Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060429.seq
         (675 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          27   0.22 
AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellif...    26   0.29 
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             23   2.0  
AF004842-1|AAD01205.1|  598|Apis mellifera major royal jelly pro...    22   6.1  

>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 26.6 bits (56), Expect = 0.22
 Identities = 19/60 (31%), Positives = 29/60 (48%), Gaps = 3/60 (5%)
 Frame = +1

Query: 355 GQSGAGNNWAKGHYTEGAELVDSVLDVVRKEAESW*LPP---GIPTDTLARRXHRSGMGT 525
           G SG  ++   G  +   E +D+ L+ +R    S        GIP+ TL +R HR G+ T
Sbjct: 396 GHSGQSSSHHHGSKSWTQEDMDAALEALRNHDMSLTKASATFGIPSTTLWQRAHRLGIDT 455


>AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellifera
            ORF for hypotheticalprotein. ).
          Length = 998

 Score = 26.2 bits (55), Expect = 0.29
 Identities = 17/44 (38%), Positives = 25/44 (56%), Gaps = 2/44 (4%)
 Frame = -3

Query: 139  ELSSDLVAALTSLDMYDFPHFVLFM*TINY--LTLKICSARSTH 14
            E + +L  AL+S++   F HFVL M  IN+  +T  +  AR  H
Sbjct: 872  EFALELKKALSSINEQSFNHFVLKM-GINHGPVTAGVIGARKPH 914


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 23.4 bits (48), Expect = 2.0
 Identities = 12/37 (32%), Positives = 19/37 (51%), Gaps = 1/37 (2%)
 Frame = -1

Query: 375  VTGAGLSEDEVVRTEDLSERSRADR-VHGAGLQVDED 268
            ++ AG  +++  R     +RS  +R VH  G Q D D
Sbjct: 1403 ISRAGSRDEDSTRDSTKLDRSSREREVHNGGQQEDRD 1439


>AF004842-1|AAD01205.1|  598|Apis mellifera major royal jelly
           protein MRJP5 protein.
          Length = 598

 Score = 21.8 bits (44), Expect = 6.1
 Identities = 7/20 (35%), Positives = 13/20 (65%)
 Frame = +1

Query: 541 IREEYPDRIMNTYSVVHHLK 600
           +RE  P ++ N+ +V+H  K
Sbjct: 23  VRENSPRKLANSMNVIHEWK 42


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 177,614
Number of Sequences: 438
Number of extensions: 3704
Number of successful extensions: 10
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20464920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)