDRYTRESRGFAFVRFFERRDAEEALDTMDG-RMLDGRELRVQM 382
RD+ T+ S+G FV F+ R+DA EA + ++++G VQM
Sbjct: 88 RDKSTQASKGCCFVTFYHRKDAIEAQGALHNIKVIEGMHHPVQM 131
>EF523766-1|ABS18832.1| 584|Caenorhabditis elegans ELAV-type RNA
binding protein variantA protein.
Length = 584
Score = 34.3 bits (75), Expect = 0.086
Identities = 17/44 (38%), Positives = 27/44 (61%), Gaps = 1/44 (2%)
Frame = +2
Query: 254 RDRYTRESRGFAFVRFFERRDAEEALDTMDG-RMLDGRELRVQM 382
RD+ T+ S+G FV F+ R+DA EA + ++++G VQM
Sbjct: 88 RDKSTQASKGCCFVTFYHRKDAIEAQGALHNIKVIEGMHHPVQM 131
Score = 30.3 bits (65), Expect = 1.4
Identities = 13/42 (30%), Positives = 23/42 (54%)
Frame = +2
Query: 257 DRYTRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQM 382
D+ T S+ F FV + + A A+ M+G + + L+VQ+
Sbjct: 533 DKVTNLSKCFGFVSYENAQSATNAISAMNGFQIGSKRLKVQL 574
>U00052-10|AAK21429.2| 289|Caenorhabditis elegans Rnp (rrm rna
binding domain) containingprotein 5 protein.
Length = 289
Score = 33.9 bits (74), Expect = 0.11
Identities = 13/35 (37%), Positives = 22/35 (62%)
Frame = +2
Query: 278 RGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQM 382
RG+ +V + DAE+++ MDG +DG + V+M
Sbjct: 175 RGYGYVEYDNLEDAEKSIKHMDGGQIDGMAVHVEM 209
>Z66521-4|CAD59160.1| 150|Caenorhabditis elegans Hypothetical
protein W02B12.3c protein.
Length = 150
Score = 33.5 bits (73), Expect = 0.15
Identities = 13/30 (43%), Positives = 21/30 (70%)
Frame = +2
Query: 281 GFAFVRFFERRDAEEALDTMDGRMLDGREL 370
GF FV F ++RDAE+A+ ++G+ L G +
Sbjct: 37 GFGFVEFDDKRDAEDAVHDLNGKELGGERV 66
>Z66521-3|CAD59159.1| 148|Caenorhabditis elegans Hypothetical
protein W02B12.3b protein.
Length = 148
Score = 33.5 bits (73), Expect = 0.15
Identities = 13/30 (43%), Positives = 21/30 (70%)
Frame = +2
Query: 281 GFAFVRFFERRDAEEALDTMDGRMLDGREL 370
GF FV F ++RDAE+A+ ++G+ L G +
Sbjct: 37 GFGFVEFDDKRDAEDAVHDLNGKELGGERV 66
>Z66521-2|CAA91395.1| 312|Caenorhabditis elegans Hypothetical
protein W02B12.3a protein.
Length = 312
Score = 33.5 bits (73), Expect = 0.15
Identities = 13/30 (43%), Positives = 21/30 (70%)
Frame = +2
Query: 281 GFAFVRFFERRDAEEALDTMDGRMLDGREL 370
GF FV F ++RDAE+A+ ++G+ L G +
Sbjct: 37 GFGFVEFDDKRDAEDAVHDLNGKELGGERV 66
>Z81037-3|CAB02750.1| 205|Caenorhabditis elegans Hypothetical
protein C17E4.5 protein.
Length = 205
Score = 33.1 bits (72), Expect = 0.20
Identities = 15/40 (37%), Positives = 25/40 (62%)
Frame = +2
Query: 257 DRYTRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRV 376
DR++ +GFA+V F E+ + AL M +L GR+++V
Sbjct: 112 DRFSGHPKGFAYVEFTEKEGMQNAL-AMTDSLLRGRQIKV 150
>Z97628-2|CAB10726.2| 427|Caenorhabditis elegans Hypothetical
protein F39H2.2a protein.
Length = 427
Score = 32.7 bits (71), Expect = 0.26
Identities = 14/44 (31%), Positives = 24/44 (54%)
Frame = +2
Query: 254 RDRYTRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMA 385
RDR + +S +AF+ F + E+A MD ++D R + V +
Sbjct: 274 RDRRSGDSLQYAFIEFDNAKSCEQAFFKMDNVLIDDRRIHVDFS 317
>Z92826-4|CAB07322.1| 309|Caenorhabditis elegans Hypothetical
protein C18D11.4 protein.
Length = 309
Score = 32.7 bits (71), Expect = 0.26
Identities = 17/43 (39%), Positives = 23/43 (53%)
Frame = +2
Query: 257 DRYTRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMA 385
DR + SRGF F+ F DA A D + LDG ++RV +
Sbjct: 110 DRPSGNSRGFGFIYFNLIEDATAARDKLCNTDLDGHKIRVDFS 152
>Z81080-5|CAB03088.2| 427|Caenorhabditis elegans Hypothetical
protein F39H2.2a protein.
Length = 427
Score = 32.7 bits (71), Expect = 0.26
Identities = 14/44 (31%), Positives = 24/44 (54%)
Frame = +2
Query: 254 RDRYTRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMA 385
RDR + +S +AF+ F + E+A MD ++D R + V +
Sbjct: 274 RDRRSGDSLQYAFIEFDNAKSCEQAFFKMDNVLIDDRRIHVDFS 317
>Z81080-2|CAD56584.1| 358|Caenorhabditis elegans Hypothetical
protein F39H2.2b protein.
Length = 358
Score = 32.7 bits (71), Expect = 0.26
Identities = 14/44 (31%), Positives = 24/44 (54%)
Frame = +2
Query: 254 RDRYTRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMA 385
RDR + +S +AF+ F + E+A MD ++D R + V +
Sbjct: 205 RDRRSGDSLQYAFIEFDNAKSCEQAFFKMDNVLIDDRRIHVDFS 248
>Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical
protein C08B11.5 protein.
Length = 388
Score = 32.7 bits (71), Expect = 0.26
Identities = 15/44 (34%), Positives = 24/44 (54%)
Frame = +2
Query: 254 RDRYTRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMA 385
+DR T +GF FV F DA+ A+ ++ L G+ ++V A
Sbjct: 46 KDRVTANHQGFGFVEFMGEEDADYAIKILNMIKLYGKPIKVNKA 89
Score = 32.7 bits (71), Expect = 0.26
Identities = 16/44 (36%), Positives = 25/44 (56%)
Frame = +2
Query: 254 RDRYTRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMA 385
RD + S+GFAF+ F ++ AL+ M+G+ L R + V A
Sbjct: 134 RDVDSGTSKGFAFINFASFEASDTALEAMNGQFLCNRAITVSYA 177
>U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA
binding protein protein.
Length = 398
Score = 32.7 bits (71), Expect = 0.26
Identities = 15/44 (34%), Positives = 24/44 (54%)
Frame = +2
Query: 254 RDRYTRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMA 385
+DR T +GF FV F DA+ A+ ++ L G+ ++V A
Sbjct: 56 KDRVTANHQGFGFVEFMGEEDADYAIKILNMIKLYGKPIKVNKA 99
Score = 32.7 bits (71), Expect = 0.26
Identities = 16/44 (36%), Positives = 25/44 (56%)
Frame = +2
Query: 254 RDRYTRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMA 385
RD + S+GFAF+ F ++ AL+ M+G+ L R + V A
Sbjct: 144 RDVDSGTSKGFAFINFASFEASDTALEAMNGQFLCNRAITVSYA 187
>U23450-2|AAK31468.1| 302|Caenorhabditis elegans Hypothetical
protein C30B5.4 protein.
Length = 302
Score = 32.7 bits (71), Expect = 0.26
Identities = 16/41 (39%), Positives = 26/41 (63%)
Frame = +2
Query: 254 RDRYTRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRV 376
RD+ T +S+GFAF+ + ++R A+D +G L R +RV
Sbjct: 71 RDKDTGKSKGFAFLCYKDQRSTILAVDNFNGISLHKRMIRV 111
>AL117204-22|CAB55151.1| 331|Caenorhabditis elegans Hypothetical
protein Y116A8C.34 protein.
Length = 331
Score = 32.7 bits (71), Expect = 0.26
Identities = 17/43 (39%), Positives = 23/43 (53%)
Frame = +2
Query: 257 DRYTRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMA 385
D + + RGF FV F DA A+D M+ L G+ +RV A
Sbjct: 45 DYESGKHRGFGFVEFDMAEDAAMAIDNMNESELFGKTIRVNFA 87
>AC024818-2|AAF60781.1| 302|Caenorhabditis elegans Temporarily
assigned gene nameprotein 262 protein.
Length = 302
Score = 32.7 bits (71), Expect = 0.26
Identities = 13/42 (30%), Positives = 25/42 (59%)
Frame = +2
Query: 254 RDRYTRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQ 379
R+ T +S+G+ FV F + D A+ MDG+ + R ++++
Sbjct: 236 RESRTNKSKGYGFVSFRDSEDYVRAMREMDGKYVGNRPIKLR 277
>Z66521-8|CAA91394.1| 281|Caenorhabditis elegans Hypothetical
protein W02B12.2 protein.
Length = 281
Score = 30.3 bits (65), Expect = 1.4
Identities = 12/30 (40%), Positives = 21/30 (70%)
Frame = +2
Query: 281 GFAFVRFFERRDAEEALDTMDGRMLDGREL 370
GF FV F ++RDA++A+ ++G+ L G +
Sbjct: 36 GFGFVDFQDQRDADDAVHDLNGKELCGERV 65
>Z36238-4|CAD82915.1| 286|Caenorhabditis elegans Hypothetical
protein R74.5b protein.
Length = 286
Score = 30.3 bits (65), Expect = 1.4
Identities = 14/39 (35%), Positives = 21/39 (53%)
Frame = +2
Query: 269 RESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMA 385
R S+GF FV DA+ A +G ++GR + V +A
Sbjct: 18 RGSKGFGFVTMQNPDDADRARAEFNGTTIEGRRVEVNLA 56
>Z36238-3|CAA85276.1| 404|Caenorhabditis elegans Hypothetical
protein R74.5a protein.
Length = 404
Score = 30.3 bits (65), Expect = 1.4
Identities = 14/39 (35%), Positives = 21/39 (53%)
Frame = +2
Query: 269 RESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMA 385
R S+GF FV DA+ A +G ++GR + V +A
Sbjct: 136 RGSKGFGFVTMQNPDDADRARAEFNGTTIEGRRVEVNLA 174
>U80455-2|AAB37882.2| 420|Caenorhabditis elegans Elav-type rna
binding protein familyprotein 1, isoform b protein.
Length = 420
Score = 30.3 bits (65), Expect = 1.4
Identities = 13/42 (30%), Positives = 23/42 (54%)
Frame = +2
Query: 257 DRYTRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQM 382
D+ T S+ F FV + + A A+ M+G + + L+VQ+
Sbjct: 369 DKVTNLSKCFGFVSYENAQSATNAISAMNGFQIGSKRLKVQL 410
>DQ485531-1|ABF22491.1| 404|Caenorhabditis elegans RNA-binding
protein ASD-1 protein.
Length = 404
Score = 30.3 bits (65), Expect = 1.4
Identities = 14/39 (35%), Positives = 21/39 (53%)
Frame = +2
Query: 269 RESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMA 385
R S+GF FV DA+ A +G ++GR + V +A
Sbjct: 136 RGSKGFGFVTMQNPDDADRARAEFNGTTIEGRRVEVNLA 174
>Z81473-3|CAB03896.4| 514|Caenorhabditis elegans Hypothetical
protein C17D12.2 protein.
Length = 514
Score = 29.9 bits (64), Expect = 1.9
Identities = 13/42 (30%), Positives = 24/42 (57%)
Frame = +2
Query: 257 DRYTRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQM 382
DR T +S+ F FV + ++ A+ M+G + + L+VQ+
Sbjct: 463 DRATNQSKCFGFVSYDNIHSSQAAITAMNGFQIGMKRLKVQL 504
>AY342388-1|AAQ19851.1| 514|Caenorhabditis elegans putative
RNA-binding protein protein.
Length = 514
Score = 29.9 bits (64), Expect = 1.9
Identities = 13/42 (30%), Positives = 24/42 (57%)
Frame = +2
Query: 257 DRYTRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQM 382
DR T +S+ F FV + ++ A+ M+G + + L+VQ+
Sbjct: 463 DRATNQSKCFGFVSYDNIHSSQAAITAMNGFQIGMKRLKVQL 504
>AC024791-23|AAM81102.1| 346|Caenorhabditis elegans Rnp (rrm rna
binding domain) containingprotein 6, isoform c protein.
Length = 346
Score = 29.9 bits (64), Expect = 1.9
Identities = 17/42 (40%), Positives = 24/42 (57%)
Frame = +2
Query: 251 SRDRYTRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRV 376
S D T + FAFV + A A ++M+G+ML GR L+V
Sbjct: 134 SWDPATGHHKTFAFVEYEVPEAALLAQESMNGQMLGGRNLKV 175
>AC024791-22|AAF60676.1| 339|Caenorhabditis elegans Rnp (rrm rna
binding domain) containingprotein 6, isoform a protein.
Length = 339
Score = 29.9 bits (64), Expect = 1.9
Identities = 17/42 (40%), Positives = 24/42 (57%)
Frame = +2
Query: 251 SRDRYTRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRV 376
S D T + FAFV + A A ++M+G+ML GR L+V
Sbjct: 134 SWDPATGHHKTFAFVEYEVPEAALLAQESMNGQMLGGRNLKV 175
>AC024791-21|AAF60666.1| 749|Caenorhabditis elegans Rnp (rrm rna
binding domain) containingprotein 6, isoform b protein.
Length = 749
Score = 29.9 bits (64), Expect = 1.9
Identities = 17/42 (40%), Positives = 24/42 (57%)
Frame = +2
Query: 251 SRDRYTRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRV 376
S D T + FAFV + A A ++M+G+ML GR L+V
Sbjct: 134 SWDPATGHHKTFAFVEYEVPEAALLAQESMNGQMLGGRNLKV 175
>Z50044-2|CAA90354.1| 256|Caenorhabditis elegans Hypothetical
protein F22B5.2 protein.
Length = 256
Score = 29.5 bits (63), Expect = 2.4
Identities = 18/55 (32%), Positives = 28/55 (50%)
Frame = +2
Query: 215 FRKVRRSW*YLHSRDRYTRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQ 379
F K+ R +RD+ T +GFAFV F R DA A+ ++ + L+V+
Sbjct: 196 FGKIGRVIRIFIARDKVTGLPKGFAFVTFESRDDAARAIAELNDIRMYHMVLKVE 250
>Z36752-6|CAA85327.1| 456|Caenorhabditis elegans Hypothetical
protein F35H8.5 protein.
Length = 456
Score = 29.5 bits (63), Expect = 2.4
Identities = 13/35 (37%), Positives = 22/35 (62%)
Frame = +2
Query: 257 DRYTRESRGFAFVRFFERRDAEEALDTMDGRMLDG 361
D T S+G FVRF ++ +A+ A+ T++G + G
Sbjct: 162 DNVTGLSKGVGFVRFDKKDEADVAIKTLNGSIPSG 196
>Z35601-1|CAA84667.2| 320|Caenorhabditis elegans Hypothetical
protein R10E9.1 protein.
Length = 320
Score = 29.5 bits (63), Expect = 2.4
Identities = 13/44 (29%), Positives = 26/44 (59%)
Frame = +2
Query: 254 RDRYTRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMA 385
RD T+ +RGF F+ F + ++ L+ + LDG+++ ++A
Sbjct: 78 RDPATKRARGFGFITFVDPSSVDKVLNNRE-HELDGKKIDPKVA 120
>AB036738-1|BAB13470.1| 320|Caenorhabditis elegans neural
RNA-binding protein MSI-1 protein.
Length = 320
Score = 29.5 bits (63), Expect = 2.4
Identities = 13/44 (29%), Positives = 26/44 (59%)
Frame = +2
Query: 254 RDRYTRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMA 385
RD T+ +RGF F+ F + ++ L+ + LDG+++ ++A
Sbjct: 78 RDPATKRARGFGFITFVDPSSVDKVLNNRE-HELDGKKIDPKVA 120
>AL032631-3|CAE54916.1| 583|Caenorhabditis elegans Hypothetical
protein Y106G6H.2b protein.
Length = 583
Score = 29.1 bits (62), Expect = 3.2
Identities = 11/37 (29%), Positives = 22/37 (59%)
Frame = +2
Query: 272 ESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQM 382
+S+GF FV F +AE A+ + ++G +L++ +
Sbjct: 187 KSKGFGFVAFANPEEAETAVQALHDSTIEGTDLKLHV 223
>AC024826-10|AAM97977.1| 435|Caenorhabditis elegans Hypothetical
protein Y55F3AM.3c protein.
Length = 435
Score = 29.1 bits (62), Expect = 3.2
Identities = 13/38 (34%), Positives = 24/38 (63%)
Frame = +2
Query: 269 RESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQM 382
RE+RGFA + F DA+++ + ++ L GR +R+ +
Sbjct: 164 RENRGFATITFRNADDAQKSCEQLNNFELAGRCIRLSI 201
>AC024826-8|AAF60795.2| 580|Caenorhabditis elegans Hypothetical
protein Y55F3AM.3a protein.
Length = 580
Score = 29.1 bits (62), Expect = 3.2
Identities = 13/38 (34%), Positives = 24/38 (63%)
Frame = +2
Query: 269 RESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQM 382
RE+RGFA + F DA+++ + ++ L GR +R+ +
Sbjct: 309 RENRGFATITFRNADDAQKSCEQLNNFELAGRCIRLSI 346
>AC006696-7|AAF39988.1| 140|Caenorhabditis elegans Hypothetical
protein W08E12.3 protein.
Length = 140
Score = 29.1 bits (62), Expect = 3.2
Identities = 19/56 (33%), Positives = 24/56 (42%), Gaps = 2/56 (3%)
Frame = -1
Query: 497 GNGCGYDCASNYDGGNET*TCACDRND--SCMAMRGDHIAPSEREVPCRPTFVRPS 336
GN CG C N G T + N+ SC G AP P +P F++PS
Sbjct: 47 GNNCG--CNGNNCGPQVTVVQVPNNNNGCSCSPCNGPVCAPMCNSCPPQPIFIQPS 100
>AC006696-6|AAF39986.1| 141|Caenorhabditis elegans Hypothetical
protein W08E12.4 protein.
Length = 141
Score = 29.1 bits (62), Expect = 3.2
Identities = 19/56 (33%), Positives = 24/56 (42%), Gaps = 2/56 (3%)
Frame = -1
Query: 497 GNGCGYDCASNYDGGNET*TCACDRND--SCMAMRGDHIAPSEREVPCRPTFVRPS 336
GN CG C N G T + N+ SC G AP P +P F++PS
Sbjct: 47 GNNCG--CNGNNCGPQVTVVQVPNNNNGCSCSPCNGPICAPMCNSCPPQPIFIQPS 100
>AC006696-5|AAF39987.1| 141|Caenorhabditis elegans Hypothetical
protein W08E12.5 protein.
Length = 141
Score = 29.1 bits (62), Expect = 3.2
Identities = 19/56 (33%), Positives = 24/56 (42%), Gaps = 2/56 (3%)
Frame = -1
Query: 497 GNGCGYDCASNYDGGNET*TCACDRND--SCMAMRGDHIAPSEREVPCRPTFVRPS 336
GN CG C N G T + N+ SC G AP P +P F++PS
Sbjct: 47 GNNCG--CNGNNCGPQVTVVQVPNNNNGCSCSPCNGPICAPMCNSCPPQPIFIQPS 100
>Z68297-5|CAC70081.1| 394|Caenorhabditis elegans Hypothetical
protein F11A10.7 protein.
Length = 394
Score = 28.7 bits (61), Expect = 4.3
Identities = 15/41 (36%), Positives = 25/41 (60%)
Frame = +2
Query: 254 RDRYTRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRV 376
RD+ T + +GFAFV F + AL +M+ ++ R+LR+
Sbjct: 280 RDKDTGKGKGFAFVNFKQDSSVSLAL-SMETIKMEKRDLRI 319
>Z82262-2|CAB05152.1| 248|Caenorhabditis elegans Hypothetical
protein C43F9.5 protein.
Length = 248
Score = 28.3 bits (60), Expect = 5.7
Identities = 14/28 (50%), Positives = 14/28 (50%), Gaps = 2/28 (7%)
Frame = -1
Query: 500 CGNGC--GYDCASNYDGGNET*TCACDR 423
C NGC GY C SN G TCA R
Sbjct: 197 CSNGCPTGYSCNSNTGNGYCCATCASGR 224
>Z82057-4|CAB61024.2| 370|Caenorhabditis elegans Hypothetical
protein T10H4.12 protein.
Length = 370
Score = 28.3 bits (60), Expect = 5.7
Identities = 12/39 (30%), Positives = 19/39 (48%), Gaps = 3/39 (7%)
Frame = -1
Query: 569 IVSENDCVSG---KRPLELFESEQSDCGNGCGYDCASNY 462
++S+ C+ ++P+ E S CG CGY C Y
Sbjct: 128 VISDRVCIQSNGTQQPVISVEDILSCCGTTCGYGCKGGY 166
>Z81119-10|CAB61032.2| 370|Caenorhabditis elegans Hypothetical
protein T10H4.12 protein.
Length = 370
Score = 28.3 bits (60), Expect = 5.7
Identities = 12/39 (30%), Positives = 19/39 (48%), Gaps = 3/39 (7%)
Frame = -1
Query: 569 IVSENDCVSG---KRPLELFESEQSDCGNGCGYDCASNY 462
++S+ C+ ++P+ E S CG CGY C Y
Sbjct: 128 VISDRVCIQSNGTQQPVISVEDILSCCGTTCGYGCKGGY 166
>L39925-1|AAA98782.1| 370|Caenorhabditis elegans cathepsin B-like
cysteine proteinaseprotein.
Length = 370
Score = 28.3 bits (60), Expect = 5.7
Identities = 12/39 (30%), Positives = 19/39 (48%), Gaps = 3/39 (7%)
Frame = -1
Query: 569 IVSENDCVSG---KRPLELFESEQSDCGNGCGYDCASNY 462
++S+ C+ ++P+ E S CG CGY C Y
Sbjct: 128 VISDRVCIQSNGTQQPVISVEDILSCCGTTCGYGCKGGY 166
>L39890-1|AAA98788.1| 370|Caenorhabditis elegans cathepsin B-like
cysteine proteinaseprotein.
Length = 370
Score = 28.3 bits (60), Expect = 5.7
Identities = 12/39 (30%), Positives = 19/39 (48%), Gaps = 3/39 (7%)
Frame = -1
Query: 569 IVSENDCVSG---KRPLELFESEQSDCGNGCGYDCASNY 462
++S+ C+ ++P+ E S CG CGY C Y
Sbjct: 128 VISDRVCIQSNGTQQPVISVEDILSCCGTTCGYGCKGGY 166
>Z32683-11|CAA83626.1| 142|Caenorhabditis elegans Hypothetical
protein R07E5.14 protein.
Length = 142
Score = 27.9 bits (59), Expect = 7.5
Identities = 13/40 (32%), Positives = 24/40 (60%)
Frame = +2
Query: 257 DRYTRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRV 376
DR T +G+A V + +++A EA+D + L G+ ++V
Sbjct: 89 DRRTGFLKGYALVEYETQKEANEAIDQSNDTDLLGQNVKV 128
>U79157-1|AAC26982.1| 496|Caenorhabditis elegans splicing factor
U2AF65 protein.
Length = 496
Score = 27.9 bits (59), Expect = 7.5
Identities = 11/37 (29%), Positives = 23/37 (62%)
Frame = +2
Query: 275 SRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMA 385
S+G+AF + + ++A+ ++G L ++L VQ+A
Sbjct: 330 SKGYAFAEYLDPTLTDQAIAGLNGMQLGDKQLVVQLA 366
>U67947-1|AAB07557.2| 1147|Caenorhabditis elegans Hypothetical
protein H03E18.1 protein.
Length = 1147
Score = 27.9 bits (59), Expect = 7.5
Identities = 15/47 (31%), Positives = 21/47 (44%), Gaps = 2/47 (4%)
Frame = -1
Query: 521 FESEQSDCGNGCGYDCASNYDGGNET*TCAC--DRNDSCMAMRGDHI 387
FE D N C CA+ Y N+ C RN +C +G+H+
Sbjct: 256 FEEHDVDSVNDCRCLCAATYLPNNKKNKCMSFQFRNKTCTLNKGNHL 302
>U21320-5|AAA62536.2| 332|Caenorhabditis elegans Rnp (rrm rna
binding domain) containingprotein 7 protein.
Length = 332
Score = 27.9 bits (59), Expect = 7.5
Identities = 11/33 (33%), Positives = 19/33 (57%)
Frame = +2
Query: 278 RGFAFVRFFERRDAEEALDTMDGRMLDGRELRV 376
RG+AF+ + ++ + A DG +DG+ L V
Sbjct: 144 RGYAFIEYSDKAEMHTAYKKADGIKVDGKRLVV 176
>U21310-3|AAA62522.2| 1288|Caenorhabditis elegans Hypothetical protein
F40H6.5 protein.
Length = 1288
Score = 27.9 bits (59), Expect = 7.5
Identities = 11/27 (40%), Positives = 18/27 (66%)
Frame = +3
Query: 99 ISILFKMSYGRPPPRIDGMVSLKVDNL 179
I ++F ++ G PPP IDG + + +D L
Sbjct: 1238 IYMMFNVNQGGPPPVIDGYLEITLDCL 1264
>AF047651-3|AAZ82848.1| 515|Caenorhabditis elegans Hypothetical
protein C05D2.6b protein.
Length = 515
Score = 27.9 bits (59), Expect = 7.5
Identities = 23/84 (27%), Positives = 34/84 (40%), Gaps = 2/84 (2%)
Frame = +3
Query: 102 SILFKMSYGRPPPRIDGMVSLKVDNLTYRTTP--EDLRRVFERCGEVGDIYIPEIGTQGK 275
S++FK Y RPP ++ M S +D Y P ED+ + G + + Q
Sbjct: 134 SLIFKKKYSRPPSQLTAM-SSGLDKDFYNDVPLAEDVLEPGQSLGNSESMKFDYVVIQPH 192
Query: 276 VEDSPS*GFSSVVMLKKPWTRWTD 347
V SS K P +R T+
Sbjct: 193 VRPHQQIPTSSYSRRKSPQSRETE 216
>AC024875-3|AAK29989.1| 496|Caenorhabditis elegans U2af splicing
factor protein 1,isoform a protein.
Length = 496
Score = 27.9 bits (59), Expect = 7.5
Identities = 11/37 (29%), Positives = 23/37 (62%)
Frame = +2
Query: 275 SRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMA 385
S+G+AF + + ++A+ ++G L ++L VQ+A
Sbjct: 330 SKGYAFAEYLDPTLTDQAIAGLNGMQLGDKQLVVQLA 366
>AC024875-2|AAM44400.1| 471|Caenorhabditis elegans U2af splicing
factor protein 1,isoform d protein.
Length = 471
Score = 27.9 bits (59), Expect = 7.5
Identities = 11/37 (29%), Positives = 23/37 (62%)
Frame = +2
Query: 275 SRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMA 385
S+G+AF + + ++A+ ++G L ++L VQ+A
Sbjct: 305 SKGYAFAEYLDPTLTDQAIAGLNGMQLGDKQLVVQLA 341
>AC024875-1|AAL00879.1| 474|Caenorhabditis elegans U2af splicing
factor protein 1,isoform c protein.
Length = 474
Score = 27.9 bits (59), Expect = 7.5
Identities = 11/37 (29%), Positives = 23/37 (62%)
Frame = +2
Query: 275 SRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMA 385
S+G+AF + + ++A+ ++G L ++L VQ+A
Sbjct: 308 SKGYAFAEYLDPTLTDQAIAGLNGMQLGDKQLVVQLA 344
>Z92813-3|CAB07287.1| 621|Caenorhabditis elegans Hypothetical
protein T28A8.3 protein.
Length = 621
Score = 27.5 bits (58), Expect = 9.9
Identities = 18/55 (32%), Positives = 28/55 (50%)
Frame = +3
Query: 117 MSYGRPPPRIDGMVSLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPEIGTQGKVE 281
+SY R V+L + LT T + +R +F GEV D ++ +I T G V+
Sbjct: 43 LSYRFYYDRFRTSVALNMAKLTEYTIEDRIRVMFGFAGEVSDDFLTKIETIGIVK 97
>Z83240-1|CAB05815.2| 373|Caenorhabditis elegans Hypothetical
protein T23H4.2 protein.
Length = 373
Score = 27.5 bits (58), Expect = 9.9
Identities = 12/36 (33%), Positives = 22/36 (61%)
Frame = +2
Query: 257 DRYTRESRGFAFVRFFERRDAEEALDTMDGRMLDGR 364
D+ E+ +AF+R +RR ++AL+ M+ +D R
Sbjct: 265 DQSPVENARYAFLRSLQRRCTDKALENMEDESMDCR 300
>D10877-1|BAA01645.1| 346|Caenorhabditis elegans hnRNP like protein
protein.
Length = 346
Score = 27.5 bits (58), Expect = 9.9
Identities = 14/39 (35%), Positives = 22/39 (56%), Gaps = 4/39 (10%)
Frame = +2
Query: 254 RDRYTRESRGFAFVRFFERRDAEEAL----DTMDGRMLD 358
RD T+ SRGF FV F + + + A+ +DG+ +D
Sbjct: 56 RDPTTKRSRGFGFVTFSGKTEVDAAMKQRPHIIDGKTVD 94
>AY204178-1|AAO39182.1| 373|Caenorhabditis elegans nuclear receptor
NHR-69 protein.
Length = 373
Score = 27.5 bits (58), Expect = 9.9
Identities = 12/36 (33%), Positives = 22/36 (61%)
Frame = +2
Query: 257 DRYTRESRGFAFVRFFERRDAEEALDTMDGRMLDGR 364
D+ E+ +AF+R +RR ++AL+ M+ +D R
Sbjct: 265 DQSPVENARYAFLRSLQRRCTDKALENMEDESMDCR 300
>AF098501-6|AAL38960.1| 315|Caenorhabditis elegans Hypothetical
protein H28G03.1b protein.
Length = 315
Score = 27.5 bits (58), Expect = 9.9
Identities = 13/27 (48%), Positives = 16/27 (59%)
Frame = +2
Query: 254 RDRYTRESRGFAFVRFFERRDAEEALD 334
RD T+ SRGF FV F AE A++
Sbjct: 82 RDPNTKHSRGFGFVTFASIFSAESAMN 108
>AF098501-5|AAM69104.1| 335|Caenorhabditis elegans Hypothetical
protein H28G03.1c protein.
Length = 335
Score = 27.5 bits (58), Expect = 9.9
Identities = 13/27 (48%), Positives = 16/27 (59%)
Frame = +2
Query: 254 RDRYTRESRGFAFVRFFERRDAEEALD 334
RD T+ SRGF FV F AE A++
Sbjct: 102 RDPNTKHSRGFGFVTFASIFSAESAMN 128
>AF098501-4|AAL38959.1| 336|Caenorhabditis elegans Hypothetical
protein H28G03.1a protein.
Length = 336
Score = 27.5 bits (58), Expect = 9.9
Identities = 13/27 (48%), Positives = 16/27 (59%)
Frame = +2
Query: 254 RDRYTRESRGFAFVRFFERRDAEEALD 334
RD T+ SRGF FV F AE A++
Sbjct: 103 RDPNTKHSRGFGFVTFASIFSAESAMN 129
>AF038613-8|AAL02515.2| 309|Caenorhabditis elegans Human hnrnp a1
homolog protein1, isoform b protein.
Length = 309
Score = 27.5 bits (58), Expect = 9.9
Identities = 14/39 (35%), Positives = 22/39 (56%), Gaps = 4/39 (10%)
Frame = +2
Query: 254 RDRYTRESRGFAFVRFFERRDAEEAL----DTMDGRMLD 358
RD T+ SRGF FV F + + + A+ +DG+ +D
Sbjct: 18 RDPTTKRSRGFGFVTFSGKTEVDAAMKQRPHIIDGKTVD 56
>AF038613-7|ABB51185.1| 308|Caenorhabditis elegans Human hnrnp a1
homolog protein1, isoform c protein.
Length = 308
Score = 27.5 bits (58), Expect = 9.9
Identities = 14/39 (35%), Positives = 22/39 (56%), Gaps = 4/39 (10%)
Frame = +2
Query: 254 RDRYTRESRGFAFVRFFERRDAEEAL----DTMDGRMLD 358
RD T+ SRGF FV F + + + A+ +DG+ +D
Sbjct: 18 RDPTTKRSRGFGFVTFSGKTEVDAAMKQRPHIIDGKTVD 56
>AF038613-6|ABB51186.1| 347|Caenorhabditis elegans Human hnrnp a1
homolog protein1, isoform d protein.
Length = 347
Score = 27.5 bits (58), Expect = 9.9
Identities = 14/39 (35%), Positives = 22/39 (56%), Gaps = 4/39 (10%)
Frame = +2
Query: 254 RDRYTRESRGFAFVRFFERRDAEEAL----DTMDGRMLD 358
RD T+ SRGF FV F + + + A+ +DG+ +D
Sbjct: 56 RDPTTKRSRGFGFVTFSGKTEVDAAMKQRPHIIDGKTVD 94
>AF038613-5|AAB92051.1| 346|Caenorhabditis elegans Human hnrnp a1
homolog protein1, isoform a protein.
Length = 346
Score = 27.5 bits (58), Expect = 9.9
Identities = 14/39 (35%), Positives = 22/39 (56%), Gaps = 4/39 (10%)
Frame = +2
Query: 254 RDRYTRESRGFAFVRFFERRDAEEAL----DTMDGRMLD 358
RD T+ SRGF FV F + + + A+ +DG+ +D
Sbjct: 56 RDPTTKRSRGFGFVTFSGKTEVDAAMKQRPHIIDGKTVD 94
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,340,992
Number of Sequences: 27780
Number of extensions: 282857
Number of successful extensions: 813
Number of sequences better than 10.0: 98
Number of HSP's better than 10.0 without gapping: 710
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 810
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1634564590
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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