Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060430.seq
         (704 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.               21   8.6  
AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    21   8.6  
AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.        21   8.6  
AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.        21   8.6  
AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.        21   8.6  

>DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.
          Length = 828

 Score = 21.4 bits (43), Expect = 8.6
 Identities = 9/27 (33%), Positives = 17/27 (62%)
 Frame = -1

Query: 569 IVSENDCVSGKRPLELFESEQSDCGNG 489
           ++S N  +  K+P++LFE  +S   +G
Sbjct: 430 LISWNPLMQPKQPIKLFEQWKSILESG 456


>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 21.4 bits (43), Expect = 8.6
 Identities = 9/14 (64%), Positives = 9/14 (64%)
 Frame = -3

Query: 693 HTATFHGVHFTPLA 652
           H AT H  H TPLA
Sbjct: 436 HAATPHHQHSTPLA 449


>AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 21.4 bits (43), Expect = 8.6
 Identities = 7/21 (33%), Positives = 11/21 (52%)
 Frame = +3

Query: 309 VVMLKKPWTRWTDECWTAGNF 371
           +V + K W +W D   T  N+
Sbjct: 689 LVSVNKSWNKWNDWQETQNNY 709


>AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 21.4 bits (43), Expect = 8.6
 Identities = 7/21 (33%), Positives = 11/21 (52%)
 Frame = +3

Query: 309 VVMLKKPWTRWTDECWTAGNF 371
           +V + K W +W D   T  N+
Sbjct: 689 LVSVNKSWNKWNDWQETQNNY 709


>AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 21.4 bits (43), Expect = 8.6
 Identities = 7/21 (33%), Positives = 11/21 (52%)
 Frame = +3

Query: 309 VVMLKKPWTRWTDECWTAGNF 371
           +V + K W +W D   T  N+
Sbjct: 689 LVSVNKSWNKWNDWQETQNNY 709


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 175,550
Number of Sequences: 438
Number of extensions: 3486
Number of successful extensions: 6
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21683070
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)