Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV060430.seq
(704 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g64200.2 68418.m08063 arginine/serine-rich splicing factor SC... 56 2e-08
At5g64200.1 68418.m08062 arginine/serine-rich splicing factor SC... 56 2e-08
At3g10400.1 68416.m01246 RNA recognition motif (RRM)-containing ... 50 1e-06
At4g13860.1 68417.m02147 glycine-rich RNA-binding protein, putat... 48 6e-06
At3g13570.1 68416.m01707 SC35-like splicing factor, 30a kD (SCL3... 48 8e-06
At1g55310.1 68414.m06318 SC35-like splicing factor, 33 kD (SCL33... 46 2e-05
At3g23830.2 68416.m02996 glycine-rich RNA-binding protein, putat... 44 7e-05
At3g23830.1 68416.m02995 glycine-rich RNA-binding protein, putat... 44 7e-05
At4g13850.2 68417.m02146 glycine-rich RNA-binding protein (GRP2)... 43 2e-04
At4g13850.1 68417.m02145 glycine-rich RNA-binding protein (GRP2)... 43 2e-04
At3g46020.1 68416.m04979 RNA-binding protein, putative similar t... 43 2e-04
At3g08000.1 68416.m00977 RNA-binding protein, putative similar t... 43 2e-04
At1g13690.1 68414.m01609 RNA recognition motif (RRM)-containing ... 43 2e-04
At3g55460.1 68416.m06159 SC35-like splicing factor, 30 kD (SCL30... 42 3e-04
At3g26420.1 68416.m03295 glycine-rich RNA-binding protein simila... 42 3e-04
At4g24770.1 68417.m03546 31 kDa ribonucleoprotein, chloroplast, ... 42 4e-04
At3g14100.1 68416.m01782 oligouridylate-binding protein, putativ... 42 5e-04
At2g21660.2 68415.m02578 glycine-rich RNA-binding protein (GRP7)... 42 5e-04
At2g21660.1 68415.m02577 glycine-rich RNA-binding protein (GRP7)... 42 5e-04
At5g18810.1 68418.m02235 SC35-like splicing factor, 28 kD (SCL28... 41 7e-04
At4g20030.1 68417.m02932 RNA recognition motif (RRM)-containing ... 41 7e-04
At5g61030.1 68418.m07659 RNA-binding protein, putative similar t... 41 0.001
At1g17370.1 68414.m02118 oligouridylate-binding protein, putativ... 41 0.001
At1g02840.3 68414.m00246 pre-mRNA splicing factor SF2 (SF2) / SR... 41 0.001
At1g02840.2 68414.m00244 pre-mRNA splicing factor SF2 (SF2) / SR... 41 0.001
At1g02840.1 68414.m00245 pre-mRNA splicing factor SF2 (SF2) / SR... 41 0.001
At2g37220.1 68415.m04566 29 kDa ribonucleoprotein, chloroplast, ... 40 0.001
At1g74230.1 68414.m08597 glycine-rich RNA-binding protein simila... 40 0.001
At1g54080.2 68414.m06163 oligouridylate-binding protein, putativ... 40 0.001
At1g54080.1 68414.m06162 oligouridylate-binding protein, putativ... 40 0.001
At4g39260.3 68417.m05559 glycine-rich RNA-binding protein 8 (GRP... 40 0.002
At4g39260.2 68417.m05558 glycine-rich RNA-binding protein 8 (GRP... 40 0.002
At4g39260.1 68417.m05557 glycine-rich RNA-binding protein 8 (GRP... 40 0.002
At3g54230.1 68416.m05994 zinc finger protein-related / D111/G-pa... 40 0.002
At3g52380.1 68416.m05757 33 kDa ribonucleoprotein, chloroplast, ... 40 0.002
At1g60000.1 68414.m06759 29 kDa ribonucleoprotein, chloroplast, ... 40 0.002
At5g50250.1 68418.m06223 31 kDa ribonucleoprotein, chloroplast, ... 40 0.002
At2g16260.1 68415.m01862 glycine-rich RNA-binding protein, putat... 40 0.002
At3g11400.1 68416.m01390 eukaryotic translation initiation facto... 39 0.003
At5g59860.1 68418.m07506 RNA recognition motif (RRM)-containing ... 39 0.004
At4g02430.2 68417.m00330 pre-mRNA splicing factor, putative / SR... 39 0.004
At4g02430.1 68417.m00329 pre-mRNA splicing factor, putative / SR... 39 0.004
At3g53460.2 68416.m05901 29 kDa ribonucleoprotein, chloroplast /... 39 0.004
At3g53460.1 68416.m05900 29 kDa ribonucleoprotein, chloroplast /... 39 0.004
At5g19030.1 68418.m02261 RNA recognition motif (RRM)-containing ... 38 0.006
At5g06000.1 68418.m00665 eukaryotic translation initiation facto... 38 0.006
At4g03110.1 68417.m00420 RNA-binding protein, putative similar t... 38 0.006
At3g50670.1 68416.m05542 U1 small nuclear ribonucleoprotein 70 (... 37 0.011
At1g73530.1 68414.m08511 RNA recognition motif (RRM)-containing ... 37 0.011
At1g07350.1 68414.m00783 transformer serine/arginine-rich ribonu... 37 0.011
At3g49430.1 68416.m05403 pre-mRNA splicing factor, putative stro... 37 0.015
At1g09140.1 68414.m01018 SF2/ASF-like splicing modulator (SRP30)... 37 0.015
At3g47120.1 68416.m05116 RNA recognition motif (RRM)-containing ... 36 0.020
At3g06970.1 68416.m00828 RNA recognition motif (RRM)-containing ... 36 0.020
At5g51300.2 68418.m06360 splicing factor-related contains simila... 36 0.026
At5g51300.1 68418.m06359 splicing factor-related contains simila... 36 0.026
At5g06210.1 68418.m00693 RNA-binding protein, putative contains ... 36 0.026
At3g52150.1 68416.m05724 RNA recognition motif (RRM)-containing ... 36 0.026
At2g37340.1 68415.m04581 splicing factor RSZ33 (RSZ33) nearly id... 36 0.026
At1g60650.2 68414.m06828 glycine-rich RNA-binding protein, putat... 36 0.026
At1g60650.1 68414.m06827 glycine-rich RNA-binding protein, putat... 36 0.026
At1g07350.2 68414.m00784 transformer serine/arginine-rich ribonu... 36 0.026
At5g54580.1 68418.m06794 RNA recognition motif (RRM)-containing ... 36 0.035
At3g19130.1 68416.m02429 RNA-binding protein, putative similar t... 36 0.035
At1g03457.2 68414.m00327 RNA-binding protein, putative similar t... 36 0.035
At1g03457.1 68414.m00326 RNA-binding protein, putative similar t... 36 0.035
At5g04280.1 68418.m00421 glycine-rich RNA-binding protein 35 0.046
At3g53500.2 68416.m05907 zinc knuckle (CCHC-type) family protein... 35 0.046
At2g37340.3 68415.m04580 splicing factor RSZ33 (RSZ33) nearly id... 35 0.046
At2g21440.1 68415.m02551 RNA recognition motif (RRM)-containing ... 35 0.046
At1g49600.1 68414.m05561 RNA-binding protein 47 (RBP47), putativ... 35 0.046
At5g47320.1 68418.m05833 30S ribosomal protein S19, mitochondria... 35 0.060
At3g53500.1 68416.m05906 zinc knuckle (CCHC-type) family protein... 34 0.080
At1g67770.1 68414.m07733 RNA-binding protein, putative similar t... 34 0.080
At5g54900.1 68418.m06838 RNA-binding protein 45 (RBP45), putativ... 34 0.11
At1g01080.1 68414.m00010 33 kDa ribonucleoprotein, chloroplast, ... 34 0.11
At5g03580.1 68418.m00316 polyadenylate-binding protein, putative... 33 0.14
At2g18510.1 68415.m02157 pre-mRNA splicing factor, putative simi... 33 0.14
At1g16610.2 68414.m01990 arginine/serine-rich protein, putative ... 33 0.14
At1g16610.1 68414.m01989 arginine/serine-rich protein, putative ... 33 0.14
At4g35785.2 68417.m05083 transformer serine/arginine-rich ribonu... 33 0.18
At4g35785.1 68417.m05082 transformer serine/arginine-rich ribonu... 33 0.18
At4g26650.1 68417.m03840 RNA recognition motif (RRM)-containing ... 33 0.18
At3g55340.1 68416.m06146 RNA recognition motif (RRM)-containing ... 33 0.18
At5g07290.1 68418.m00832 RNA recognition motif (RRM)-containing ... 33 0.24
At4g27000.1 68417.m03884 RNA-binding protein 45 (RBP45), putativ... 33 0.24
At3g04500.1 68416.m00477 RNA recognition motif (RRM)-containing ... 33 0.24
At2g27330.1 68415.m03286 RNA recognition motif (RRM)-containing ... 33 0.24
At1g49760.1 68414.m05580 polyadenylate-binding protein, putative... 33 0.24
At2g37510.1 68415.m04600 RNA-binding protein, putative similar t... 32 0.32
At5g16260.1 68418.m01899 RNA recognition motif (RRM)-containing ... 32 0.43
At5g19350.1 68418.m02306 RNA-binding protein 45 (RBP45), putative 31 0.56
At4g12640.1 68417.m01989 RNA recognition motif (RRM)-containing ... 31 0.56
At4g00830.1 68417.m00114 RNA recognition motif (RRM)-containing ... 31 0.56
At3g26120.1 68416.m03257 RNA-binding protein, putative similar t... 31 0.56
At3g20930.1 68416.m02645 RNA recognition motif (RRM)-containing ... 31 0.56
At2g36660.1 68415.m04496 polyadenylate-binding protein, putative... 31 0.56
At1g22760.1 68414.m02844 polyadenylate-binding protein 3 (PABP3) 31 0.56
At1g18630.1 68414.m02322 glycine-rich RNA-binding protein, putat... 31 0.56
At5g55550.3 68418.m06922 RNA recognition motif (RRM)-containing ... 31 0.74
At5g55550.2 68418.m06921 RNA recognition motif (RRM)-containing ... 31 0.74
At5g55550.1 68418.m06920 RNA recognition motif (RRM)-containing ... 31 0.74
At4g36960.1 68417.m05238 RNA recognition motif (RRM)-containing ... 31 0.74
At4g34110.1 68417.m04839 polyadenylate-binding protein 2 (PABP2)... 31 0.74
At2g23350.1 68415.m02788 polyadenylate-binding protein, putative... 31 0.74
At1g47500.1 68414.m05272 RNA-binding protein 47 (RBP47), putativ... 31 0.74
At1g47490.2 68414.m05269 RNA-binding protein 47 (RBP47), putativ... 31 0.74
At1g47490.1 68414.m05270 RNA-binding protein 47 (RBP47), putativ... 31 0.74
At5g19030.2 68418.m02262 RNA recognition motif (RRM)-containing ... 31 0.98
At4g09040.1 68417.m01491 RNA recognition motif (RRM)-containing ... 31 0.98
At3g13224.2 68416.m01658 RNA recognition motif (RRM)-containing ... 31 0.98
At5g51120.1 68418.m06339 polyadenylate-binding protein, putative... 30 1.3
At3g18610.1 68416.m02365 nucleolin, putative contains Pfam profi... 30 1.3
At3g13224.1 68416.m01657 RNA recognition motif (RRM)-containing ... 30 1.3
At2g35410.1 68415.m04340 33 kDa ribonucleoprotein, chloroplast, ... 30 1.3
At2g22090.2 68415.m02624 UBP1 interacting protein 1a (UBA1a) nea... 30 1.3
At2g22090.1 68415.m02623 UBP1 interacting protein 1a (UBA1a) nea... 30 1.3
At1g71770.1 68414.m08295 polyadenylate-binding protein 5 (PABP5)... 30 1.3
At1g11650.2 68414.m01337 RNA-binding protein 45 (RBP45), putativ... 30 1.3
At1g11650.1 68414.m01336 RNA-binding protein 45 (RBP45), putativ... 30 1.3
At3g52660.1 68416.m05801 RNA recognition motif (RRM)-containing ... 30 1.7
At3g16380.1 68416.m02074 polyadenylate-binding protein, putative... 30 1.7
At1g34140.1 68414.m04235 polyadenylate-binding protein, putative... 30 1.7
At5g52040.2 68418.m06459 arginine/serine-rich splicing factor RS... 29 2.3
At5g52040.1 68418.m06458 arginine/serine-rich splicing factor RS... 29 2.3
At4g39260.4 68417.m05560 glycine-rich RNA-binding protein 8 (GRP... 29 2.3
At4g25500.1 68417.m03673 arginine/serine-rich splicing factor RS... 29 2.3
At3g09160.1 68416.m01082 RNA recognition motif (RRM)-containing ... 29 2.3
At2g46610.2 68415.m05813 arginine/serine-rich splicing factor, p... 29 2.3
At2g46610.1 68415.m05814 arginine/serine-rich splicing factor, p... 29 2.3
At1g60200.1 68414.m06781 splicing factor PWI domain-containing p... 29 2.3
At5g65260.1 68418.m08209 polyadenylate-binding protein family pr... 29 4.0
At5g10350.2 68418.m01201 polyadenylate-binding protein family pr... 29 4.0
At5g10350.1 68418.m01200 polyadenylate-binding protein family pr... 29 4.0
At4g16280.3 68417.m02471 flowering time control protein / FCA ga... 29 4.0
At4g16280.2 68417.m02470 flowering time control protein / FCA ga... 29 4.0
At4g16280.1 68417.m02469 flowering time control protein / FCA ga... 29 4.0
At3g61860.1 68416.m06947 arginine/serine-rich splicing factor RS... 29 4.0
At2g16940.1 68415.m01952 RNA recognition motif (RRM)-containing ... 29 4.0
At1g71800.1 68414.m08298 cleavage stimulation factor, putative s... 29 4.0
At5g53720.1 68418.m06676 RNA recognition motif (RRM)-containing ... 28 5.2
At4g31580.1 68417.m04485 splicing factor RSZp22 (RSZP22) / 9G8-l... 28 5.2
At2g47310.1 68415.m05906 flowering time control protein-related ... 28 5.2
At2g44710.1 68415.m05564 RNA recognition motif (RRM)-containing ... 28 6.9
At2g24590.1 68415.m02936 splicing factor, putative similar to to... 28 6.9
>At5g64200.2 68418.m08063 arginine/serine-rich splicing factor SC35
contains similarity to splicing factor; contains Pfam
profile PF00076: RNA recognition motif. (a.k.a. RRM,
RBD, or RNP domain)
Length = 303
Score = 56.0 bits (129), Expect = 2e-08
Identities = 28/61 (45%), Positives = 40/61 (65%)
Frame = +2
Query: 203 LTPRFRKVRRSW*YLHSRDRYTRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQM 382
L P F K + RDR T +SRGFAFVR+ + +A +A++ +DGR++DGRE+ VQ
Sbjct: 32 LYPLFAKYGKVVDVFIPRDRRTGDSRGFAFVRYKYKDEAHKAVERLDGRVVDGREITVQF 91
Query: 383 A 385
A
Sbjct: 92 A 92
Score = 42.7 bits (96), Expect = 2e-04
Identities = 21/45 (46%), Positives = 30/45 (66%), Gaps = 1/45 (2%)
Frame = +3
Query: 123 YGRP-PPRIDGMVSLKVDNLTYRTTPEDLRRVFERCGEVGDIYIP 254
+GR PP I SL V N+T+RTT +DL +F + G+V D++IP
Sbjct: 4 FGRSGPPDISDTYSLLVLNITFRTTADDLYPLFAKYGKVVDVFIP 48
>At5g64200.1 68418.m08062 arginine/serine-rich splicing factor SC35
contains similarity to splicing factor; contains Pfam
profile PF00076: RNA recognition motif. (a.k.a. RRM,
RBD, or RNP domain)
Length = 303
Score = 56.0 bits (129), Expect = 2e-08
Identities = 28/61 (45%), Positives = 40/61 (65%)
Frame = +2
Query: 203 LTPRFRKVRRSW*YLHSRDRYTRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQM 382
L P F K + RDR T +SRGFAFVR+ + +A +A++ +DGR++DGRE+ VQ
Sbjct: 32 LYPLFAKYGKVVDVFIPRDRRTGDSRGFAFVRYKYKDEAHKAVERLDGRVVDGREITVQF 91
Query: 383 A 385
A
Sbjct: 92 A 92
Score = 42.7 bits (96), Expect = 2e-04
Identities = 21/45 (46%), Positives = 30/45 (66%), Gaps = 1/45 (2%)
Frame = +3
Query: 123 YGRP-PPRIDGMVSLKVDNLTYRTTPEDLRRVFERCGEVGDIYIP 254
+GR PP I SL V N+T+RTT +DL +F + G+V D++IP
Sbjct: 4 FGRSGPPDISDTYSLLVLNITFRTTADDLYPLFAKYGKVVDVFIP 48
>At3g10400.1 68416.m01246 RNA recognition motif (RRM)-containing
protein low similarity to splicing factor SC35
[Arabidopsis thaliana] GI:9843653; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 261
Score = 50.4 bits (115), Expect = 1e-06
Identities = 22/44 (50%), Positives = 33/44 (75%)
Frame = +2
Query: 254 RDRYTRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMA 385
+DR+TR+SRG AFV + R DA +A +MD ++L+GR+L V +A
Sbjct: 90 KDRHTRQSRGVAFVLYVSREDAAKAARSMDAKILNGRKLTVSIA 133
>At4g13860.1 68417.m02147 glycine-rich RNA-binding protein, putative
similar to Glycine-rich RNA-binding protein 2,
mitochondrial precursor (AtGRP2) (Swiss-Prot:Q9SVM8)
[Arabidopsis thaliana] ; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 87
Score = 48.0 bits (109), Expect = 6e-06
Identities = 21/43 (48%), Positives = 29/43 (67%)
Frame = +2
Query: 254 RDRYTRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQM 382
RDRYT SRGF FV + +AE A+ MDG+ L+GR + V++
Sbjct: 36 RDRYTDRSRGFGFVTYSSHSEAEAAVSGMDGKELNGRRVSVKL 78
>At3g13570.1 68416.m01707 SC35-like splicing factor, 30a kD (SCL30a)
almost identical to SC35-like splicing factor SCL30a
GI:9843661 from [Arabidopsis thaliana]; contains Pfam
profile PF00076: RNA recognition motif. (a.k.a. RRM,
RBD, or RNP domain)
Length = 262
Score = 47.6 bits (108), Expect = 8e-06
Identities = 23/44 (52%), Positives = 28/44 (63%)
Frame = +2
Query: 254 RDRYTRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMA 385
RD YT + RGF F++F + DA EA MDG +L GREL V A
Sbjct: 70 RDYYTGDPRGFGFIQFMDPADAAEAKHQMDGYLLLGRELTVVFA 113
Score = 36.3 bits (80), Expect = 0.020
Identities = 18/32 (56%), Positives = 21/32 (65%)
Frame = +3
Query: 159 SLKVDNLTYRTTPEDLRRVFERCGEVGDIYIP 254
SL V NL + EDLRR FE+ G V DIY+P
Sbjct: 38 SLLVRNLRHDCRQEDLRRPFEQFGPVKDIYLP 69
>At1g55310.1 68414.m06318 SC35-like splicing factor, 33 kD (SCL33)
nearly identical to SC35-like splicing factor SCL33, 33
kD [Arabidopsis thaliana] GI:9843659
Length = 220
Score = 46.4 bits (105), Expect = 2e-05
Identities = 23/44 (52%), Positives = 28/44 (63%)
Frame = +2
Query: 254 RDRYTRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMA 385
RD YT + RGF FV+F + DA +A MDG +L GREL V A
Sbjct: 69 RDYYTGDPRGFGFVQFMDPADAADAKHHMDGYLLLGRELTVVFA 112
Score = 35.1 bits (77), Expect = 0.046
Identities = 17/32 (53%), Positives = 21/32 (65%)
Frame = +3
Query: 159 SLKVDNLTYRTTPEDLRRVFERCGEVGDIYIP 254
SL V NL + EDLR+ FE+ G V DIY+P
Sbjct: 37 SLLVRNLRHDCRQEDLRKSFEQFGPVKDIYLP 68
>At3g23830.2 68416.m02996 glycine-rich RNA-binding protein, putative
similar to Glycine-rich RNA-binding protein 2,
mitochondrial precursor (AtGRP2) (Swiss-Prot:Q9SVM8)
[Arabidopsis thaliana]; contains Pfam profile: PF00076
RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Length = 136
Score = 44.4 bits (100), Expect = 7e-05
Identities = 21/43 (48%), Positives = 27/43 (62%)
Frame = +2
Query: 257 DRYTRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMA 385
DR T SRGF FV F A A+ MDG+ L+GR++RV +A
Sbjct: 69 DRETGRSRGFGFVSFSCEDSANNAIKEMDGKELNGRQIRVNLA 111
>At3g23830.1 68416.m02995 glycine-rich RNA-binding protein, putative
similar to Glycine-rich RNA-binding protein 2,
mitochondrial precursor (AtGRP2) (Swiss-Prot:Q9SVM8)
[Arabidopsis thaliana]; contains Pfam profile: PF00076
RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Length = 136
Score = 44.4 bits (100), Expect = 7e-05
Identities = 21/43 (48%), Positives = 27/43 (62%)
Frame = +2
Query: 257 DRYTRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMA 385
DR T SRGF FV F A A+ MDG+ L+GR++RV +A
Sbjct: 69 DRETGRSRGFGFVSFSCEDSANNAIKEMDGKELNGRQIRVNLA 111
>At4g13850.2 68417.m02146 glycine-rich RNA-binding protein (GRP2)
glycine-rich RNA binding protein 2 AtGRP2 [Arabidopsis
thaliana] GI:2826811
Length = 153
Score = 43.2 bits (97), Expect = 2e-04
Identities = 21/43 (48%), Positives = 26/43 (60%)
Frame = +2
Query: 257 DRYTRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMA 385
DR T SRGF FV F + A A+ MDG+ L+GR +RV A
Sbjct: 69 DRETGRSRGFGFVNFNDEGAATAAISEMDGKELNGRHIRVNPA 111
>At4g13850.1 68417.m02145 glycine-rich RNA-binding protein (GRP2)
glycine-rich RNA binding protein 2 AtGRP2 [Arabidopsis
thaliana] GI:2826811
Length = 158
Score = 43.2 bits (97), Expect = 2e-04
Identities = 21/43 (48%), Positives = 26/43 (60%)
Frame = +2
Query: 257 DRYTRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMA 385
DR T SRGF FV F + A A+ MDG+ L+GR +RV A
Sbjct: 69 DRETGRSRGFGFVNFNDEGAATAAISEMDGKELNGRHIRVNPA 111
>At3g46020.1 68416.m04979 RNA-binding protein, putative similar to
Cold-inducible RNA-binding protein (Glycine-rich
RNA-binding protein CIRP) from {Homo sapiens} SP|Q14011,
{Rattus norvegicus} SP|Q61413,{Xenopus laevis};
SP|O93235; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 102
Score = 43.2 bits (97), Expect = 2e-04
Identities = 18/44 (40%), Positives = 30/44 (68%)
Frame = +2
Query: 254 RDRYTRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMA 385
RD T+ +GF F+ F DA +AL ++DG+++DGR + V++A
Sbjct: 40 RDSETQRPKGFGFITFDSEDDARKALKSLDGKIVDGRLIFVEVA 83
>At3g08000.1 68416.m00977 RNA-binding protein, putative similar to
RNA-binding protein from [Nicotiana tabacum]
GI:15822703, [Nicotiana sylvestris] GI:624925; contains
Pfam profile: PF00076 RNA recognition motif. (a.k.a.
RRM, RBD, or RNP domain)
Length = 143
Score = 43.2 bits (97), Expect = 2e-04
Identities = 22/43 (51%), Positives = 26/43 (60%)
Frame = +2
Query: 257 DRYTRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMA 385
D+ + SRGF FV F E DA A D MDG+ L GR LR+ A
Sbjct: 75 DKGSGRSRGFGFVDFAEEGDALSAKDAMDGKGLLGRPLRISFA 117
>At1g13690.1 68414.m01609 RNA recognition motif (RRM)-containing
protein contains Pfam profile: PF00076 RNA recognition
motif
Length = 177
Score = 43.2 bits (97), Expect = 2e-04
Identities = 21/43 (48%), Positives = 25/43 (58%)
Frame = +2
Query: 257 DRYTRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMA 385
D+ ++ R F FV F ER DA A+D MDG L GR L V A
Sbjct: 47 DQANQKHRSFGFVTFLEREDASAAMDNMDGAELYGRVLTVNYA 89
>At3g55460.1 68416.m06159 SC35-like splicing factor, 30 kD (SCL30)
nearly identical to SC35-like splicing factor SCL30, 30
kD [Arabidopsis thaliana] GI:9843657;
Serine/arginine-rich protein/putative splicing factor,
Arabidopdis thaliana, EMBL:AF099940; contains Pfam
profile PF00076: RNA recognition motif. (a.k.a. RRM,
RBD, or RNP domain)
Length = 262
Score = 42.3 bits (95), Expect = 3e-04
Identities = 21/44 (47%), Positives = 28/44 (63%)
Frame = +2
Query: 254 RDRYTRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMA 385
RD Y+ + RGFAFV F + DA EA +M+ R GRE+ V +A
Sbjct: 80 RDYYSGQPRGFAFVEFVDAYDAGEAQRSMNRRSFAGREITVVVA 123
Score = 35.9 bits (79), Expect = 0.026
Identities = 17/32 (53%), Positives = 20/32 (62%)
Frame = +3
Query: 159 SLKVDNLTYRTTPEDLRRVFERCGEVGDIYIP 254
SL V N+ PE+LR FER G V D+YIP
Sbjct: 48 SLLVRNIPLDCRPEELREPFERFGPVRDVYIP 79
>At3g26420.1 68416.m03295 glycine-rich RNA-binding protein similar
to RNA-binding protein (RZ-1) GB:BAA12064 [Nicotiana
sylvestris]; contains Pfam profile: PF00076 RNA
recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Length = 245
Score = 42.3 bits (95), Expect = 3e-04
Identities = 18/43 (41%), Positives = 28/43 (65%)
Frame = +2
Query: 257 DRYTRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMA 385
D+++ SRGF F+ F E++ +EA+ M+G LDGR + V A
Sbjct: 41 DKFSGRSRGFGFITFDEKKAMDEAIAAMNGMDLDGRTITVDKA 83
>At4g24770.1 68417.m03546 31 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein RNP-T, putative /
RNA-binding protein 1/2/3, putative / RNA-binding
protein cp31, putative similar to SP|Q04836 31 kDa
ribonucleoprotein, chloroplast precursor (RNA-binding
protein RNP-T) (RNA-binding protein 1/2/3) (AtRBP33)
(RNA-binding protein cp31) {Arabidopsis thaliana};
contains InterPro entry IPR000504: RNA-binding region
RNP-1 (RNA recognition motif) (RRM)
Length = 329
Score = 41.9 bits (94), Expect = 4e-04
Identities = 19/43 (44%), Positives = 27/43 (62%)
Frame = +2
Query: 257 DRYTRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMA 385
DR T SRGF FV + + EA+ +DG+ L+GR +RV +A
Sbjct: 278 DRETGRSRGFGFVTMSDVDELNEAISALDGQNLEGRAIRVNVA 320
Score = 30.3 bits (65), Expect = 1.3
Identities = 17/43 (39%), Positives = 24/43 (55%)
Frame = +2
Query: 257 DRYTRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMA 385
+R T +SRGF FV +AE A++ + L+GR L V A
Sbjct: 184 NRETDQSRGFGFVTMSSVDEAETAVEKFNRYDLNGRLLTVNKA 226
>At3g14100.1 68416.m01782 oligouridylate-binding protein, putative
similar to GB:CAB75429 (GI:6996560) from [Nicotiana
plumbaginifolia], contains Pfam profiles: PF00076 RNA
recognition motif (3 copies)
Length = 427
Score = 41.5 bits (93), Expect = 5e-04
Identities = 18/43 (41%), Positives = 28/43 (65%)
Frame = +2
Query: 257 DRYTRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMA 385
D+ T SRGF FV F ++DA+ A++ M+G+ L R++R A
Sbjct: 178 DQKTGRSRGFGFVSFRNQQDAQTAINEMNGKWLSSRQIRCNWA 220
Score = 32.3 bits (70), Expect = 0.32
Identities = 13/39 (33%), Positives = 25/39 (64%)
Frame = +2
Query: 269 RESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMA 385
++ + FV +F+RR A A+ +++GR L G+ ++V A
Sbjct: 93 KDKSSYGFVHYFDRRSAALAILSLNGRHLFGQPIKVNWA 131
>At2g21660.2 68415.m02578 glycine-rich RNA-binding protein (GRP7)
SP|Q03250 Glycine-rich RNA-binding protein 7
{Arabidopsis thaliana}
Length = 159
Score = 41.5 bits (93), Expect = 5e-04
Identities = 19/43 (44%), Positives = 28/43 (65%)
Frame = +2
Query: 257 DRYTRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMA 385
DR T SRGF FV F + + ++A++ M+G+ LDGR + V A
Sbjct: 42 DRETGRSRGFGFVTFKDEKAMKDAIEGMNGQDLDGRSITVNEA 84
>At2g21660.1 68415.m02577 glycine-rich RNA-binding protein (GRP7)
SP|Q03250 Glycine-rich RNA-binding protein 7
{Arabidopsis thaliana}
Length = 176
Score = 41.5 bits (93), Expect = 5e-04
Identities = 19/43 (44%), Positives = 28/43 (65%)
Frame = +2
Query: 257 DRYTRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMA 385
DR T SRGF FV F + + ++A++ M+G+ LDGR + V A
Sbjct: 42 DRETGRSRGFGFVTFKDEKAMKDAIEGMNGQDLDGRSITVNEA 84
>At5g18810.1 68418.m02235 SC35-like splicing factor, 28 kD (SCL28)
nearly identical to SC35-like splicing factor SCL28, 28
kD [Arabidopsis thaliana] GI:9843655; contains Pfam
profile PF00076: RNA recognition motif. (a.k.a. RRM,
RBD, or RNP domain)
Length = 236
Score = 41.1 bits (92), Expect = 7e-04
Identities = 18/44 (40%), Positives = 28/44 (63%)
Frame = +2
Query: 254 RDRYTRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMA 385
R+ YT E RGF FV++ DA EA+ M+ +++ GRE+ + A
Sbjct: 80 RNYYTGEPRGFGFVKYRYAEDAAEAMKRMNHKVIGGREIAIVFA 123
Score = 33.1 bits (72), Expect = 0.18
Identities = 16/35 (45%), Positives = 19/35 (54%)
Frame = +3
Query: 150 GMVSLKVDNLTYRTTPEDLRRVFERCGEVGDIYIP 254
G L + NL P DLR FER G + DIY+P
Sbjct: 45 GPSGLLIRNLPLDARPNDLRDSFERFGPLKDIYLP 79
>At4g20030.1 68417.m02932 RNA recognition motif (RRM)-containing
protein low similarity to heterogeneous nuclear
ribonucleoprotein G [Mus musculus] GI:5579009; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 152
Score = 41.1 bits (92), Expect = 7e-04
Identities = 17/44 (38%), Positives = 30/44 (68%)
Frame = +2
Query: 254 RDRYTRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMA 385
+D + S+G+AF++F + DA A++TMD RM +GR + + +A
Sbjct: 73 KDEAMKRSKGYAFIQFTSQDDAFLAIETMDRRMYNGRMIYIDIA 116
>At5g61030.1 68418.m07659 RNA-binding protein, putative similar to
RNA-binding protein from [Solanum tuberosum]
GI:15822705, [Nicotiana tabacum] GI:15822703, [Nicotiana
sylvestris] GI:624925; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 309
Score = 40.7 bits (91), Expect = 0.001
Identities = 20/43 (46%), Positives = 24/43 (55%)
Frame = +2
Query: 257 DRYTRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMA 385
DR T SRGF FV F A A+ +DGR L GR ++V A
Sbjct: 74 DRETGRSRGFGFVTFTSSEAASSAIQALDGRDLHGRVVKVNYA 116
>At1g17370.1 68414.m02118 oligouridylate-binding protein, putative
similar to oligouridylate binding protein [Nicotiana
plumbaginifolia] GI:6996560; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 419
Score = 40.7 bits (91), Expect = 0.001
Identities = 18/43 (41%), Positives = 27/43 (62%)
Frame = +2
Query: 257 DRYTRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMA 385
D+ T SRGF FV F ++DA+ A+D + G+ L R++R A
Sbjct: 173 DQKTGRSRGFGFVSFRNQQDAQTAIDEITGKWLGSRQIRCNWA 215
Score = 33.1 bits (72), Expect = 0.18
Identities = 14/39 (35%), Positives = 25/39 (64%)
Frame = +2
Query: 269 RESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMA 385
+E + FV +F+RR A A+ +++GR L G+ ++V A
Sbjct: 88 KEKSSYGFVHYFDRRSAGLAILSLNGRHLFGQPIKVNWA 126
>At1g02840.3 68414.m00246 pre-mRNA splicing factor SF2 (SF2) / SR1
protein identical to SP|O22315 Pre-mRNA splicing factor
SF2 (SR1 protein) {Arabidopsis thaliana}
Length = 303
Score = 40.7 bits (91), Expect = 0.001
Identities = 18/35 (51%), Positives = 24/35 (68%)
Frame = +2
Query: 281 GFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMA 385
G+AFV F + RDAE+A+ DG DG LRV++A
Sbjct: 46 GYAFVEFDDARDAEDAIHGRDGYDFDGHRLRVELA 80
>At1g02840.2 68414.m00244 pre-mRNA splicing factor SF2 (SF2) / SR1
protein identical to SP|O22315 Pre-mRNA splicing factor
SF2 (SR1 protein) {Arabidopsis thaliana}
Length = 285
Score = 40.7 bits (91), Expect = 0.001
Identities = 18/35 (51%), Positives = 24/35 (68%)
Frame = +2
Query: 281 GFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMA 385
G+AFV F + RDAE+A+ DG DG LRV++A
Sbjct: 46 GYAFVEFDDARDAEDAIHGRDGYDFDGHRLRVELA 80
>At1g02840.1 68414.m00245 pre-mRNA splicing factor SF2 (SF2) / SR1
protein identical to SP|O22315 Pre-mRNA splicing factor
SF2 (SR1 protein) {Arabidopsis thaliana}
Length = 303
Score = 40.7 bits (91), Expect = 0.001
Identities = 18/35 (51%), Positives = 24/35 (68%)
Frame = +2
Query: 281 GFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMA 385
G+AFV F + RDAE+A+ DG DG LRV++A
Sbjct: 46 GYAFVEFDDARDAEDAIHGRDGYDFDGHRLRVELA 80
>At2g37220.1 68415.m04566 29 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein cp29, putative similar to
SP|Q43349 29 kDa ribonucleoprotein, chloroplast
precursor (RNA-binding protein cp29) {Arabidopsis
thaliana}
Length = 289
Score = 40.3 bits (90), Expect = 0.001
Identities = 17/43 (39%), Positives = 28/43 (65%)
Frame = +2
Query: 257 DRYTRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMA 385
DR + S+GF FV + ++ + A+ ++DG LDGR++RV A
Sbjct: 238 DRDSGRSKGFGFVTYDSSQEVQNAIKSLDGADLDGRQIRVSEA 280
Score = 35.5 bits (78), Expect = 0.035
Identities = 18/40 (45%), Positives = 21/40 (52%)
Frame = +2
Query: 257 DRYTRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRV 376
D+ T SRGF FV + E A +G LDGR LRV
Sbjct: 125 DKITGRSRGFGFVTMSSVSEVEAAAQQFNGYELDGRPLRV 164
>At1g74230.1 68414.m08597 glycine-rich RNA-binding protein similar
to RNA-binding protein GB:S46286 from [Nicotiana
sylvestris]
Length = 289
Score = 40.3 bits (90), Expect = 0.001
Identities = 21/43 (48%), Positives = 26/43 (60%)
Frame = +2
Query: 257 DRYTRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMA 385
DR T SRGFAFV F +A A+ +DG+ L GR +RV A
Sbjct: 68 DRETGRSRGFAFVTFTSTEEASNAMQ-LDGQDLHGRRIRVNYA 109
>At1g54080.2 68414.m06163 oligouridylate-binding protein, putative
similar to oligouridylate binding protein GI:6996560
from [Nicotiana plumbaginifolia]
Length = 430
Score = 40.3 bits (90), Expect = 0.001
Identities = 17/43 (39%), Positives = 28/43 (65%)
Frame = +2
Query: 257 DRYTRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMA 385
D+ T SRGF FV F ++DA+ A++ M+G+ + R++R A
Sbjct: 186 DQKTGRSRGFGFVSFRNQQDAQTAINEMNGKWVSSRQIRCNWA 228
Score = 33.1 bits (72), Expect = 0.18
Identities = 13/39 (33%), Positives = 25/39 (64%)
Frame = +2
Query: 269 RESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMA 385
++ + FV +F+RR A A+ T++GR + G+ ++V A
Sbjct: 97 KDKSSYGFVHYFDRRCASMAIMTLNGRHIFGQPMKVNWA 135
>At1g54080.1 68414.m06162 oligouridylate-binding protein, putative
similar to oligouridylate binding protein GI:6996560
from [Nicotiana plumbaginifolia]
Length = 426
Score = 40.3 bits (90), Expect = 0.001
Identities = 17/43 (39%), Positives = 28/43 (65%)
Frame = +2
Query: 257 DRYTRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMA 385
D+ T SRGF FV F ++DA+ A++ M+G+ + R++R A
Sbjct: 182 DQKTGRSRGFGFVSFRNQQDAQTAINEMNGKWVSSRQIRCNWA 224
Score = 33.1 bits (72), Expect = 0.18
Identities = 13/39 (33%), Positives = 25/39 (64%)
Frame = +2
Query: 269 RESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMA 385
++ + FV +F+RR A A+ T++GR + G+ ++V A
Sbjct: 97 KDKSSYGFVHYFDRRCASMAIMTLNGRHIFGQPMKVNWA 135
>At4g39260.3 68417.m05559 glycine-rich RNA-binding protein 8 (GRP8)
(CCR1) SP|Q03251 Glycine-rich RNA-binding protein 8
(CCR1 protein) (GRP8) {Arabidopsis thaliana} isoform
contains a non-consensus CG acceptor splice site at
intron 2
Length = 92
Score = 39.9 bits (89), Expect = 0.002
Identities = 18/43 (41%), Positives = 27/43 (62%)
Frame = +2
Query: 257 DRYTRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMA 385
DR + SRGF FV F + + +A++ M+G+ LDGR + V A
Sbjct: 40 DRESGRSRGFGFVTFKDEKAMRDAIEEMNGKELDGRVITVNEA 82
>At4g39260.2 68417.m05558 glycine-rich RNA-binding protein 8 (GRP8)
(CCR1) SP|Q03251 Glycine-rich RNA-binding protein 8
(CCR1 protein) (GRP8) {Arabidopsis thaliana} isoform
contains a non-consensus CG acceptor splice site at
intron 2
Length = 126
Score = 39.9 bits (89), Expect = 0.002
Identities = 18/43 (41%), Positives = 27/43 (62%)
Frame = +2
Query: 257 DRYTRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMA 385
DR + SRGF FV F + + +A++ M+G+ LDGR + V A
Sbjct: 40 DRESGRSRGFGFVTFKDEKAMRDAIEEMNGKELDGRVITVNEA 82
>At4g39260.1 68417.m05557 glycine-rich RNA-binding protein 8 (GRP8)
(CCR1) SP|Q03251 Glycine-rich RNA-binding protein 8
(CCR1 protein) (GRP8) {Arabidopsis thaliana} isoform
contains a non-consensus CG acceptor splice site at
intron 2
Length = 169
Score = 39.9 bits (89), Expect = 0.002
Identities = 18/43 (41%), Positives = 27/43 (62%)
Frame = +2
Query: 257 DRYTRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMA 385
DR + SRGF FV F + + +A++ M+G+ LDGR + V A
Sbjct: 40 DRESGRSRGFGFVTFKDEKAMRDAIEEMNGKELDGRVITVNEA 82
>At3g54230.1 68416.m05994 zinc finger protein-related / D111/G-patch
domain-containing protein / RNA recognition motif
(RRM)-containing protein KIAA0122 gene , Homo sapiens,
EMBL:HSDKG02; contains Pfam profiles PF00076: RNA
recognition motif. (a.k.a. RRM, RBD, or RNP domain),
PF01585: G-patch domain, weak hit to PF00641: Zn-finger
in Ran binding protein and others
Length = 1105
Score = 39.9 bits (89), Expect = 0.002
Identities = 21/46 (45%), Positives = 29/46 (63%), Gaps = 2/46 (4%)
Frame = +2
Query: 254 RDRYTRESRGFAFVRFFERRDAEEALDTMDGRMLD--GRELRVQMA 385
RD++T SRGFAFV F+ DA +AL+ + L+ G+ LRV A
Sbjct: 491 RDKFTHVSRGFAFVHFYSVEDATKALEATNRTALERNGKILRVAYA 536
>At3g52380.1 68416.m05757 33 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein cp33, putative similar to
chloroplast RNA-binding protein (cp33) GB:BAA06523
(Arabidopsis thaliana) (Plant Mol. Biol. 27 (3), 529-539
(1995)); contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 329
Score = 39.9 bits (89), Expect = 0.002
Identities = 18/43 (41%), Positives = 27/43 (62%)
Frame = +2
Query: 257 DRYTRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMA 385
+R T SRGF F+ F + + AL TM+G ++GR LR+ +A
Sbjct: 253 ERNTGRSRGFGFISFESAENVQSALATMNGVEVEGRALRLNLA 295
Score = 31.9 bits (69), Expect = 0.43
Identities = 14/40 (35%), Positives = 22/40 (55%)
Frame = +2
Query: 257 DRYTRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRV 376
D+ T SRGF FV +A+EA+ + + GR ++V
Sbjct: 150 DKVTDRSRGFGFVTMGSIEEAKEAMQMFNSSQIGGRTVKV 189
>At1g60000.1 68414.m06759 29 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein cp29, putative similar to
29 kDa ribonucleoprotein chloroplast precursor
{Nicotiana sylvestris} SP|Q08935, SP|Q08937; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM) contains an AG-donor site at
intron.
Length = 258
Score = 39.9 bits (89), Expect = 0.002
Identities = 18/43 (41%), Positives = 28/43 (65%)
Frame = +2
Query: 257 DRYTRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMA 385
D T SRG+ FV + + + E AL+++DG L+GR +RV +A
Sbjct: 211 DGDTGRSRGYGFVCYSSKAEMETALESLDGFELEGRAIRVNLA 253
Score = 35.9 bits (79), Expect = 0.026
Identities = 20/47 (42%), Positives = 26/47 (55%)
Frame = +2
Query: 245 LHSRDRYTRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMA 385
L++RD T +SRGFAFV D +D +DG GR L+V A
Sbjct: 117 LYNRD--TGQSRGFAFVTMSNVEDCNIIIDNLDGTEYLGRALKVNFA 161
>At5g50250.1 68418.m06223 31 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein RNP-T, putative /
RNA-binding protein 1/2/3, putative / RNA-binding
protein cp31, putative similar to SP|Q04836 31 kDa
ribonucleoprotein, chloroplast precursor (RNA-binding
protein RNP-T) (1/2/3) (AtRBP33) (cp31) {Arabidopsis
thaliana}; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 289
Score = 39.5 bits (88), Expect = 0.002
Identities = 17/43 (39%), Positives = 26/43 (60%)
Frame = +2
Query: 257 DRYTRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMA 385
DR T SRGF FV+ + A+ +DG+ L+GR ++V +A
Sbjct: 241 DRETGRSRGFGFVQMSNENEVNVAIAALDGQNLEGRAIKVNVA 283
Score = 31.9 bits (69), Expect = 0.43
Identities = 16/43 (37%), Positives = 25/43 (58%)
Frame = +2
Query: 257 DRYTRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMA 385
+R T +SRGF FV +AE+A++ + ++GR L V A
Sbjct: 147 NRDTDQSRGFGFVTMSTVEEAEKAVEKFNSFEVNGRRLTVNRA 189
>At2g16260.1 68415.m01862 glycine-rich RNA-binding protein, putative
similar to Glycine-rich RNA-binding protein from {Daucus
carota} SP|Q03878, {Sinapis alba} SP|P49311, {Brassica
napus} SP|Q05966, {Arabidopsis thaliana} SP|Q03251;
contains InterPro entry IPR000504: RNA-binding region
RNP-1 (RNA recognition motif) (RRM)
Length = 185
Score = 39.5 bits (88), Expect = 0.002
Identities = 18/41 (43%), Positives = 24/41 (58%)
Frame = +2
Query: 257 DRYTRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQ 379
DR T S+GF FV F + A+D M+G+ LDGR + Q
Sbjct: 78 DRETGRSKGFRFVTFKDEDSMRTAIDRMNGQELDGRNITAQ 118
>At3g11400.1 68416.m01390 eukaryotic translation initiation factor
3G / eIF3g nearly identical to eukaryotic translation
initiation factor 3g [Arabidopsis thaliana] GI:12407751
Length = 294
Score = 39.1 bits (87), Expect = 0.003
Identities = 19/43 (44%), Positives = 26/43 (60%)
Frame = +2
Query: 257 DRYTRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMA 385
D+ T SRGF FV F R DA+ A++ ++G D LRV+ A
Sbjct: 247 DQKTGVSRGFGFVNFVSREDAQRAINKLNGYGYDNLILRVEWA 289
>At5g59860.1 68418.m07506 RNA recognition motif (RRM)-containing
protein similar to SP|Q14011 Cold-inducible RNA-binding
protein (Glycine-rich RNA-binding protein CIRP) {Homo
sapiens}; contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 157
Score = 38.7 bits (86), Expect = 0.004
Identities = 15/44 (34%), Positives = 30/44 (68%)
Frame = +2
Query: 254 RDRYTRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMA 385
+D+ T+ +GF F+ F DA++AL ++G++++GR + V+ A
Sbjct: 99 KDQQTQRPKGFGFITFESEDDAQKALKALNGKIVNGRLIFVETA 142
>At4g02430.2 68417.m00330 pre-mRNA splicing factor, putative / SR1
protein, putative strong similarity to SP|O22315
Pre-mRNA splicing factor SF2 (SR1 protein) {Arabidopsis
thaliana}; cDNA NCBI_gi:15810292 supports a truncated
version while protein evidence supports a longer model.
Length = 278
Score = 38.7 bits (86), Expect = 0.004
Identities = 17/35 (48%), Positives = 24/35 (68%)
Frame = +2
Query: 281 GFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMA 385
G+AFV F + RDA++A+ DG DG LRV++A
Sbjct: 46 GYAFVEFEDARDADDAIYGRDGYDFDGHHLRVELA 80
>At4g02430.1 68417.m00329 pre-mRNA splicing factor, putative / SR1
protein, putative strong similarity to SP|O22315
Pre-mRNA splicing factor SF2 (SR1 protein) {Arabidopsis
thaliana}; cDNA NCBI_gi:15810292 supports a truncated
version while protein evidence supports a longer model.
Length = 178
Score = 38.7 bits (86), Expect = 0.004
Identities = 17/35 (48%), Positives = 24/35 (68%)
Frame = +2
Query: 281 GFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMA 385
G+AFV F + RDA++A+ DG DG LRV++A
Sbjct: 46 GYAFVEFEDARDADDAIYGRDGYDFDGHHLRVELA 80
>At3g53460.2 68416.m05901 29 kDa ribonucleoprotein, chloroplast /
RNA-binding protein cp 29 nearly identical to SP|Q43349
29 kDa ribonucleoprotein, chloroplast precursor
(RNA-binding protein cp29) {Arabidopsis thaliana}
Length = 334
Score = 38.7 bits (86), Expect = 0.004
Identities = 16/43 (37%), Positives = 29/43 (67%)
Frame = +2
Query: 257 DRYTRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMA 385
DR + S+GF FV ++ ++A+++++G LDGR++RV A
Sbjct: 283 DRDSGRSKGFGFVTLSSSQEVQKAINSLNGADLDGRQIRVSEA 325
Score = 32.7 bits (71), Expect = 0.24
Identities = 16/40 (40%), Positives = 20/40 (50%)
Frame = +2
Query: 257 DRYTRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRV 376
D+ T SRGF FV + E A +G +GR LRV
Sbjct: 133 DKVTGRSRGFGFVTMSTAAEVEAAAQQFNGYEFEGRPLRV 172
>At3g53460.1 68416.m05900 29 kDa ribonucleoprotein, chloroplast /
RNA-binding protein cp 29 nearly identical to SP|Q43349
29 kDa ribonucleoprotein, chloroplast precursor
(RNA-binding protein cp29) {Arabidopsis thaliana}
Length = 342
Score = 38.7 bits (86), Expect = 0.004
Identities = 16/43 (37%), Positives = 29/43 (67%)
Frame = +2
Query: 257 DRYTRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMA 385
DR + S+GF FV ++ ++A+++++G LDGR++RV A
Sbjct: 291 DRDSGRSKGFGFVTLSSSQEVQKAINSLNGADLDGRQIRVSEA 333
Score = 32.7 bits (71), Expect = 0.24
Identities = 16/40 (40%), Positives = 20/40 (50%)
Frame = +2
Query: 257 DRYTRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRV 376
D+ T SRGF FV + E A +G +GR LRV
Sbjct: 133 DKVTGRSRGFGFVTMSTAAEVEAAAQQFNGYEFEGRPLRV 172
>At5g19030.1 68418.m02261 RNA recognition motif (RRM)-containing
protein low similarity to Cold-inducible RNA-binding
protein (Glycine-rich RNA-binding protein CIRP) from
{Homo sapiens} SP|Q14011, {Rattus norvegicus}
SP|Q61413,{Xenopus laevis} SP|O93235; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 172
Score = 37.9 bits (84), Expect = 0.006
Identities = 15/38 (39%), Positives = 26/38 (68%)
Frame = +2
Query: 266 TRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQ 379
TR+S G+ +V F + DA+ A++ M+G+ DGR + V+
Sbjct: 114 TRQSLGYGYVWFNSKEDAQSAVEAMNGKFFDGRFILVK 151
>At5g06000.1 68418.m00665 eukaryotic translation initiation factor
3G, putative / eIF3g, putative similar to eukaryotic
translation initiation factor 3g [Arabidopsis thaliana]
GI:12407751; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 276
Score = 37.9 bits (84), Expect = 0.006
Identities = 18/41 (43%), Positives = 25/41 (60%)
Frame = +2
Query: 257 DRYTRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQ 379
D+ T SRGF FV F R DA+ A++ ++G D LRV+
Sbjct: 208 DQKTSMSRGFGFVSFVSREDAQRAINKLNGYGYDNLILRVE 248
>At4g03110.1 68417.m00420 RNA-binding protein, putative similar to
Etr-1 [Danio rerio] GI:7670536, BRUNO-like 6 RNA-binding
protein [Homo sapiens] GI:15341327, CUG-BP and ETR-3
like factor 3 [Homo sapiens] GI:12746392; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 441
Score = 37.9 bits (84), Expect = 0.006
Identities = 17/42 (40%), Positives = 28/42 (66%)
Frame = +2
Query: 257 DRYTRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQM 382
D+ T S+ F FV + + A+ A+D M+GR L G++L+VQ+
Sbjct: 383 DKATGVSKCFGFVSYDSQAAAQNAIDMMNGRHLGGKKLKVQL 424
>At3g50670.1 68416.m05542 U1 small nuclear ribonucleoprotein 70
(U1-70k)
Length = 427
Score = 37.1 bits (82), Expect = 0.011
Identities = 14/42 (33%), Positives = 25/42 (59%)
Frame = +2
Query: 257 DRYTRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQM 382
D+ T + +G+AF+ + RD + A DG+ +DGR + V +
Sbjct: 172 DQLTNKPKGYAFIEYMHTRDMKAAYKQADGQKIDGRRVLVDV 213
>At1g73530.1 68414.m08511 RNA recognition motif (RRM)-containing
protein low similarity to SP|Q03251 Glycine-rich
RNA-binding protein 8 (CCR1 protein) {Arabidopsis
thaliana}; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 181
Score = 37.1 bits (82), Expect = 0.011
Identities = 16/43 (37%), Positives = 26/43 (60%)
Frame = +2
Query: 257 DRYTRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMA 385
D+ +GFAF+R+ +A +A+ M G+ LDGR + V+ A
Sbjct: 111 DKVANRPKGFAFLRYETEEEAMKAIQGMHGKFLDGRVIFVEEA 153
Score = 27.9 bits (59), Expect = 6.9
Identities = 17/46 (36%), Positives = 22/46 (47%), Gaps = 1/46 (2%)
Frame = +3
Query: 102 SILFKMSYGRPPPRIDG-MVSLKVDNLTYRTTPEDLRRVFERCGEV 236
S L S PP G L V L++RTT + LR FE+ G +
Sbjct: 58 SCLSTDSSSSPPSSSSGPKTKLYVSGLSFRTTEDTLRDTFEQFGNL 103
>At1g07350.1 68414.m00783 transformer serine/arginine-rich
ribonucleoprotein, putative similar to GB:Y09506 from
[Nicotiana tabacum] (Plant Mol. Biol. 35 (3), 261-269
(1997))
Length = 382
Score = 37.1 bits (82), Expect = 0.011
Identities = 17/43 (39%), Positives = 25/43 (58%)
Frame = +2
Query: 257 DRYTRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMA 385
D +TRESRGF F+ DA + ++D +L GR + V+ A
Sbjct: 109 DPWTRESRGFGFISMKSVGDANRCIRSLDHSVLQGRVITVEKA 151
>At3g49430.1 68416.m05403 pre-mRNA splicing factor, putative strong
similarity to SP|O22315 Pre-mRNA splicing factor SF2
(SR1 protein) {Arabidopsis thaliana}
Length = 300
Score = 36.7 bits (81), Expect = 0.015
Identities = 17/34 (50%), Positives = 22/34 (64%)
Frame = +2
Query: 284 FAFVRFFERRDAEEALDTMDGRMLDGRELRVQMA 385
+ FV F RDAE+A+ DG LDG LRV++A
Sbjct: 47 YCFVEFEHSRDAEDAIKGRDGYNLDGCRLRVELA 80
>At1g09140.1 68414.m01018 SF2/ASF-like splicing modulator (SRP30)
nearly identical to SF2/ASF-like splicing modulator
Srp30 [Arabidopsis thaliana] GI:4775270
Length = 268
Score = 36.7 bits (81), Expect = 0.015
Identities = 17/35 (48%), Positives = 24/35 (68%)
Frame = +2
Query: 281 GFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMA 385
G+AFV F + RDA++A+ DG DG LRV++A
Sbjct: 46 GYAFVEFEDPRDADDAIYGRDGYDFDGCRLRVEIA 80
>At3g47120.1 68416.m05116 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 352
Score = 36.3 bits (80), Expect = 0.020
Identities = 15/41 (36%), Positives = 29/41 (70%)
Frame = +2
Query: 254 RDRYTRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRV 376
RD+ T +S+GFAF+ + ++R A+D ++G ++ GR ++V
Sbjct: 69 RDKGTGKSKGFAFLAYEDQRSTILAVDNLNGALVLGRTIKV 109
>At3g06970.1 68416.m00828 RNA recognition motif (RRM)-containing
protein contains Pfam profile: PF00076 RNA recognition
motif. (a.k.a. RRM, RBD, or RNP domain)
Length = 272
Score = 36.3 bits (80), Expect = 0.020
Identities = 16/25 (64%), Positives = 20/25 (80%)
Frame = +3
Query: 168 VDNLTYRTTPEDLRRVFERCGEVGD 242
V NLT+RTT +DLRR FE+ G+V D
Sbjct: 16 VGNLTWRTTADDLRRYFEQFGQVVD 40
>At5g51300.2 68418.m06360 splicing factor-related contains
similarity to SF1 protein [Drosophila melanogaster]
GI:6687400
Length = 804
Score = 35.9 bits (79), Expect = 0.026
Identities = 16/44 (36%), Positives = 28/44 (63%)
Frame = +2
Query: 254 RDRYTRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMA 385
+DR T S+G+ FV++ + + A A+ M+G +GR L V++A
Sbjct: 513 KDRVTGLSKGYGFVKYADVQMANTAVQAMNGYRFEGRTLAVRIA 556
>At5g51300.1 68418.m06359 splicing factor-related contains
similarity to SF1 protein [Drosophila melanogaster]
GI:6687400
Length = 804
Score = 35.9 bits (79), Expect = 0.026
Identities = 16/44 (36%), Positives = 28/44 (63%)
Frame = +2
Query: 254 RDRYTRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMA 385
+DR T S+G+ FV++ + + A A+ M+G +GR L V++A
Sbjct: 513 KDRVTGLSKGYGFVKYADVQMANTAVQAMNGYRFEGRTLAVRIA 556
>At5g06210.1 68418.m00693 RNA-binding protein, putative contains
similarity to RNA-binding protein from [Nicotiana
tabacum] GI:15822703, [Nicotiana sylvestris] GI:624925,
[Solanum tuberosum] GI:15822705; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 146
Score = 35.9 bits (79), Expect = 0.026
Identities = 17/43 (39%), Positives = 26/43 (60%)
Frame = +2
Query: 257 DRYTRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMA 385
DR + S+GF FV F +A++AL +G+ L+GR + V A
Sbjct: 68 DRVSDRSKGFGFVTFASADEAQKALMEFNGQQLNGRTIFVDYA 110
>At3g52150.1 68416.m05724 RNA recognition motif (RRM)-containing
protein similar to chloroplast RNA-binding protein cp33
[Arabidopsis thaliana] GI:681912; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM) domain
Length = 253
Score = 35.9 bits (79), Expect = 0.026
Identities = 17/45 (37%), Positives = 26/45 (57%)
Frame = +2
Query: 251 SRDRYTRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMA 385
SR T +S GF FV F D E A+ ++ +L+G+++RV A
Sbjct: 209 SRVPGTSKSTGFGFVTFSSEEDVEAAIVALNNSLLEGQKIRVNKA 253
Score = 33.5 bits (73), Expect = 0.14
Identities = 13/42 (30%), Positives = 24/42 (57%)
Frame = +2
Query: 257 DRYTRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQM 382
D+Y+ SR F F DA ++ ++G ++GRE++V +
Sbjct: 110 DKYSGRSRRFGFATMKSVEDANAVVEKLNGNTVEGREIKVNI 151
>At2g37340.1 68415.m04581 splicing factor RSZ33 (RSZ33) nearly
identical to splicing factor RSZ33 [Arabidopsis
thaliana] GI:9843663; contains Pfam profiles PF00076:
RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain),
PF00098: Zinc knuckle
Length = 290
Score = 35.9 bits (79), Expect = 0.026
Identities = 17/46 (36%), Positives = 26/46 (56%)
Frame = +2
Query: 248 HSRDRYTRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMA 385
+ R R R +AFV F + RDA++A +DGR DG + V+ +
Sbjct: 34 YGRVRDVDMKRDYAFVEFGDPRDADDARHYLDGRDFDGSRITVEFS 79
>At1g60650.2 68414.m06828 glycine-rich RNA-binding protein, putative
similar to RNA binding protein(RZ-1) GI:1435061 from
[Nicotiana sylvestris]; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 292
Score = 35.9 bits (79), Expect = 0.026
Identities = 17/42 (40%), Positives = 24/42 (57%)
Frame = +2
Query: 260 RYTRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMA 385
R T RGF F+ F +RR A++A+ M GR L + + V A
Sbjct: 47 RDTGRPRGFGFITFTDRRGADDAIKHMHGRELGNKVISVNKA 88
>At1g60650.1 68414.m06827 glycine-rich RNA-binding protein, putative
similar to RNA binding protein(RZ-1) GI:1435061 from
[Nicotiana sylvestris]; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 292
Score = 35.9 bits (79), Expect = 0.026
Identities = 17/42 (40%), Positives = 24/42 (57%)
Frame = +2
Query: 260 RYTRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMA 385
R T RGF F+ F +RR A++A+ M GR L + + V A
Sbjct: 47 RDTGRPRGFGFITFTDRRGADDAIKHMHGRELGNKVISVNKA 88
>At1g07350.2 68414.m00784 transformer serine/arginine-rich
ribonucleoprotein, putative similar to GB:Y09506 from
[Nicotiana tabacum] (Plant Mol. Biol. 35 (3), 261-269
(1997))
Length = 129
Score = 35.9 bits (79), Expect = 0.026
Identities = 16/41 (39%), Positives = 24/41 (58%)
Frame = +2
Query: 257 DRYTRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQ 379
D +TRESRGF F+ DA + ++D +L GR + V+
Sbjct: 79 DPWTRESRGFGFISMKSVGDANRCIRSLDHSVLQGRVITVE 119
>At5g54580.1 68418.m06794 RNA recognition motif (RRM)-containing
protein low similarity to RNA-binding protein RGP-3
[Nicotiana sylvestris] GI:1009363; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 156
Score = 35.5 bits (78), Expect = 0.035
Identities = 15/35 (42%), Positives = 22/35 (62%)
Frame = +2
Query: 257 DRYTRESRGFAFVRFFERRDAEEALDTMDGRMLDG 361
DR + S+GF FVR+ D+ + + MDG+ LDG
Sbjct: 90 DRVSGYSKGFGFVRYATLEDSAKGIAGMDGKFLDG 124
Score = 30.7 bits (66), Expect = 0.98
Identities = 15/35 (42%), Positives = 20/35 (57%)
Frame = +3
Query: 138 PRIDGMVSLKVDNLTYRTTPEDLRRVFERCGEVGD 242
P+ + +L V L+ RTT E LR F + GEV D
Sbjct: 50 PQAEPSTNLFVSGLSKRTTSEGLRTAFAQFGEVAD 84
>At3g19130.1 68416.m02429 RNA-binding protein, putative similar to
RNA Binding Protein 47 [Nicotiana plumbaginifolia]
GI:9663769, DNA binding protein ACBF GB:AAC49850 from
[Nicotiana tabacum]; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 435
Score = 35.5 bits (78), Expect = 0.035
Identities = 16/43 (37%), Positives = 24/43 (55%)
Frame = +2
Query: 257 DRYTRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMA 385
D T S+G+ FVRF + + AL M+G R++RV +A
Sbjct: 237 DSNTGRSKGYGFVRFGDENERSRALTEMNGAYCSNRQMRVGIA 279
>At1g03457.2 68414.m00327 RNA-binding protein, putative similar to
Etr-1 [Danio rerio] GI:7670536, BRUNO-like 6 RNA-binding
protein [Homo sapiens] GI:15341327; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 438
Score = 35.5 bits (78), Expect = 0.035
Identities = 15/42 (35%), Positives = 28/42 (66%)
Frame = +2
Query: 257 DRYTRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQM 382
D+ T S+ F F+ + + A+ A++TM+G L G++L+VQ+
Sbjct: 373 DKATGISKCFGFISYDSQAAAQNAINTMNGCQLSGKKLKVQL 414
>At1g03457.1 68414.m00326 RNA-binding protein, putative similar to
Etr-1 [Danio rerio] GI:7670536, BRUNO-like 6 RNA-binding
protein [Homo sapiens] GI:15341327; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 429
Score = 35.5 bits (78), Expect = 0.035
Identities = 15/42 (35%), Positives = 28/42 (66%)
Frame = +2
Query: 257 DRYTRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQM 382
D+ T S+ F F+ + + A+ A++TM+G L G++L+VQ+
Sbjct: 364 DKATGISKCFGFISYDSQAAAQNAINTMNGCQLSGKKLKVQL 405
>At5g04280.1 68418.m00421 glycine-rich RNA-binding protein
Length = 310
Score = 35.1 bits (77), Expect = 0.046
Identities = 17/43 (39%), Positives = 24/43 (55%)
Frame = +2
Query: 257 DRYTRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMA 385
+R T SRGF F+ F +RR +E++ M GR R + V A
Sbjct: 41 ERDTGRSRGFGFITFADRRAMDESIREMHGRDFGDRVISVNRA 83
>At3g53500.2 68416.m05907 zinc knuckle (CCHC-type) family protein
contains Pfam domain PF00098: Zinc knuckle
Length = 284
Score = 35.1 bits (77), Expect = 0.046
Identities = 17/44 (38%), Positives = 25/44 (56%)
Frame = +2
Query: 248 HSRDRYTRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQ 379
+ R R R +AFV F + RDA++A +DGR DG + V+
Sbjct: 34 YGRVRDVDMKRDYAFVEFSDPRDADDARYYLDGRDFDGSRITVE 77
>At2g37340.3 68415.m04580 splicing factor RSZ33 (RSZ33) nearly
identical to splicing factor RSZ33 [Arabidopsis
thaliana] GI:9843663; contains Pfam profiles PF00076:
RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain),
PF00098: Zinc knuckle
Length = 249
Score = 35.1 bits (77), Expect = 0.046
Identities = 15/36 (41%), Positives = 23/36 (63%)
Frame = +2
Query: 278 RGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMA 385
R +AFV F + RDA++A +DGR DG + V+ +
Sbjct: 3 RDYAFVEFGDPRDADDARHYLDGRDFDGSRITVEFS 38
>At2g21440.1 68415.m02551 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 1003
Score = 35.1 bits (77), Expect = 0.046
Identities = 15/38 (39%), Positives = 23/38 (60%)
Frame = +2
Query: 272 ESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMA 385
E RGFAFV+F + D A++ +G + GR + V+ A
Sbjct: 59 EHRGFAFVKFALQEDVNRAIELKNGSTVGGRRITVKQA 96
Score = 31.5 bits (68), Expect = 0.56
Identities = 14/36 (38%), Positives = 21/36 (58%)
Frame = +2
Query: 278 RGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMA 385
+GFAFV+F ++DA A+ +G M R + V A
Sbjct: 372 KGFAFVKFTCKKDAANAIKKFNGHMFGKRPIAVDWA 407
Score = 30.3 bits (65), Expect = 1.3
Identities = 12/32 (37%), Positives = 20/32 (62%)
Frame = +3
Query: 162 LKVDNLTYRTTPEDLRRVFERCGEVGDIYIPE 257
L + NL ++ P D++ VF G V D++IP+
Sbjct: 333 LIIRNLPFQAKPSDIKVVFSAVGFVWDVFIPK 364
>At1g49600.1 68414.m05561 RNA-binding protein 47 (RBP47), putative
similar to DNA binding protein ACBF GB:U90212 GI:1899187
from [Nicotiana tabacum]
Length = 445
Score = 35.1 bits (77), Expect = 0.046
Identities = 15/43 (34%), Positives = 24/43 (55%)
Frame = +2
Query: 257 DRYTRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMA 385
D T S+G+ FVRF + + A+ M+G R++RV +A
Sbjct: 248 DSNTGRSKGYGFVRFGDENERSRAMTEMNGAFCSSRQMRVGIA 290
>At5g47320.1 68418.m05833 30S ribosomal protein S19, mitochondrial
(RPS19)
Length = 212
Score = 34.7 bits (76), Expect = 0.060
Identities = 15/43 (34%), Positives = 24/43 (55%)
Frame = +2
Query: 257 DRYTRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMA 385
++ T SRG+ FV F A A+ M+G+ L+G + V +A
Sbjct: 65 NKVTGRSRGYGFVNFISEDSANSAISAMNGQELNGFNISVNVA 107
>At3g53500.1 68416.m05906 zinc knuckle (CCHC-type) family protein
contains Pfam domain PF00098: Zinc knuckle
Length = 243
Score = 34.3 bits (75), Expect = 0.080
Identities = 15/34 (44%), Positives = 22/34 (64%)
Frame = +2
Query: 278 RGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQ 379
R +AFV F + RDA++A +DGR DG + V+
Sbjct: 3 RDYAFVEFSDPRDADDARYYLDGRDFDGSRITVE 36
>At1g67770.1 68414.m07733 RNA-binding protein, putative similar to
terminal ear1 gb|AAC39463.1
Length = 527
Score = 34.3 bits (75), Expect = 0.080
Identities = 16/42 (38%), Positives = 26/42 (61%)
Frame = +2
Query: 260 RYTRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMA 385
R T R FV FF+ RDA +AL M+G+++ G+ + +Q +
Sbjct: 213 RETPCKREQRFVEFFDVRDAAKALRVMNGKVISGKPMVIQFS 254
>At5g54900.1 68418.m06838 RNA-binding protein 45 (RBP45), putative
contains similarity to polyadenylate-binding protein 5
Length = 387
Score = 33.9 bits (74), Expect = 0.11
Identities = 14/40 (35%), Positives = 23/40 (57%)
Frame = +2
Query: 257 DRYTRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRV 376
DR T S+G+ FVRF + + A+ M+G+ R +R+
Sbjct: 189 DRTTGRSKGYGFVRFADENEQMRAMTEMNGQYCSTRPMRI 228
>At1g01080.1 68414.m00010 33 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein cp33, putative similar to
33 KDA RIBONUCLEOPROTEIN GB:P19684 from [Nicotiana
sylvestris]
Length = 293
Score = 33.9 bits (74), Expect = 0.11
Identities = 17/43 (39%), Positives = 26/43 (60%)
Frame = +2
Query: 251 SRDRYTRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQ 379
SR+ T ESRG +V A+ A+ ++DG + GRE+RV+
Sbjct: 140 SRNPQTGESRGSGYVTMGSINSAKIAIASLDGTEVGGREMRVR 182
>At5g03580.1 68418.m00316 polyadenylate-binding protein, putative /
PABP, putative similar to poly(A)-binding protein
[Triticum aestivum] GI:1737492; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 101
Score = 33.5 bits (73), Expect = 0.14
Identities = 17/36 (47%), Positives = 22/36 (61%)
Frame = +2
Query: 272 ESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQ 379
ESRGFAF+ F A A+ MDGR++ + L VQ
Sbjct: 55 ESRGFAFIEFESADSAGRAMLHMDGRLIGQKILCVQ 90
>At2g18510.1 68415.m02157 pre-mRNA splicing factor, putative similar
to SP|Q15427 Splicing factor 3B subunit 4 (Spliceosome
associated protein 49) (SAP 49) (SF3b50) (Pre-mRNA
splicing factor SF3b 49 kDa subunit) {Homo sapiens};
contains Pfam profile PF00076: RNA recognition motif.
(a.k.a. RRM, RBD, or RNP domain)
Length = 363
Score = 33.5 bits (73), Expect = 0.14
Identities = 15/44 (34%), Positives = 25/44 (56%)
Frame = +2
Query: 254 RDRYTRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMA 385
RD T SRGF F+ + ++ A+++M G+ L R++ V A
Sbjct: 146 RDPDTGNSRGFGFISYDSFEASDAAIESMTGQYLSNRQITVSYA 189
Score = 28.7 bits (61), Expect = 4.0
Identities = 12/44 (27%), Positives = 23/44 (52%)
Frame = +2
Query: 254 RDRYTRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMA 385
+DR T + + F+ + DA+ A+ ++ L G+ +RV A
Sbjct: 58 KDRVTNLHQNYGFIEYRSEEDADYAIKVLNMIKLHGKPIRVNKA 101
>At1g16610.2 68414.m01990 arginine/serine-rich protein, putative
(SR45) similar to arginine/serine-rich protein
GI:6601502 from [Arabidopsis thaliana]
Length = 407
Score = 33.5 bits (73), Expect = 0.14
Identities = 16/39 (41%), Positives = 22/39 (56%)
Frame = +2
Query: 257 DRYTRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELR 373
DR RG +V F R DAE+A MDG +DG+ ++
Sbjct: 132 DRAVNLPRGHGYVEFKARADAEKAQLYMDGAQIDGKVVK 170
>At1g16610.1 68414.m01989 arginine/serine-rich protein, putative
(SR45) similar to arginine/serine-rich protein
GI:6601502 from [Arabidopsis thaliana]
Length = 414
Score = 33.5 bits (73), Expect = 0.14
Identities = 16/39 (41%), Positives = 22/39 (56%)
Frame = +2
Query: 257 DRYTRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELR 373
DR RG +V F R DAE+A MDG +DG+ ++
Sbjct: 132 DRAVNLPRGHGYVEFKARADAEKAQLYMDGAQIDGKVVK 170
>At4g35785.2 68417.m05083 transformer serine/arginine-rich
ribonucleoprotein, putative similar to transformer-SR
ribonucleoprotein [Nicotiana tabacum]
gi|1781299|emb|CAA70700
Length = 141
Score = 33.1 bits (72), Expect = 0.18
Identities = 15/33 (45%), Positives = 21/33 (63%)
Frame = +2
Query: 266 TRESRGFAFVRFFERRDAEEALDTMDGRMLDGR 364
TR SRGFAFV +DAE + ++ +L+GR
Sbjct: 109 TRVSRGFAFVTMSSLKDAERCIKYLNQSVLEGR 141
>At4g35785.1 68417.m05082 transformer serine/arginine-rich
ribonucleoprotein, putative similar to transformer-SR
ribonucleoprotein [Nicotiana tabacum]
gi|1781299|emb|CAA70700
Length = 140
Score = 33.1 bits (72), Expect = 0.18
Identities = 15/33 (45%), Positives = 21/33 (63%)
Frame = +2
Query: 266 TRESRGFAFVRFFERRDAEEALDTMDGRMLDGR 364
TR SRGFAFV +DAE + ++ +L+GR
Sbjct: 108 TRVSRGFAFVTMSSLKDAERCIKYLNQSVLEGR 140
>At4g26650.1 68417.m03840 RNA recognition motif (RRM)-containing
protein contains Pfam profile: PF00076 RNA recognition
motif. (a.k.a. RRM, RBD, or RNP domain)
Length = 455
Score = 33.1 bits (72), Expect = 0.18
Identities = 17/44 (38%), Positives = 25/44 (56%)
Frame = +2
Query: 254 RDRYTRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMA 385
RDR T +RGF F+ F + AE + MD ++DGR + + A
Sbjct: 48 RDRTTGRARGFGFIVFADPSVAERVI--MDKHIIDGRTVEAKKA 89
>At3g55340.1 68416.m06146 RNA recognition motif (RRM)-containing
protein low similarity to nucleolar phosphoprotein
(Nopp52), Tetrahymena thermophila, EMBL:TT51555;
contains InterPro entry IPR000504: RNA-binding region
RNP-1 (RNA recognition motif) (RRM)
Length = 597
Score = 33.1 bits (72), Expect = 0.18
Identities = 14/38 (36%), Positives = 21/38 (55%)
Frame = +3
Query: 114 KMSYGRPPPRIDGMVSLKVDNLTYRTTPEDLRRVFERC 227
K S G P +DG + + NL + TT D+R++F C
Sbjct: 248 KTSSGFAPEMVDGYNRVYIGNLAWDTTERDIRKLFSDC 285
>At5g07290.1 68418.m00832 RNA recognition motif (RRM)-containing
protein Mei2-like protein - Arabidopsis thaliana,
EMBL:D86122
Length = 907
Score = 32.7 bits (71), Expect = 0.24
Identities = 13/36 (36%), Positives = 25/36 (69%)
Frame = +2
Query: 272 ESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQ 379
++RGF V +++ R A++A + GR+L GR+L ++
Sbjct: 245 KNRGFIMVSYYDIRAAQKAARALHGRLLRGRKLDIR 280
Score = 27.5 bits (58), Expect = 9.2
Identities = 12/39 (30%), Positives = 22/39 (56%)
Frame = +2
Query: 260 RYTRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRV 376
R T ++ FF+ R A+ AL ++G + GR+L++
Sbjct: 325 RRTMHENSQVYIEFFDVRKAKVALQGLNGLEVAGRQLKL 363
>At4g27000.1 68417.m03884 RNA-binding protein 45 (RBP45), putative
DNA binding protein ACBF - Nicotiana tabacum,
PID:g1899188
Length = 415
Score = 32.7 bits (71), Expect = 0.24
Identities = 14/39 (35%), Positives = 22/39 (56%)
Frame = +2
Query: 257 DRYTRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELR 373
DR T S+G+ FVRF + + A+ M+G+ R +R
Sbjct: 208 DRTTGRSKGYGFVRFADESEQIRAMTEMNGQYCSSRPMR 246
>At3g04500.1 68416.m00477 RNA recognition motif (RRM)-containing
protein similar to ssRNA-binding protein [Dictyostelium
discoideum] GI:1546894; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 245
Score = 32.7 bits (71), Expect = 0.24
Identities = 13/42 (30%), Positives = 25/42 (59%)
Frame = +2
Query: 254 RDRYTRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQ 379
RD+ T +++G+ FV F D AL M+G+ + R ++++
Sbjct: 170 RDKRTGKTKGYGFVSFLNPADLAAALKEMNGKYVGNRPIKLR 211
>At2g27330.1 68415.m03286 RNA recognition motif (RRM)-containing
protein
Length = 116
Score = 32.7 bits (71), Expect = 0.24
Identities = 13/36 (36%), Positives = 24/36 (66%)
Frame = +2
Query: 257 DRYTRESRGFAFVRFFERRDAEEALDTMDGRMLDGR 364
D+ +GFA+V F + +AE+AL ++ +++DGR
Sbjct: 55 DKIRCRPKGFAYVTFSSKEEAEKALLELNAQLVDGR 90
>At1g49760.1 68414.m05580 polyadenylate-binding protein, putative /
PABP, putative similar to poly(A)-binding protein
GB:AAF66825 GI:7673359 from [Nicotiana tabacum]
Length = 671
Score = 32.7 bits (71), Expect = 0.24
Identities = 13/32 (40%), Positives = 20/32 (62%)
Frame = +2
Query: 272 ESRGFAFVRFFERRDAEEALDTMDGRMLDGRE 367
+S+GF FV F DA A+D ++G+ D +E
Sbjct: 262 KSKGFGFVNFENSDDAARAVDALNGKTFDDKE 293
Score = 28.3 bits (60), Expect = 5.2
Identities = 14/37 (37%), Positives = 21/37 (56%)
Frame = +2
Query: 275 SRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMA 385
SRG FV F +A A+ M+G+M+ + L V +A
Sbjct: 366 SRGSGFVAFSTPEEATRAITEMNGKMIVTKPLYVALA 402
Score = 27.9 bits (59), Expect = 6.9
Identities = 10/35 (28%), Positives = 24/35 (68%)
Frame = +2
Query: 272 ESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRV 376
+S+G+ FV++ A+ A+D ++G +L+ +++ V
Sbjct: 171 QSKGYGFVQYDTDEAAQGAIDKLNGMLLNDKQVYV 205
>At2g37510.1 68415.m04600 RNA-binding protein, putative similar to
SP|P10979 Glycine-rich RNA-binding, abscisic
acid-inducible protein {Zea mays}; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 142
Score = 32.3 bits (70), Expect = 0.32
Identities = 15/35 (42%), Positives = 21/35 (60%)
Frame = +2
Query: 257 DRYTRESRGFAFVRFFERRDAEEALDTMDGRMLDG 361
DR + S+GF FV + DAE+A M+ + LDG
Sbjct: 68 DRDSGRSKGFGFVTYATIEDAEKAKAEMNAKFLDG 102
>At5g16260.1 68418.m01899 RNA recognition motif (RRM)-containing
protein similar to Tat-SF1 - Homo sapiens, GI:1667611;
contains InterPro entry IPR000504: RNA-binding region
RNP-1 (RNA recognition motif) (RRM)
Length = 519
Score = 31.9 bits (69), Expect = 0.43
Identities = 12/35 (34%), Positives = 22/35 (62%)
Frame = +2
Query: 278 RGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQM 382
+G VRF +RRDA++ ++ M+GR R++ +
Sbjct: 454 QGVVLVRFKDRRDAQKCIEAMNGRWYAKRQIHASL 488
>At5g19350.1 68418.m02306 RNA-binding protein 45 (RBP45), putative
Length = 425
Score = 31.5 bits (68), Expect = 0.56
Identities = 17/54 (31%), Positives = 26/54 (48%)
Frame = +3
Query: 120 SYGRPPPRIDGMVSLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPEIGTQGKVE 281
+Y PP ++ V NL T E+L++ F + GEV + IP G V+
Sbjct: 225 AYVAPPESDVTCTTISVANLDQNVTEEELKKAFSQLGEVIYVKIPATKGYGYVQ 278
Score = 31.1 bits (67), Expect = 0.74
Identities = 14/43 (32%), Positives = 22/43 (51%)
Frame = +2
Query: 257 DRYTRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMA 385
D T S+G+ FV+F E + A+ M+G R +R+ A
Sbjct: 151 DPSTGRSKGYGFVKFAEESERNRAMAEMNGLYCSTRPMRISAA 193
>At4g12640.1 68417.m01989 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 823
Score = 31.5 bits (68), Expect = 0.56
Identities = 14/36 (38%), Positives = 21/36 (58%)
Frame = +2
Query: 278 RGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMA 385
R +AFV F DA A++++ G L G LR++ A
Sbjct: 58 RSYAFVNFNHDEDAFAAIESLQGFPLSGNPLRIEFA 93
>At4g00830.1 68417.m00114 RNA recognition motif (RRM)-containing
protein similar to nucleolin protein; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 495
Score = 31.5 bits (68), Expect = 0.56
Identities = 12/44 (27%), Positives = 28/44 (63%)
Frame = +2
Query: 254 RDRYTRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMA 385
+DR + +S+G+AFV F + A++A++ + + G+ +R ++
Sbjct: 149 KDRDSGDSKGYAFVAFKTKDVAQKAIEELHSKEFKGKTIRCSLS 192
Score = 28.7 bits (61), Expect = 4.0
Identities = 16/39 (41%), Positives = 22/39 (56%)
Frame = +3
Query: 159 SLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPEIGTQGK 275
+L V N+ T+ E L+ +F+R GEV I P G GK
Sbjct: 293 ALYVKNIPENTSTEQLKELFQRHGEVTKIVTPP-GKGGK 330
>At3g26120.1 68416.m03257 RNA-binding protein, putative similar to
GB:AAC39463 from [Zea mays], PF00076 RNA recognition
motif (2 copies)
Length = 615
Score = 31.5 bits (68), Expect = 0.56
Identities = 11/32 (34%), Positives = 22/32 (68%)
Frame = +2
Query: 290 FVRFFERRDAEEALDTMDGRMLDGRELRVQMA 385
FV F++ RDA A D M+G+ + G+++ ++ +
Sbjct: 253 FVEFYDVRDAARAFDRMNGKEIGGKQVVIEFS 284
>At3g20930.1 68416.m02645 RNA recognition motif (RRM)-containing
protein contains Pfam profile: PF00076 RNA recognition
motif
Length = 374
Score = 31.5 bits (68), Expect = 0.56
Identities = 13/43 (30%), Positives = 27/43 (62%)
Frame = +2
Query: 257 DRYTRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMA 385
D+ ++ S+G+AF+ + A AL M+G++++G + V +A
Sbjct: 316 DKISKRSKGYAFLEYTTEEAAGTALKEMNGKIINGWMIVVDVA 358
>At2g36660.1 68415.m04496 polyadenylate-binding protein, putative /
PABP, putative
Length = 609
Score = 31.5 bits (68), Expect = 0.56
Identities = 15/38 (39%), Positives = 23/38 (60%)
Frame = +2
Query: 272 ESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMA 385
+S+GF FV F +A +A+ T G+M G+ L V +A
Sbjct: 342 KSKGFGFVCFSTPEEAIDAVKTFHGQMFHGKPLYVAIA 379
Score = 28.3 bits (60), Expect = 5.2
Identities = 15/39 (38%), Positives = 20/39 (51%)
Frame = +2
Query: 269 RESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMA 385
R RG+AFV F DA A +T++G + L V A
Sbjct: 238 RLCRGYAFVNFDNPEDARRAAETVNGTKFGSKCLYVGRA 276
>At1g22760.1 68414.m02844 polyadenylate-binding protein 3 (PABP3)
Length = 660
Score = 31.5 bits (68), Expect = 0.56
Identities = 14/37 (37%), Positives = 22/37 (59%)
Frame = +2
Query: 275 SRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMA 385
SRGF FV + +A AL M+G+M+ + L + +A
Sbjct: 371 SRGFGFVAYSNPEEALRALSEMNGKMIGRKPLYIALA 407
Score = 31.1 bits (67), Expect = 0.74
Identities = 11/37 (29%), Positives = 25/37 (67%)
Frame = +2
Query: 266 TRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRV 376
T S+G+ FV+F + A+ A+D ++G +++ +++ V
Sbjct: 172 TGRSKGYGFVQFEKEESAQAAIDKLNGMLMNDKQVFV 208
>At1g18630.1 68414.m02322 glycine-rich RNA-binding protein, putative
similar to glycine-rich RNA-binding protein from
{Sorghum bicolor} SP|Q99070, GI:1778373 from [Pisum
sativum]; contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 155
Score = 31.5 bits (68), Expect = 0.56
Identities = 17/43 (39%), Positives = 22/43 (51%)
Frame = +2
Query: 257 DRYTRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMA 385
DR + SRGF FV + A A+ M + LDGR + V A
Sbjct: 70 DRESGLSRGFGFVTYDSIEVANNAMQAMQNKELDGRIIGVHPA 112
>At5g55550.3 68418.m06922 RNA recognition motif (RRM)-containing
protein similar to DAZ associated protein 1 [Homo
sapiens] GI:8671754; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 460
Score = 31.1 bits (67), Expect = 0.74
Identities = 16/44 (36%), Positives = 25/44 (56%)
Frame = +2
Query: 254 RDRYTRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMA 385
RDR T +RGF F+ F + +E + MD ++DGR + + A
Sbjct: 39 RDRATGRARGFGFIVFADPCVSERVI--MDKHIIDGRTVEAKKA 80
>At5g55550.2 68418.m06921 RNA recognition motif (RRM)-containing
protein similar to DAZ associated protein 1 [Homo
sapiens] GI:8671754; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 460
Score = 31.1 bits (67), Expect = 0.74
Identities = 16/44 (36%), Positives = 25/44 (56%)
Frame = +2
Query: 254 RDRYTRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMA 385
RDR T +RGF F+ F + +E + MD ++DGR + + A
Sbjct: 39 RDRATGRARGFGFIVFADPCVSERVI--MDKHIIDGRTVEAKKA 80
>At5g55550.1 68418.m06920 RNA recognition motif (RRM)-containing
protein similar to DAZ associated protein 1 [Homo
sapiens] GI:8671754; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 448
Score = 31.1 bits (67), Expect = 0.74
Identities = 16/44 (36%), Positives = 25/44 (56%)
Frame = +2
Query: 254 RDRYTRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMA 385
RDR T +RGF F+ F + +E + MD ++DGR + + A
Sbjct: 39 RDRATGRARGFGFIVFADPCVSERVI--MDKHIIDGRTVEAKKA 80
>At4g36960.1 68417.m05238 RNA recognition motif (RRM)-containing
protein similar to SP|P48809 Heterogeneous nuclear
ribonucleoprotein 27C (hnRNP 48) {Drosophila
melanogaster}; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM);
non-consensus TA donor splice site at exon 6
Length = 379
Score = 31.1 bits (67), Expect = 0.74
Identities = 17/46 (36%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
Frame = +3
Query: 123 YGRPPPRIDGMVS-LKVDNLTYRTTPEDLRRVFERCGEVGDIYIPE 257
YGR P G+ + + V L + +DLR F R G + D YIP+
Sbjct: 228 YGRGEPTTRGIGNKIFVGRLPQEASVDDLRDYFGRFGHIQDAYIPK 273
Score = 30.3 bits (65), Expect = 1.3
Identities = 18/44 (40%), Positives = 23/44 (52%)
Frame = +2
Query: 254 RDRYTRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMA 385
+DR T SRGF +V F DA+ AL L R L V++A
Sbjct: 36 KDRSTGRSRGFGYVTFASAEDAKNAL--KGEHFLGNRILEVKVA 77
>At4g34110.1 68417.m04839 polyadenylate-binding protein 2 (PABP2)
non-consensus TA donor splice site at exon 2,
polyadenylate-binding protein - Triticum aestivum
(common wheat),PIR:T06979
Length = 443
Score = 31.1 bits (67), Expect = 0.74
Identities = 14/38 (36%), Positives = 22/38 (57%)
Frame = +2
Query: 272 ESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMA 385
+S+GF FV F DA A+++++G D +E V A
Sbjct: 67 KSKGFGFVNFENADDAARAVESLNGHKFDDKEWYVGRA 104
Score = 30.3 bits (65), Expect = 1.3
Identities = 13/37 (35%), Positives = 22/37 (59%)
Frame = +2
Query: 275 SRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMA 385
S+G FV F +A EA+ + G+M++ + L V +A
Sbjct: 171 SKGSGFVAFATPEEATEAMSQLSGKMIESKPLYVAIA 207
>At2g23350.1 68415.m02788 polyadenylate-binding protein, putative /
PABP, putative
Length = 662
Score = 31.1 bits (67), Expect = 0.74
Identities = 14/37 (37%), Positives = 22/37 (59%)
Frame = +2
Query: 275 SRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMA 385
S+G FV F +A L+ M+G+M+ G+ L V +A
Sbjct: 367 SKGSGFVAFSAASEASRVLNEMNGKMVGGKPLYVALA 403
>At1g47500.1 68414.m05272 RNA-binding protein 47 (RBP47), putative
similar to DNA binding protein GI:1899187 from
[Nicotiana tabacum]
Length = 434
Score = 31.1 bits (67), Expect = 0.74
Identities = 13/40 (32%), Positives = 22/40 (55%)
Frame = +2
Query: 257 DRYTRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRV 376
D T S+G+ FVRF + + +A+ M+G R +R+
Sbjct: 234 DANTGRSKGYGFVRFGDENERTKAMTEMNGVKCSSRAMRI 273
>At1g47490.2 68414.m05269 RNA-binding protein 47 (RBP47), putative
similar to DNA binding protein GI:1899187 from
[Nicotiana tabacum]
Length = 310
Score = 31.1 bits (67), Expect = 0.74
Identities = 13/40 (32%), Positives = 22/40 (55%)
Frame = +2
Query: 257 DRYTRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRV 376
D T S+G+ FVRF + + +A+ M+G R +R+
Sbjct: 232 DANTGRSKGYGFVRFGDENERTKAMTEMNGVKCSSRAMRI 271
>At1g47490.1 68414.m05270 RNA-binding protein 47 (RBP47), putative
similar to DNA binding protein GI:1899187 from
[Nicotiana tabacum]
Length = 432
Score = 31.1 bits (67), Expect = 0.74
Identities = 13/40 (32%), Positives = 22/40 (55%)
Frame = +2
Query: 257 DRYTRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRV 376
D T S+G+ FVRF + + +A+ M+G R +R+
Sbjct: 232 DANTGRSKGYGFVRFGDENERTKAMTEMNGVKCSSRAMRI 271
>At5g19030.2 68418.m02262 RNA recognition motif (RRM)-containing
protein low similarity to Cold-inducible RNA-binding
protein (Glycine-rich RNA-binding protein CIRP) from
{Homo sapiens} SP|Q14011, {Rattus norvegicus}
SP|Q61413,{Xenopus laevis} SP|O93235; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 126
Score = 30.7 bits (66), Expect = 0.98
Identities = 11/29 (37%), Positives = 21/29 (72%)
Frame = +2
Query: 266 TRESRGFAFVRFFERRDAEEALDTMDGRM 352
TR+S G+ +V F + DA+ A++ M+G++
Sbjct: 95 TRQSLGYGYVWFNSKEDAQSAVEAMNGKV 123
>At4g09040.1 68417.m01491 RNA recognition motif (RRM)-containing
protein low similarity to enhancer binding protein-1;
EBP1 [Entamoeba histolytica] GI:8163877, SP|P19682 28
kDa ribonucleoprotein, chloroplast precursor (28RNP)
{Nicotiana sylvestris}; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 304
Score = 30.7 bits (66), Expect = 0.98
Identities = 13/28 (46%), Positives = 19/28 (67%)
Frame = +3
Query: 162 LKVDNLTYRTTPEDLRRVFERCGEVGDI 245
L N+ + +TPED+R +FE+ G V DI
Sbjct: 96 LIAQNVPWTSTPEDIRSLFEKYGSVIDI 123
>At3g13224.2 68416.m01658 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 358
Score = 30.7 bits (66), Expect = 0.98
Identities = 18/45 (40%), Positives = 26/45 (57%), Gaps = 2/45 (4%)
Frame = +2
Query: 254 RDRYTRESRGFAFVRFFERRDAEEALDTM--DGRMLDGRELRVQM 382
RD T SRGF FV F D+EE +D + G M+D + +V++
Sbjct: 142 RDHETNRSRGFGFVIF----DSEEVVDELLSKGNMIDMADTQVEI 182
Score = 29.9 bits (64), Expect = 1.7
Identities = 11/42 (26%), Positives = 27/42 (64%)
Frame = +2
Query: 254 RDRYTRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQ 379
RDR+T + RGF F+ F + ++ ++ D +++G+++ ++
Sbjct: 52 RDRHTGQPRGFGFITFADPSVVDKVIE--DTHVINGKQVEIK 91
>At5g51120.1 68418.m06339 polyadenylate-binding protein, putative /
PABP, putative contains similarity to poly(A)-binding
protein II [Mus musculus] GI:2351846; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 227
Score = 30.3 bits (65), Expect = 1.3
Identities = 12/31 (38%), Positives = 20/31 (64%)
Frame = +3
Query: 159 SLKVDNLTYRTTPEDLRRVFERCGEVGDIYI 251
S+ V N+ Y TPE++++ F+ CG V + I
Sbjct: 104 SIYVGNVDYACTPEEVQQHFQSCGTVNRVTI 134
>At3g18610.1 68416.m02365 nucleolin, putative contains Pfam profile:
PF00076 RNA recognition motif
Length = 636
Score = 30.3 bits (65), Expect = 1.3
Identities = 12/36 (33%), Positives = 26/36 (72%)
Frame = +2
Query: 278 RGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMA 385
+G+ + F +A++AL+ M+G++L GR++R+ +A
Sbjct: 424 KGYGHIEFASPEEAQKALE-MNGKLLLGRDVRLDLA 458
>At3g13224.1 68416.m01657 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 231
Score = 30.3 bits (65), Expect = 1.3
Identities = 18/45 (40%), Positives = 25/45 (55%), Gaps = 2/45 (4%)
Frame = +2
Query: 254 RDRYTRESRGFAFVRFFERRDAEEALDTM--DGRMLDGRELRVQM 382
RD T SRGF FV F D+EE +D + G M+D + +V +
Sbjct: 142 RDHETNRSRGFGFVIF----DSEEVVDELLSKGNMIDMADTQVSL 182
Score = 29.9 bits (64), Expect = 1.7
Identities = 11/42 (26%), Positives = 27/42 (64%)
Frame = +2
Query: 254 RDRYTRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQ 379
RDR+T + RGF F+ F + ++ ++ D +++G+++ ++
Sbjct: 52 RDRHTGQPRGFGFITFADPSVVDKVIE--DTHVINGKQVEIK 91
>At2g35410.1 68415.m04340 33 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein cp33, putative similar to
SP|P19684 33 kDa ribonucleoprotein, chloroplast
precursor {Nicotiana sylvestris}; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 308
Score = 30.3 bits (65), Expect = 1.3
Identities = 14/38 (36%), Positives = 21/38 (55%)
Frame = +2
Query: 272 ESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMA 385
++RGFAFV +A+ A+D D + GR + V A
Sbjct: 133 KNRGFAFVTMASGEEAQAAIDKFDTFQVSGRIISVSFA 170
>At2g22090.2 68415.m02624 UBP1 interacting protein 1a (UBA1a) nearly
identical to UBP1 interacting protein 1a [Arabidopsis
thaliana] GI:19574236; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM); based on cDNA of partial mRNA for UBP1
interacting protein 1a (uba1a) GI:19574235
Length = 347
Score = 30.3 bits (65), Expect = 1.3
Identities = 17/43 (39%), Positives = 26/43 (60%)
Frame = +2
Query: 257 DRYTRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMA 385
D+ T +++GF FV F R+ A+EAL R+L+ R Q+A
Sbjct: 138 DKATGKAKGFGFVMFKTRKGAKEALKEPKKRILN-RTATCQLA 179
>At2g22090.1 68415.m02623 UBP1 interacting protein 1a (UBA1a) nearly
identical to UBP1 interacting protein 1a [Arabidopsis
thaliana] GI:19574236; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM); based on cDNA of partial mRNA for UBP1
interacting protein 1a (uba1a) GI:19574235
Length = 343
Score = 30.3 bits (65), Expect = 1.3
Identities = 17/43 (39%), Positives = 26/43 (60%)
Frame = +2
Query: 257 DRYTRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMA 385
D+ T +++GF FV F R+ A+EAL R+L+ R Q+A
Sbjct: 138 DKATGKAKGFGFVMFKTRKGAKEALKEPKKRILN-RTATCQLA 179
>At1g71770.1 68414.m08295 polyadenylate-binding protein 5 (PABP5)
identical to GB:Q05196 from [Arabidopsis thaliana]
Length = 668
Score = 30.3 bits (65), Expect = 1.3
Identities = 11/34 (32%), Positives = 24/34 (70%)
Frame = +2
Query: 275 SRGFAFVRFFERRDAEEALDTMDGRMLDGRELRV 376
S+G+ FV+F + A+ A+D ++G +L+ +++ V
Sbjct: 171 SKGYGFVQFEKEETAQAAIDKLNGMLLNDKQVFV 204
Score = 29.5 bits (63), Expect = 2.3
Identities = 14/37 (37%), Positives = 22/37 (59%)
Frame = +2
Query: 275 SRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMA 385
SRGF FV + +A A+ M+G+M+ + L V +A
Sbjct: 367 SRGFGFVAYSNPEEALLAMKEMNGKMIGRKPLYVALA 403
>At1g11650.2 68414.m01337 RNA-binding protein 45 (RBP45), putative
similar to gb|U90212 DNA binding protein ACBF from
Nicotiana tabacum and contains 3 PF|00076 RNA
recognition motif domains. ESTs gb|T44278, gb|R65195,
gb|N65904, gb|H37499, gb|R90487, gb|N95952, gb|T44278,
gb|Z20166, gb|N96891, gb|W43137, gb|F15504, gb|F1
Length = 405
Score = 30.3 bits (65), Expect = 1.3
Identities = 13/40 (32%), Positives = 22/40 (55%)
Frame = +2
Query: 257 DRYTRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRV 376
DR T ++G+ FVRF + + A+ M+G R +R+
Sbjct: 190 DRVTGRTKGYGFVRFSDESEQIRAMTEMNGVPCSTRPMRI 229
>At1g11650.1 68414.m01336 RNA-binding protein 45 (RBP45), putative
similar to gb|U90212 DNA binding protein ACBF from
Nicotiana tabacum and contains 3 PF|00076 RNA
recognition motif domains. ESTs gb|T44278, gb|R65195,
gb|N65904, gb|H37499, gb|R90487, gb|N95952, gb|T44278,
gb|Z20166, gb|N96891, gb|W43137, gb|F15504, gb|F1
Length = 306
Score = 30.3 bits (65), Expect = 1.3
Identities = 13/40 (32%), Positives = 22/40 (55%)
Frame = +2
Query: 257 DRYTRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRV 376
DR T ++G+ FVRF + + A+ M+G R +R+
Sbjct: 190 DRVTGRTKGYGFVRFSDESEQIRAMTEMNGVPCSTRPMRI 229
>At3g52660.1 68416.m05801 RNA recognition motif (RRM)-containing
protein heterogeneous nuclear ribonucleoprotein R, Homo
sapiens, PIR:T02673; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 471
Score = 29.9 bits (64), Expect = 1.7
Identities = 12/40 (30%), Positives = 25/40 (62%)
Frame = +2
Query: 254 RDRYTRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELR 373
R++ + + +G+AFV F + A EA+DT++ G+ ++
Sbjct: 125 REKDSGDGKGYAFVTFRSKDLAAEAIDTLNNTDFRGKRIK 164
>At3g16380.1 68416.m02074 polyadenylate-binding protein, putative /
PABP, putative similar to polyadenylate-binding protein
(poly(A)-binding protein) from {Arabidopsis thaliana}
SP|P42731, [Cucumis sativus] GI:7528270, {Homo sapiens}
SP|Q13310, {Arabidopsis thaliana} SP|Q05196; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 537
Score = 29.9 bits (64), Expect = 1.7
Identities = 14/37 (37%), Positives = 23/37 (62%)
Frame = +2
Query: 275 SRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMA 385
SRGF FV F +A++A++++ G L ++L V A
Sbjct: 241 SRGFGFVNFCNPENAKKAMESLCGLQLGSKKLFVGKA 277
Score = 28.7 bits (61), Expect = 4.0
Identities = 13/35 (37%), Positives = 21/35 (60%)
Frame = +2
Query: 272 ESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRV 376
+S+GF FV+F + A A + G M+ G++L V
Sbjct: 149 QSKGFGFVQFDTEQSAVSARSALHGSMVYGKKLFV 183
Score = 28.7 bits (61), Expect = 4.0
Identities = 12/37 (32%), Positives = 25/37 (67%)
Frame = +2
Query: 275 SRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMA 385
S+GF FV F ++++A ++G ++DG+ + V++A
Sbjct: 343 SKGFGFVCFSNCEESKQAKRYLNGFLVDGKPIVVRVA 379
>At1g34140.1 68414.m04235 polyadenylate-binding protein, putative /
PABP, putative non-consensus splice donor TA at exon 1;
similar to polyadenylate-binding protein
(poly(A)-binding protein) from [Triticum aestivum]
GI:1737492, [Nicotiana tabacum] GI:7673355, {Arabidopsis
thaliana} SP|P42731; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 407
Score = 29.9 bits (64), Expect = 1.7
Identities = 15/38 (39%), Positives = 23/38 (60%)
Frame = +2
Query: 272 ESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMA 385
+SR F FV F + A A++ M+G ++D +EL V A
Sbjct: 157 KSRRFGFVNFEKAEAAVTAIEKMNGVVVDEKELHVGRA 194
Score = 28.7 bits (61), Expect = 4.0
Identities = 12/37 (32%), Positives = 22/37 (59%)
Frame = +2
Query: 275 SRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMA 385
S+G FV F +A +A+ M+G+M+ + + V +A
Sbjct: 262 SKGVGFVEFSTSEEASKAMLKMNGKMVGNKPIYVSLA 298
>At5g52040.2 68418.m06459 arginine/serine-rich splicing factor RSP41
(RSP41) nearly identical to SP|P92966
Arginine/serine-rich splicing factor RSP41 {Arabidopsis
thaliana}
Length = 357
Score = 29.5 bits (63), Expect = 2.3
Identities = 18/37 (48%), Positives = 23/37 (62%), Gaps = 4/37 (10%)
Frame = +2
Query: 281 GFAFVRFFERRDAEEALDTMD----GRMLDGRELRVQ 379
GFAFV + RDAE+A+ +D GR GR LRV+
Sbjct: 36 GFAFVYMEDERDAEDAIRALDRFEYGR--TGRRLRVE 70
>At5g52040.1 68418.m06458 arginine/serine-rich splicing factor RSP41
(RSP41) nearly identical to SP|P92966
Arginine/serine-rich splicing factor RSP41 {Arabidopsis
thaliana}
Length = 356
Score = 29.5 bits (63), Expect = 2.3
Identities = 18/37 (48%), Positives = 23/37 (62%), Gaps = 4/37 (10%)
Frame = +2
Query: 281 GFAFVRFFERRDAEEALDTMD----GRMLDGRELRVQ 379
GFAFV + RDAE+A+ +D GR GR LRV+
Sbjct: 36 GFAFVYMEDERDAEDAIRALDRFEYGR--TGRRLRVE 70
>At4g39260.4 68417.m05560 glycine-rich RNA-binding protein 8 (GRP8)
(CCR1) SP|Q03251 Glycine-rich RNA-binding protein 8
(CCR1 protein) (GRP8) {Arabidopsis thaliana} isoform
contains a non-consensus CG acceptor splice site at
intron 2
Length = 105
Score = 29.5 bits (63), Expect = 2.3
Identities = 12/30 (40%), Positives = 19/30 (63%)
Frame = +2
Query: 257 DRYTRESRGFAFVRFFERRDAEEALDTMDG 346
DR + SRGF FV F + + +A++ M+G
Sbjct: 40 DRESGRSRGFGFVTFKDEKAMRDAIEEMNG 69
>At4g25500.1 68417.m03673 arginine/serine-rich splicing factor RSP40
(RSP40) identical to SP|P92965 Arginine/serine-rich
splicing factor RSP40 {Arabidopsis thaliana}
Length = 350
Score = 29.5 bits (63), Expect = 2.3
Identities = 18/37 (48%), Positives = 23/37 (62%), Gaps = 4/37 (10%)
Frame = +2
Query: 281 GFAFVRFFERRDAEEALDTMD----GRMLDGRELRVQ 379
GFAFV + RDAE+A+ +D GR GR LRV+
Sbjct: 36 GFAFVYMEDERDAEDAIRALDRFEFGR--KGRRLRVE 70
>At3g09160.1 68416.m01082 RNA recognition motif (RRM)-containing
protein contains Pfam profile: PF00076 RNA recognition
motif (aka RRM, RBD, or RNP domain)
Length = 198
Score = 29.5 bits (63), Expect = 2.3
Identities = 9/19 (47%), Positives = 16/19 (84%)
Frame = +3
Query: 201 DLRRVFERCGEVGDIYIPE 257
+L+++F CGE+ D++IPE
Sbjct: 42 ELKKLFSPCGEITDVHIPE 60
>At2g46610.2 68415.m05813 arginine/serine-rich splicing factor,
putative similar to SP|P92964 Arginine/serine-rich
splicing factor RSP31 {Arabidopsis thaliana}
Length = 224
Score = 29.5 bits (63), Expect = 2.3
Identities = 15/31 (48%), Positives = 21/31 (67%), Gaps = 1/31 (3%)
Frame = +2
Query: 269 RESRGFAFVRFFERRDAEEALD-TMDGRMLD 358
R R FAFV+F + DA +ALD T + ++LD
Sbjct: 100 RMRRNFAFVQFATQEDATKALDSTHNSKLLD 130
>At2g46610.1 68415.m05814 arginine/serine-rich splicing factor,
putative similar to SP|P92964 Arginine/serine-rich
splicing factor RSP31 {Arabidopsis thaliana}
Length = 250
Score = 29.5 bits (63), Expect = 2.3
Identities = 15/31 (48%), Positives = 21/31 (67%), Gaps = 1/31 (3%)
Frame = +2
Query: 269 RESRGFAFVRFFERRDAEEALD-TMDGRMLD 358
R R FAFV+F + DA +ALD T + ++LD
Sbjct: 126 RMRRNFAFVQFATQEDATKALDSTHNSKLLD 156
>At1g60200.1 68414.m06781 splicing factor PWI domain-containing
protein / RNA recognition motif (RRM)-containing protein
contains Pfam profiles PF01480: PWI domain, PF00076: RNA
recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Length = 899
Score = 29.5 bits (63), Expect = 2.3
Identities = 14/46 (30%), Positives = 23/46 (50%)
Frame = +2
Query: 245 LHSRDRYTRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQM 382
L + D T++ +GF F F A+ + R +DG+EL V +
Sbjct: 233 LRAEDPTTKKPKGFGFYEFESAEGILRAIRLLTQRTIDGQELLVNV 278
>At5g65260.1 68418.m08209 polyadenylate-binding protein family
protein / PABP family protein low similarity to
poly(A)-binding protein II [Drosophila melanogaster]
GI:6007612; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
domain
Length = 220
Score = 28.7 bits (61), Expect = 4.0
Identities = 12/31 (38%), Positives = 20/31 (64%)
Frame = +3
Query: 159 SLKVDNLTYRTTPEDLRRVFERCGEVGDIYI 251
S+ V N+ Y TPE++++ F+ CG V + I
Sbjct: 93 SVFVGNVDYACTPEEVQQHFQTCGTVHRVTI 123
Score = 28.3 bits (60), Expect = 5.2
Identities = 14/35 (40%), Positives = 21/35 (60%)
Frame = +2
Query: 272 ESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRV 376
+ +GFA+V F E +EAL + L GR+L+V
Sbjct: 130 QPKGFAYVEFVEVEAVQEALQLNESE-LHGRQLKV 163
>At5g10350.2 68418.m01201 polyadenylate-binding protein family
protein / PABP family protein contains weak similarity
to poly(A) binding protein II from [Mus musculus]
GI:2351846, [Xenopus laevis] GI:11527140; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 202
Score = 28.7 bits (61), Expect = 4.0
Identities = 12/31 (38%), Positives = 19/31 (61%)
Frame = +3
Query: 159 SLKVDNLTYRTTPEDLRRVFERCGEVGDIYI 251
S+ V N+ Y TPE+++ F+ CG V + I
Sbjct: 90 SVYVGNVDYACTPEEVQLHFQTCGTVNRVTI 120
Score = 28.3 bits (60), Expect = 5.2
Identities = 14/35 (40%), Positives = 21/35 (60%)
Frame = +2
Query: 272 ESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRV 376
+ +GFA+V F E +EAL + L GR+L+V
Sbjct: 127 QPKGFAYVEFVEVEAVQEALQLNESE-LHGRQLKV 160
>At5g10350.1 68418.m01200 polyadenylate-binding protein family
protein / PABP family protein contains weak similarity
to poly(A) binding protein II from [Mus musculus]
GI:2351846, [Xenopus laevis] GI:11527140; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 217
Score = 28.7 bits (61), Expect = 4.0
Identities = 12/31 (38%), Positives = 19/31 (61%)
Frame = +3
Query: 159 SLKVDNLTYRTTPEDLRRVFERCGEVGDIYI 251
S+ V N+ Y TPE+++ F+ CG V + I
Sbjct: 90 SVYVGNVDYACTPEEVQLHFQTCGTVNRVTI 120
Score = 28.3 bits (60), Expect = 5.2
Identities = 14/35 (40%), Positives = 21/35 (60%)
Frame = +2
Query: 272 ESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRV 376
+ +GFA+V F E +EAL + L GR+L+V
Sbjct: 127 QPKGFAYVEFVEVEAVQEALQLNESE-LHGRQLKV 160
>At4g16280.3 68417.m02471 flowering time control protein / FCA gamma
(FCA) identical to SP|O04425 Flowering time control
protein FCA {Arabidopsis thaliana}; four alternative
splice variants, one splicing isoform contains a
non-consensus CA donor splice site, based on cDNA:
gi:2204090
Length = 533
Score = 28.7 bits (61), Expect = 4.0
Identities = 13/31 (41%), Positives = 20/31 (64%)
Frame = +2
Query: 254 RDRYTRESRGFAFVRFFERRDAEEALDTMDG 346
RD Y R+SRG FV++ + A A+D ++G
Sbjct: 244 RDEY-RQSRGCGFVKYSSKETAMAAIDGLNG 273
>At4g16280.2 68417.m02470 flowering time control protein / FCA gamma
(FCA) identical to SP|O04425 Flowering time control
protein FCA {Arabidopsis thaliana}; four alternative
splice variants, one splicing isoform contains a
non-consensus CA donor splice site, based on cDNA:
gi:2204090
Length = 747
Score = 28.7 bits (61), Expect = 4.0
Identities = 13/31 (41%), Positives = 20/31 (64%)
Frame = +2
Query: 254 RDRYTRESRGFAFVRFFERRDAEEALDTMDG 346
RD Y R+SRG FV++ + A A+D ++G
Sbjct: 244 RDEY-RQSRGCGFVKYSSKETAMAAIDGLNG 273
>At4g16280.1 68417.m02469 flowering time control protein / FCA gamma
(FCA) identical to SP|O04425 Flowering time control
protein FCA {Arabidopsis thaliana}; four alternative
splice variants, one splicing isoform contains a
non-consensus CA donor splice site, based on cDNA:
gi:2204090
Length = 505
Score = 28.7 bits (61), Expect = 4.0
Identities = 13/31 (41%), Positives = 20/31 (64%)
Frame = +2
Query: 254 RDRYTRESRGFAFVRFFERRDAEEALDTMDG 346
RD Y R+SRG FV++ + A A+D ++G
Sbjct: 2 RDEY-RQSRGCGFVKYSSKETAMAAIDGLNG 31
>At3g61860.1 68416.m06947 arginine/serine-rich splicing factor RSP31
(RSP31) identical to SP|P92964 Arginine/serine-rich
splicing factor RSP31 {Arabidopsis thaliana}
Length = 264
Score = 28.7 bits (61), Expect = 4.0
Identities = 14/29 (48%), Positives = 20/29 (68%)
Frame = +2
Query: 257 DRYTRESRGFAFVRFFERRDAEEALDTMD 343
DR +S G+AFV F + RDAE+A+ +D
Sbjct: 29 DRVDMKS-GYAFVYFEDERDAEDAIRKLD 56
>At2g16940.1 68415.m01952 RNA recognition motif (RRM)-containing
protein
Length = 561
Score = 28.7 bits (61), Expect = 4.0
Identities = 15/39 (38%), Positives = 20/39 (51%)
Frame = +3
Query: 138 PRIDGMVSLKVDNLTYRTTPEDLRRVFERCGEVGDIYIP 254
P G L V NL + +DLR+VFE G V + +P
Sbjct: 279 PYSGGARRLYVGNLHINMSEDDLRKVFESFGSVELVQVP 317
>At1g71800.1 68414.m08298 cleavage stimulation factor, putative
similar to cleavage stimulation factor 64 kilodalton
subunit GB:AAD47839 GI:5713194 from [Drosophila
melanogaster], SP|P33240 Cleavage stimulation factor, 64
kDa subunit {Homo sapiens}; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 461
Score = 28.7 bits (61), Expect = 4.0
Identities = 13/43 (30%), Positives = 22/43 (51%)
Frame = +2
Query: 257 DRYTRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMA 385
DR T + +G+ F + + A A + ++GR+LRV A
Sbjct: 43 DRETGKPKGYGFCEYKDEETALSARRNLQSYEINGRQLRVDFA 85
>At5g53720.1 68418.m06676 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 100
Score = 28.3 bits (60), Expect = 5.2
Identities = 15/43 (34%), Positives = 22/43 (51%)
Frame = +2
Query: 257 DRYTRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMA 385
D T+ S+GF FV F E A A + +DGR + ++A
Sbjct: 43 DGATQRSKGFGFVTFREVESATRACEN-PNHTIDGRTVNCKLA 84
>At4g31580.1 68417.m04485 splicing factor RSZp22 (RSZP22) / 9G8-like
SR protein (SRZ22) identical to RSZp22 protein
[Arabidopsis thaliana] gi|2582645|emb|CAA05352, 9G8-like
SR protein [Arabidopsis thaliana] GI:3435094; contains
Pfam profiles PF00076: RNA recognition motif. (a.k.a.
RRM, RBD, or RNP domain) and PF00098: Zinc knuckle;
identical to cDNA 9G8-like SR protein (SRZ22) GI:3435093
Length = 200
Score = 28.3 bits (60), Expect = 5.2
Identities = 11/27 (40%), Positives = 18/27 (66%)
Frame = +2
Query: 269 RESRGFAFVRFFERRDAEEALDTMDGR 349
R G+AF+ F + RDA +A+ +DG+
Sbjct: 35 RRPPGYAFLDFEDPRDARDAIRALDGK 61
>At2g47310.1 68415.m05906 flowering time control protein-related /
FCA gamma-related
Length = 512
Score = 28.3 bits (60), Expect = 5.2
Identities = 14/38 (36%), Positives = 24/38 (63%), Gaps = 1/38 (2%)
Frame = +3
Query: 147 DGMVS-LKVDNLTYRTTPEDLRRVFERCGEVGDIYIPE 257
DG ++ L V ++ T D+R+VFE+ G V +I +P+
Sbjct: 106 DGSIAKLYVAPISKTATEYDIRQVFEKYGNVTEIILPK 143
>At2g44710.1 68415.m05564 RNA recognition motif (RRM)-containing
protein
Length = 809
Score = 27.9 bits (59), Expect = 6.9
Identities = 12/37 (32%), Positives = 23/37 (62%)
Frame = +2
Query: 266 TRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRV 376
T++S+G AF+RF A+ A+ + M++G++ V
Sbjct: 251 TKKSKGSAFLRFATVEQAKRAVKELKSPMINGKKCGV 287
>At2g24590.1 68415.m02936 splicing factor, putative similar to to
RSZp22 protein [Arabidopsis thaliana]
gi|2582645|emb|CAA05352
Length = 196
Score = 27.9 bits (59), Expect = 6.9
Identities = 11/27 (40%), Positives = 18/27 (66%)
Frame = +2
Query: 269 RESRGFAFVRFFERRDAEEALDTMDGR 349
R G+AF+ F + RDA +A+ +DG+
Sbjct: 35 RRPPGYAFLDFEDSRDARDAIREVDGK 61
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,556,622
Number of Sequences: 28952
Number of extensions: 263810
Number of successful extensions: 911
Number of sequences better than 10.0: 145
Number of HSP's better than 10.0 without gapping: 803
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 911
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1516419560
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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