Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV060429.seq
(675 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces... 158 6e-40
SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|ch... 88 9e-19
SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha 2|Schizosacchar... 87 3e-18
SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|... 80 3e-16
SPBC19G7.16 |iws1||transcription elongation factor complex subun... 27 2.5
SPAC29E6.01 |pof11|SPAC30.05, mug156|F-box protein Pof11|Schizos... 27 3.3
SPAP32A8.03c |||ubiquitin-protein ligase E3 |Schizosaccharomyces... 26 4.3
SPBC19C7.11 |||ClC chloride channel |Schizosaccharomyces pombe|c... 26 5.7
SPAC6C3.08 |||gankyrin|Schizosaccharomyces pombe|chr 1|||Manual 25 7.6
SPAC8F11.09c |nnt1||nicotinamide N-methyltransferase Nnt1 |Schiz... 25 7.6
SPBC11C11.11c ||SPBC3B8.12|ATP-dependent DNA helicase Irc3 |Schi... 25 10.0
>SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 448
Score = 158 bits (384), Expect = 6e-40
Identities = 79/134 (58%), Positives = 93/134 (69%)
Frame = +1
Query: 256 VPRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDV 435
VPRA+LVDLEPGTMD+V+SG FG +FRPDN ++GQSGAGN WAKGHYTEGAEL D+VLDV
Sbjct: 60 VPRAVLVDLEPGTMDAVKSGKFGNLFRPDNIIYGQSGAGNIWAKGHYTEGAELADAVLDV 119
Query: 436 VRKEAESW*LPPGIPTDTLARRXHRSGMGTLLIFKIREEYPDRIMNTYSVVHHLKCXTQX 615
VR+EAE+ G SGMGTLL+ KIREEYPDR+M T+SV K
Sbjct: 120 VRREAEACDALQGFQLTHSLGGGTGSGMGTLLLSKIREEYPDRMMATFSVAPAPKSSDTV 179
Query: 616 LXRXTPHFLVHQLV 657
+ +HQLV
Sbjct: 180 VEPYNATLSMHQLV 193
Score = 101 bits (243), Expect = 7e-23
Identities = 42/58 (72%), Positives = 49/58 (84%)
Frame = +2
Query: 80 MREIVHIQAGQCGNQIGAKFWEIISDEHGIDPTGAYHGDSDLQLERINVYYNEASGGK 253
MREIVHIQAGQCGNQ+GA FW I+DEHG+D G YHG S+ Q ER+NVY+NEA+GGK
Sbjct: 1 MREIVHIQAGQCGNQVGAAFWSTIADEHGLDSAGIYHGTSEAQHERLNVYFNEAAGGK 58
>SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 455
Score = 88.2 bits (209), Expect = 9e-19
Identities = 44/110 (40%), Positives = 66/110 (60%)
Frame = +1
Query: 256 VPRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDV 435
VPR+I VDLEP +D VR+GP+ +F P+ V G+ A NN+A+GHYT G E++DSVL+
Sbjct: 66 VPRSIYVDLEPNVIDQVRTGPYKDLFHPEQMVTGKEDASNNYARGHYTVGKEMIDSVLER 125
Query: 436 VRKEAESW*LPPGIPTDTLARRXHRSGMGTLLIFKIREEYPDRIMNTYSV 585
+R+ A++ G SG+G LL+ ++ EY + +SV
Sbjct: 126 IRRMADNCSGLQGFLVFHSFGGGTGSGLGALLLERLNMEYGKKSNLQFSV 175
Score = 46.4 bits (105), Expect = 4e-06
Identities = 41/151 (27%), Positives = 56/151 (37%), Gaps = 8/151 (5%)
Frame = +2
Query: 80 MREIVHIQAGQCGNQIGAKFWEIISDEHGIDPTGAYHGDSDLQLERINVYYNEASGGKSC 259
MRE++ + GQ G QIG WE+ EHGI P G +S ++ + N Y N+ G
Sbjct: 1 MREVISVHVGQAGVQIGNACWELYCLEHGIGPDGFPTENS--EVHKNNSYLNDGFGTFFS 58
Query: 260 XXXXXXXXXXXXXXLSALDLXXXXXXXXXXXXXXPAPVTTGPRDTTRRVLSSSI-----Q 424
++ P + TG D +
Sbjct: 59 ETGQGKFVPRSIYVDLEPNVIDQVRTGPYKDLFHPEQMVTGKEDASNNYARGHYTVGKEM 118
Query: 425 F*TSFERKRNRGD-C--LQGFQLTHSLGGGT 508
+ ER R D C LQGF + HS GGGT
Sbjct: 119 IDSVLERIRRMADNCSGLQGFLVFHSFGGGT 149
>SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha
2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 449
Score = 86.6 bits (205), Expect = 3e-18
Identities = 44/110 (40%), Positives = 63/110 (57%)
Frame = +1
Query: 256 VPRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDV 435
VPR+I VDLEP +D VR+GP+ +F P+ + G+ A NN+A+GHYT G ELVD V D
Sbjct: 62 VPRSIYVDLEPNVIDQVRTGPYRDLFHPEQLITGKEDASNNYARGHYTVGKELVDEVTDK 121
Query: 436 VRKEAESW*LPPGIPTDTLARRXHRSGMGTLLIFKIREEYPDRIMNTYSV 585
+R+ A++ G SG G LL+ ++ EY + +SV
Sbjct: 122 IRRIADNCSGLQGFLVFHSFGGGTGSGFGALLLERLAMEYTKKSKLQFSV 171
Score = 46.0 bits (104), Expect = 5e-06
Identities = 23/60 (38%), Positives = 32/60 (53%), Gaps = 2/60 (3%)
Frame = +2
Query: 80 MREIVHIQAGQCGNQIGAKFWEIISDEHGIDPTGAYHGDSDLQLE--RINVYYNEASGGK 253
MREI+ I GQ G QIG WE+ EHGI P G + ++ Q + +++E GK
Sbjct: 1 MREIISIHVGQAGTQIGNACWELYCLEHGIQPNGYMNPETASQNSDGGFSTFFSETGQGK 60
>SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 446
Score = 80.2 bits (189), Expect = 3e-16
Identities = 37/112 (33%), Positives = 67/112 (59%), Gaps = 2/112 (1%)
Frame = +1
Query: 256 VPRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQS--GAGNNWAKGHYTEGAELVDSVL 429
+PRAIL+DLEP ++++ S +G ++ P+N + ++ GAGNNWA G Y+ + + ++
Sbjct: 61 IPRAILIDLEPRVVNNILSDTYGSLYNPENILITKNGGGAGNNWANG-YSHAERIFEDIM 119
Query: 430 DVVRKEAESW*LPPGIPTDTLARRXHRSGMGTLLIFKIREEYPDRIMNTYSV 585
D++ +EA+ G SG+G+ L+ ++ + YP +I+ TYSV
Sbjct: 120 DMIDREADGSDSLEGFSLLHSIAGGTGSGLGSFLLERLNDRYPKKIIQTYSV 171
Score = 56.4 bits (130), Expect = 4e-09
Identities = 23/53 (43%), Positives = 37/53 (69%)
Frame = +2
Query: 83 REIVHIQAGQCGNQIGAKFWEIISDEHGIDPTGAYHGDSDLQLERINVYYNEA 241
REI+ +QAGQCGNQIG++FW+ + EHGI P G + ++R +V++ ++
Sbjct: 3 REIITLQAGQCGNQIGSQFWQQLCLEHGIGPDGTLESFATEGVDRKDVFFYQS 55
>SPBC19G7.16 |iws1||transcription elongation factor complex subunit
Iws1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 428
Score = 27.1 bits (57), Expect = 2.5
Identities = 10/34 (29%), Positives = 22/34 (64%)
Frame = +2
Query: 119 NQIGAKFWEIISDEHGIDPTGAYHGDSDLQLERI 220
N++G E+++++ +DPT A + DLQ++ +
Sbjct: 133 NELGENEEEVLTEQKQLDPTLAAKKELDLQMDAV 166
>SPAC29E6.01 |pof11|SPAC30.05, mug156|F-box protein
Pof11|Schizosaccharomyces pombe|chr 1|||Manual
Length = 506
Score = 26.6 bits (56), Expect = 3.3
Identities = 14/35 (40%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
Frame = +1
Query: 313 GPFGQIFRPDNFVFGQSGAG-NNWAKGHYTEGAEL 414
GP+G +F P F+F +G NW+ Y E A L
Sbjct: 157 GPYGTMFLPQQFIFDSNGRPLLNWSY-LYKEHAHL 190
>SPAP32A8.03c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 513
Score = 26.2 bits (55), Expect = 4.3
Identities = 15/59 (25%), Positives = 25/59 (42%)
Frame = +1
Query: 322 GQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVVRKEAESW*LPPGIPTDTLAR 498
G+ F P N N G Y GA +D ++ + ++A+ P P D +A+
Sbjct: 323 GEPFNPANMFSNIFNLSGN--PGDYAWGARGLDDIISQLMEQAQGHNAPAPAPEDVIAK 379
>SPBC19C7.11 |||ClC chloride channel |Schizosaccharomyces pombe|chr
2|||Manual
Length = 812
Score = 25.8 bits (54), Expect = 5.7
Identities = 13/49 (26%), Positives = 22/49 (44%), Gaps = 1/49 (2%)
Frame = -1
Query: 495 SECVSWNPWRQSPRFRFLSNDV*N*IDEL-STLRVVSLGPVVTGAGLSE 352
S C +W PW +L + L + + V + P+ G+G+SE
Sbjct: 164 SSCTAWKPWTYKFSLNYLIYTAFALLFVLCAAIMVRDVAPLAAGSGISE 212
>SPAC6C3.08 |||gankyrin|Schizosaccharomyces pombe|chr 1|||Manual
Length = 234
Score = 25.4 bits (53), Expect = 7.6
Identities = 11/25 (44%), Positives = 17/25 (68%)
Frame = +1
Query: 382 AKGHYTEGAELVDSVLDVVRKEAES 456
A+GH G ELV + D +RK++E+
Sbjct: 183 AEGHPDVGVELVRAGADTLRKDSEN 207
>SPAC8F11.09c |nnt1||nicotinamide N-methyltransferase Nnt1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 255
Score = 25.4 bits (53), Expect = 7.6
Identities = 13/32 (40%), Positives = 16/32 (50%)
Frame = -2
Query: 371 PAPDCPKTKLSGRKICPKGPERTESMVPGSKS 276
P+ PK L R I P GPE + + GS S
Sbjct: 20 PSTPPPKEVLHTRVIVPNGPEEIKLRLVGSHS 51
>SPBC11C11.11c ||SPBC3B8.12|ATP-dependent DNA helicase Irc3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 606
Score = 25.0 bits (52), Expect = 10.0
Identities = 17/39 (43%), Positives = 22/39 (56%)
Frame = -1
Query: 420 IDELSTLRVVSLGPVVTGAGLSEDEVVRTEDLSERSRAD 304
+D +LR VSL T AGLS DEV + S+ S A+
Sbjct: 369 LDFCDSLRRVSLHVDPTLAGLSPDEVENFYNKSKNSLAN 407
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,551,737
Number of Sequences: 5004
Number of extensions: 48717
Number of successful extensions: 142
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 125
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 134
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 309878492
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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