Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV060428.seq
(668 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_17881| Best HMM Match : Tubulin (HMM E-Value=0) 309 2e-84
SB_47198| Best HMM Match : Tubulin (HMM E-Value=0) 304 5e-83
SB_17879| Best HMM Match : Tubulin (HMM E-Value=0) 298 2e-81
SB_18752| Best HMM Match : No HMM Matches (HMM E-Value=.) 192 2e-49
SB_39308| Best HMM Match : Tubulin (HMM E-Value=0) 180 7e-46
SB_48074| Best HMM Match : Tubulin (HMM E-Value=4.4e-27) 161 6e-40
SB_19437| Best HMM Match : Tubulin (HMM E-Value=0) 130 1e-30
SB_2674| Best HMM Match : Tubulin (HMM E-Value=0) 128 3e-30
SB_34400| Best HMM Match : Tubulin (HMM E-Value=0) 126 1e-29
SB_22192| Best HMM Match : No HMM Matches (HMM E-Value=.) 126 2e-29
SB_22191| Best HMM Match : No HMM Matches (HMM E-Value=.) 126 2e-29
SB_2003| Best HMM Match : Tubulin (HMM E-Value=0) 126 2e-29
SB_22193| Best HMM Match : No HMM Matches (HMM E-Value=.) 123 1e-28
SB_48961| Best HMM Match : Tubulin (HMM E-Value=0) 99 4e-21
SB_22190| Best HMM Match : No HMM Matches (HMM E-Value=.) 93 1e-19
SB_25311| Best HMM Match : Tubulin (HMM E-Value=0) 87 9e-18
SB_19567| Best HMM Match : No HMM Matches (HMM E-Value=.) 87 9e-18
SB_47142| Best HMM Match : Tubulin (HMM E-Value=5.32493e-44) 77 2e-14
SB_37573| Best HMM Match : No HMM Matches (HMM E-Value=.) 71 9e-13
SB_51156| Best HMM Match : Tubulin_C (HMM E-Value=0) 69 5e-12
SB_28561| Best HMM Match : No HMM Matches (HMM E-Value=.) 68 8e-12
SB_5512| Best HMM Match : Tubulin (HMM E-Value=0) 63 2e-10
SB_35594| Best HMM Match : No HMM Matches (HMM E-Value=.) 59 3e-09
SB_37976| Best HMM Match : Tubulin (HMM E-Value=4.5e-18) 54 1e-07
SB_47795| Best HMM Match : Tubulin_C (HMM E-Value=0.24) 54 1e-07
SB_2586| Best HMM Match : No HMM Matches (HMM E-Value=.) 45 6e-05
SB_17880| Best HMM Match : Tubulin_C (HMM E-Value=0) 44 1e-04
SB_42897| Best HMM Match : No HMM Matches (HMM E-Value=.) 44 1e-04
SB_40336| Best HMM Match : Tubulin_C (HMM E-Value=1.3e-32) 41 0.001
SB_25191| Best HMM Match : zf-B_box (HMM E-Value=1.1) 31 0.64
SB_43794| Best HMM Match : zf-B_box (HMM E-Value=6) 31 1.1
SB_37173| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.0
SB_21701| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.6
SB_49423| Best HMM Match : Dicty_CAD (HMM E-Value=6.4) 29 2.6
SB_5805| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.5
SB_1799| Best HMM Match : zf-C2H2 (HMM E-Value=0) 29 4.5
SB_9489| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.9
SB_14887| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.9
>SB_17881| Best HMM Match : Tubulin (HMM E-Value=0)
Length = 458
Score = 309 bits (758), Expect = 2e-84
Identities = 147/174 (84%), Positives = 153/174 (87%)
Frame = +2
Query: 53 IYSSHK*NKMREIVHIQAGQCGNQIGAKFWEIISDEHGIDPTGAYHGDSDLQLERINVYY 232
+YSS KMREIVH QAGQCGNQIGAKFWE+ISDEHGIDPTG YHGDSDLQLERINVYY
Sbjct: 205 VYSSKLLFKMREIVHCQAGQCGNQIGAKFWEVISDEHGIDPTGTYHGDSDLQLERINVYY 264
Query: 233 NEASGGQDVPRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQXGAGNNWAKGHYTEGAE 412
NEA+GG+ VPRA+LVDLEPGTMDSVRSGPFGQIFRPDNFVFGQ GAGNNWAKGHYTEGAE
Sbjct: 265 NEATGGKYVPRAVLVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAE 324
Query: 413 LVDSVLDVVRKEAESCDLPPGIPTDTLARAGGPVSGMGXLLISKIREEYPDRIM 574
LVDSVLDVVRKEAESCD G T + GG SGMG LLISKIREEYPDRIM
Sbjct: 325 LVDSVLDVVRKEAESCDCLQGFQL-THSLGGGTGSGMGTLLISKIREEYPDRIM 377
Score = 44.0 bits (99), Expect = 1e-04
Identities = 31/68 (45%), Positives = 33/68 (48%)
Frame = +3
Query: 465 CLQGFQLTHSLGRAARFPVWXXXXXXXXXXXTLTE**NTYSVVPSPKVSDTVSRTVQRHT 644
CLQGFQLTHSLG + NT+SVVPSPKVSDTV T
Sbjct: 342 CLQGFQLTHSLGGGTGSGMGTLLISKIREEYP-DRIMNTFSVVPSPKVSDTVVEPYNA-T 399
Query: 645 FSFINLVE 668
S LVE
Sbjct: 400 LSVHQLVE 407
>SB_47198| Best HMM Match : Tubulin (HMM E-Value=0)
Length = 446
Score = 304 bits (746), Expect = 5e-83
Identities = 144/165 (87%), Positives = 148/165 (89%)
Frame = +2
Query: 80 MREIVHIQAGQCGNQIGAKFWEIISDEHGIDPTGAYHGDSDLQLERINVYYNEASGGQDV 259
MREIVH QAGQCGNQIGAKFWE+ISDEHGIDPTG YHGDSDLQLERINVYYNEA+GG+ V
Sbjct: 1 MREIVHCQAGQCGNQIGAKFWEVISDEHGIDPTGTYHGDSDLQLERINVYYNEATGGKYV 60
Query: 260 PRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQXGAGNNWAKGHYTEGAELVDSVLDVV 439
PRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQ GAGNNWAKGHYTEGAELVDSVLDVV
Sbjct: 61 PRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVV 120
Query: 440 RKEAESCDLPPGIPTDTLARAGGPVSGMGXLLISKIREEYPDRIM 574
RKEAESCD G T + GG SGMG LLISKIREEYPDRIM
Sbjct: 121 RKEAESCDCLQGFQL-THSLGGGTGSGMGTLLISKIREEYPDRIM 164
Score = 44.0 bits (99), Expect = 1e-04
Identities = 31/68 (45%), Positives = 33/68 (48%)
Frame = +3
Query: 465 CLQGFQLTHSLGRAARFPVWXXXXXXXXXXXTLTE**NTYSVVPSPKVSDTVSRTVQRHT 644
CLQGFQLTHSLG + NT+SVVPSPKVSDTV T
Sbjct: 129 CLQGFQLTHSLGGGTGSGMGTLLISKIREEYP-DRIMNTFSVVPSPKVSDTVVEPYNA-T 186
Query: 645 FSFINLVE 668
S LVE
Sbjct: 187 LSVHQLVE 194
>SB_17879| Best HMM Match : Tubulin (HMM E-Value=0)
Length = 446
Score = 298 bits (732), Expect = 2e-81
Identities = 139/165 (84%), Positives = 148/165 (89%)
Frame = +2
Query: 80 MREIVHIQAGQCGNQIGAKFWEIISDEHGIDPTGAYHGDSDLQLERINVYYNEASGGQDV 259
MREIV +QAGQCGNQIGAKFWE+ISDEHGIDPTG YHGDSDLQLERINVYYNEA+GG+ V
Sbjct: 1 MREIVSLQAGQCGNQIGAKFWEVISDEHGIDPTGTYHGDSDLQLERINVYYNEATGGKYV 60
Query: 260 PRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQXGAGNNWAKGHYTEGAELVDSVLDVV 439
PR++L+DLEPGTMDSVRSGPFGQIFRPDNFVFGQ GAGNNWAKGHYTEGAEL+DSVLDVV
Sbjct: 61 PRSVLIDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELMDSVLDVV 120
Query: 440 RKEAESCDLPPGIPTDTLARAGGPVSGMGXLLISKIREEYPDRIM 574
RKEAESCD G T + GG SGMG LLISKIREEYPDRIM
Sbjct: 121 RKEAESCDCIQGFQL-THSLGGGTGSGMGTLLISKIREEYPDRIM 164
Score = 42.7 bits (96), Expect = 3e-04
Identities = 29/68 (42%), Positives = 33/68 (48%)
Frame = +3
Query: 465 CLQGFQLTHSLGRAARFPVWXXXXXXXXXXXTLTE**NTYSVVPSPKVSDTVSRTVQRHT 644
C+QGFQLTHSLG + NT+S+VPSPKVSDTV T
Sbjct: 129 CIQGFQLTHSLGGGTGSGMGTLLISKIREEYP-DRIMNTFSIVPSPKVSDTVVEPYNA-T 186
Query: 645 FSFINLVE 668
S LVE
Sbjct: 187 LSVHQLVE 194
>SB_18752| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 112
Score = 192 bits (468), Expect = 2e-49
Identities = 86/92 (93%), Positives = 89/92 (96%)
Frame = +2
Query: 80 MREIVHIQAGQCGNQIGAKFWEIISDEHGIDPTGAYHGDSDLQLERINVYYNEASGGQDV 259
MREIVH QAGQCGNQIGAKFWE+ISDEHGIDPTG YHGDSDLQLERINVYYNEA+GG+ V
Sbjct: 1 MREIVHCQAGQCGNQIGAKFWEVISDEHGIDPTGTYHGDSDLQLERINVYYNEATGGKYV 60
Query: 260 PRAILVDLEPGTMDSVRSGPFGQIFRPDNFVF 355
PRAILVDLEPGTMDSVRSGPFGQIFRPDNFVF
Sbjct: 61 PRAILVDLEPGTMDSVRSGPFGQIFRPDNFVF 92
>SB_39308| Best HMM Match : Tubulin (HMM E-Value=0)
Length = 391
Score = 180 bits (439), Expect = 7e-46
Identities = 89/109 (81%), Positives = 92/109 (84%)
Frame = +2
Query: 248 GQDVPRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQXGAGNNWAKGHYTEGAELVDSV 427
G+ VPRA+LVDLEPGTMDSVRSGPFGQIFRPDNFVFGQ GAGNNWAKGHYTEGAELVDSV
Sbjct: 2 GKYVPRAVLVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSV 61
Query: 428 LDVVRKEAESCDLPPGIPTDTLARAGGPVSGMGXLLISKIREEYPDRIM 574
LDVVRKEAESCD G T + GG SGM LLI KIREEYPDRIM
Sbjct: 62 LDVVRKEAESCDCIQGFQL-THSLGGGTGSGMVTLLILKIREEYPDRIM 109
Score = 42.7 bits (96), Expect = 3e-04
Identities = 30/68 (44%), Positives = 33/68 (48%)
Frame = +3
Query: 465 CLQGFQLTHSLGRAARFPVWXXXXXXXXXXXTLTE**NTYSVVPSPKVSDTVSRTVQRHT 644
C+QGFQLTHSLG + NT+SVVPSPKVSDTV T
Sbjct: 74 CIQGFQLTHSLGGGTGSGMVTLLILKIREEYP-DRIMNTFSVVPSPKVSDTVVEPYNA-T 131
Query: 645 FSFINLVE 668
S LVE
Sbjct: 132 LSVHQLVE 139
>SB_48074| Best HMM Match : Tubulin (HMM E-Value=4.4e-27)
Length = 144
Score = 161 bits (390), Expect = 6e-40
Identities = 73/111 (65%), Positives = 89/111 (80%)
Frame = +2
Query: 242 SGGQDVPRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQXGAGNNWAKGHYTEGAELVD 421
+GG+ VPR+ILVDLEPGTMD+VR GP G +FRPDNFV Q GA NNWAKGHY+EGAEL+D
Sbjct: 11 TGGRYVPRSILVDLEPGTMDAVRGGPLGNMFRPDNFVNSQSGAANNWAKGHYSEGAELID 70
Query: 422 SVLDVVRKEAESCDLPPGIPTDTLARAGGPVSGMGXLLISKIREEYPDRIM 574
++ DV+RKEAE+CD G+ A GG SG+G L++SKIREEYPDRI+
Sbjct: 71 NIFDVLRKEAENCDCMQGVQL-IQALGGGTGSGLGTLILSKIREEYPDRIL 120
>SB_19437| Best HMM Match : Tubulin (HMM E-Value=0)
Length = 885
Score = 130 bits (314), Expect = 1e-30
Identities = 67/162 (41%), Positives = 92/162 (56%), Gaps = 2/162 (1%)
Frame = +2
Query: 80 MREIVHIQAGQCGNQIGAKFWEIISDEHGIDPTGAYHGDSDLQL--ERINVYYNEASGGQ 253
MRE + I GQ G QIG WE+ EHGI P G D + + N +++E G+
Sbjct: 1 MRECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGK 60
Query: 254 DVPRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQXGAGNNWAKGHYTEGAELVDSVLD 433
VPRA+ VDLEP +D VR+G + Q+F P+ V G+ A NN+A+GHYT G E+VD VLD
Sbjct: 61 HVPRAVFVDLEPTVVDEVRTGTYRQLFHPEQLVTGKEDAANNYARGHYTVGKEIVDLVLD 120
Query: 434 VVRKEAESCDLPPGIPTDTLARAGGPVSGMGXLLISKIREEY 559
+RK A+ C G + GG SG LL+ ++ +Y
Sbjct: 121 RIRKLADQCTGLQGF-LIFHSFGGGTGSGFSSLLMERLSVDY 161
Score = 128 bits (308), Expect = 5e-30
Identities = 65/161 (40%), Positives = 91/161 (56%), Gaps = 2/161 (1%)
Frame = +2
Query: 83 REIVHIQAGQCGNQIGAKFWEIISDEHGIDPTGAYHGDSDLQL--ERINVYYNEASGGQD 256
RE + I GQ G QIG WE+ EHGI P G D + + N +++E G+
Sbjct: 435 RECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGKH 494
Query: 257 VPRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQXGAGNNWAKGHYTEGAELVDSVLDV 436
VPRA+ VDLEP +D VR+G + Q+F P+ + G+ A NN+A+GHYT G E+VD VLD
Sbjct: 495 VPRAVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTVGKEIVDLVLDR 554
Query: 437 VRKEAESCDLPPGIPTDTLARAGGPVSGMGXLLISKIREEY 559
+RK A+ C G + GG SG LL+ ++ +Y
Sbjct: 555 IRKLADQCTGLQGF-LIFHSFGGGTGSGFSSLLMERLSVDY 594
>SB_2674| Best HMM Match : Tubulin (HMM E-Value=0)
Length = 1036
Score = 128 bits (310), Expect = 3e-30
Identities = 65/162 (40%), Positives = 92/162 (56%), Gaps = 2/162 (1%)
Frame = +2
Query: 80 MREIVHIQAGQCGNQIGAKFWEIISDEHGIDPTGAYHGDSDLQL--ERINVYYNEASGGQ 253
+RE + I GQ G QIG WE+ EHGI P G D + + N +++E G+
Sbjct: 586 VRECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGK 645
Query: 254 DVPRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQXGAGNNWAKGHYTEGAELVDSVLD 433
VPRA+ VDLEP +D VR+G + Q+F P+ + G+ A NN+A+GHYT G EL+D VLD
Sbjct: 646 HVPRAVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTVGKELIDLVLD 705
Query: 434 VVRKEAESCDLPPGIPTDTLARAGGPVSGMGXLLISKIREEY 559
+RK A+ C G + GG SG LL+ ++ +Y
Sbjct: 706 RIRKLADQCTGLQGF-LIFHSFGGGTGSGFSSLLMERLSVDY 746
Score = 127 bits (306), Expect = 9e-30
Identities = 64/161 (39%), Positives = 91/161 (56%), Gaps = 2/161 (1%)
Frame = +2
Query: 83 REIVHIQAGQCGNQIGAKFWEIISDEHGIDPTGAYHGDSDLQL--ERINVYYNEASGGQD 256
RE + + GQ G QIG WE+ EHGI P G D + + N +++E G+
Sbjct: 66 RECISVHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGKH 125
Query: 257 VPRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQXGAGNNWAKGHYTEGAELVDSVLDV 436
VPRA+ VDLEP +D VR+G + Q+F P+ + G+ A NN+A+GHYT G E+VD VLD
Sbjct: 126 VPRAVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIVDLVLDR 185
Query: 437 VRKEAESCDLPPGIPTDTLARAGGPVSGMGXLLISKIREEY 559
+RK A+ C G + GG SG LL+ ++ +Y
Sbjct: 186 IRKLADQCTGLQGF-LIFHSFGGGTGSGFSSLLMERLSVDY 225
Score = 62.5 bits (145), Expect = 3e-10
Identities = 30/77 (38%), Positives = 41/77 (53%), Gaps = 2/77 (2%)
Frame = +2
Query: 83 REIVHIQAGQCGNQIGAKFWEIISDEHGIDPTGAYHGDSDL--QLERINVYYNEASGGQD 256
RE + I GQ G QIG WE+ EHGI P G D + + N +++E G+
Sbjct: 514 RECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGKH 573
Query: 257 VPRAILVDLEPGTMDSV 307
VPRA+ VDLEP + +
Sbjct: 574 VPRAVFVDLEPTVRECI 590
>SB_34400| Best HMM Match : Tubulin (HMM E-Value=0)
Length = 380
Score = 126 bits (305), Expect = 1e-29
Identities = 64/161 (39%), Positives = 91/161 (56%), Gaps = 2/161 (1%)
Frame = +2
Query: 83 REIVHIQAGQCGNQIGAKFWEIISDEHGIDPTGAYHGDSDLQL--ERINVYYNEASGGQD 256
RE + I GQ G QIG WE+ EHGI P G D + + N +++E G+
Sbjct: 1 RECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGKH 60
Query: 257 VPRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQXGAGNNWAKGHYTEGAELVDSVLDV 436
VPRA+ VDLEP +D VR+G + Q+F P+ + G+ A NN+A+GHYT G E++D VLD
Sbjct: 61 VPRAVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTVGKEIIDLVLDR 120
Query: 437 VRKEAESCDLPPGIPTDTLARAGGPVSGMGXLLISKIREEY 559
+RK A+ C G + GG SG LL+ ++ +Y
Sbjct: 121 IRKLADQCTGLQGF-LIFHSFGGGTGSGFTSLLMERLSVDY 160
>SB_22192| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 452
Score = 126 bits (304), Expect = 2e-29
Identities = 62/162 (38%), Positives = 92/162 (56%), Gaps = 2/162 (1%)
Frame = +2
Query: 80 MREIVHIQAGQCGNQIGAKFWEIISDEHGIDPTGAYHGDSDLQL--ERINVYYNEASGGQ 253
MRE + + GQ G Q+G WE+ EHGI P G D + + N +++E G+
Sbjct: 1 MRECISVHVGQAGVQMGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGSGK 60
Query: 254 DVPRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQXGAGNNWAKGHYTEGAELVDSVLD 433
VPRA+ DLEP +D VR+G + Q+F P+ + G+ A NN+A+GHYT G E++D+VLD
Sbjct: 61 HVPRAVFCDLEPTVVDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTVGKEMIDTVLD 120
Query: 434 VVRKEAESCDLPPGIPTDTLARAGGPVSGMGXLLISKIREEY 559
+RK A+ C G + GG SG LL+ ++ +Y
Sbjct: 121 RLRKLADGCTGLQGF-LIFHSFGGGTGSGFSSLLMERLSVDY 161
>SB_22191| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 865
Score = 126 bits (304), Expect = 2e-29
Identities = 62/161 (38%), Positives = 91/161 (56%), Gaps = 2/161 (1%)
Frame = +2
Query: 83 REIVHIQAGQCGNQIGAKFWEIISDEHGIDPTGAYHGDSDLQL--ERINVYYNEASGGQD 256
RE V I GQ G Q+G WE+ EHGI P G D + + N +++E G+
Sbjct: 420 RECVSIHVGQAGVQMGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGKH 479
Query: 257 VPRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQXGAGNNWAKGHYTEGAELVDSVLDV 436
VPRA+ VDLEP +D +R+G + Q+F P+ + G+ A NN+A+GHYT G + +D+VLD
Sbjct: 480 VPRAVFVDLEPSVIDEIRTGTYRQLFHPEQLITGKEDAANNYARGHYTVGKDHIDNVLDR 539
Query: 437 VRKEAESCDLPPGIPTDTLARAGGPVSGMGXLLISKIREEY 559
+RK A+ C G + GG SG LL+ ++ +Y
Sbjct: 540 IRKLADQCSGLQGFLV-FHSFGGGTGSGFSALLLERLSVDY 579
Score = 107 bits (258), Expect = 6e-24
Identities = 54/147 (36%), Positives = 82/147 (55%), Gaps = 2/147 (1%)
Frame = +2
Query: 125 IGAKFWEIISDEHGIDPTGAYHGDSDLQL--ERINVYYNEASGGQDVPRAILVDLEPGTM 298
+G WE+ EHGI P G D + + N +++E G+ VPRA+ DLEP +
Sbjct: 1 MGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGKHVPRAVFCDLEPTVV 60
Query: 299 DSVRSGPFGQIFRPDNFVFGQXGAGNNWAKGHYTEGAELVDSVLDVVRKEAESCDLPPGI 478
D VR+G + Q+F P+ + G+ A NN+A+GHYT G +L++ VLD +RK A+ C G
Sbjct: 61 DEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTVGKQLIEIVLDRLRKLADQCTGLQGF 120
Query: 479 PTDTLARAGGPVSGMGXLLISKIREEY 559
+ GG SG LL+ ++ +Y
Sbjct: 121 -LIFHSFGGGTGSGFSSLLMERLSVDY 146
>SB_2003| Best HMM Match : Tubulin (HMM E-Value=0)
Length = 451
Score = 126 bits (304), Expect = 2e-29
Identities = 64/162 (39%), Positives = 91/162 (56%), Gaps = 2/162 (1%)
Frame = +2
Query: 80 MREIVHIQAGQCGNQIGAKFWEIISDEHGIDPTGAYHGDSDLQL--ERINVYYNEASGGQ 253
MRE + I GQ G Q+G WE+ EHGI P G D + + N +++E G+
Sbjct: 1 MRECISIHVGQAGVQMGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGK 60
Query: 254 DVPRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQXGAGNNWAKGHYTEGAELVDSVLD 433
VPRA+ VDLEP +D VR+G + Q+F P+ + G+ A NN+A+GHYT G E++D VLD
Sbjct: 61 HVPRAVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIIDLVLD 120
Query: 434 VVRKEAESCDLPPGIPTDTLARAGGPVSGMGXLLISKIREEY 559
RK A+ C G + GG SG LL+ ++ +Y
Sbjct: 121 RCRKLADQCTGLQGF-LIFHSFGGGTGSGFASLLMERLSVDY 161
>SB_22193| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1231
Score = 123 bits (297), Expect = 1e-28
Identities = 61/161 (37%), Positives = 90/161 (55%), Gaps = 2/161 (1%)
Frame = +2
Query: 83 REIVHIQAGQCGNQIGAKFWEIISDEHGIDPTGAYHGDSDLQL--ERINVYYNEASGGQD 256
RE + + GQ G Q+G WE+ EHGI P G D + + N +++E G+
Sbjct: 806 RECISVHVGQAGVQMGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGKH 865
Query: 257 VPRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQXGAGNNWAKGHYTEGAELVDSVLDV 436
VPRA+ DLEP +D VR+G + Q+F P+ + G+ A NN+A+GHYT G E++D VLD
Sbjct: 866 VPRAVFADLEPTVVDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTVGKEMIDLVLDR 925
Query: 437 VRKEAESCDLPPGIPTDTLARAGGPVSGMGXLLISKIREEY 559
+RK A+ C G + GG SG LL+ ++ +Y
Sbjct: 926 IRKLADQCTGLQGF-LIFHSFGGGTGSGFTSLLMERLSVDY 965
Score = 123 bits (296), Expect = 2e-28
Identities = 64/161 (39%), Positives = 89/161 (55%), Gaps = 2/161 (1%)
Frame = +2
Query: 83 REIVHIQAGQCGNQIGAKFWEIISDEHGIDPTGAYHGDSDLQL--ERINVYYNEASGGQD 256
RE + I GQ G QIG WE+ EHGI P G D + + N ++ E G+
Sbjct: 373 RECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDAFNTFFAETGAGKH 432
Query: 257 VPRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQXGAGNNWAKGHYTEGAELVDSVLDV 436
VPRA+ VDLEP +D VR+G + Q+F P+ + G+ A NN+A+GHYT G E +D VLD
Sbjct: 433 VPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTVGKEQIDIVLDR 492
Query: 437 VRKEAESCDLPPGIPTDTLARAGGPVSGMGXLLISKIREEY 559
+RK A+ C G + GG SG LL+ ++ +Y
Sbjct: 493 LRKLADGCTGLQGF-LIFHSFGGGTGSGFTSLLMERLSVDY 532
>SB_48961| Best HMM Match : Tubulin (HMM E-Value=0)
Length = 536
Score = 98.7 bits (235), Expect = 4e-21
Identities = 59/162 (36%), Positives = 81/162 (50%), Gaps = 2/162 (1%)
Frame = +2
Query: 80 MREIVHIQAGQCGNQIGAKFWEIISDEHGIDPTGAYHGDSDLQL--ERINVYYNEASGGQ 253
MRE + I GQ G QIG WE+ EHGI P G D + N +++E G+
Sbjct: 1 MRECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTQGGGDDSFNTFFSETGAGK 60
Query: 254 DVPRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQXGAGNNWAKGHYTEGAELVDSVLD 433
VPRA+ VDLEP + P+ + G+ A NN+A+GHYT G + VD VLD
Sbjct: 61 HVPRAVFVDLEPTVV----------ALSPEQLITGKEDAANNYARGHYTIGKQQVDQVLD 110
Query: 434 VVRKEAESCDLPPGIPTDTLARAGGPVSGMGXLLISKIREEY 559
+RK A+ C G + GG SG LL+ ++ +Y
Sbjct: 111 RLRKLADQCSGLQGF-FIFHSFGGGTGSGFSSLLMERLSVDY 151
>SB_22190| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 417
Score = 93.5 bits (222), Expect = 1e-19
Identities = 44/116 (37%), Positives = 67/116 (57%)
Frame = +2
Query: 212 ERINVYYNEASGGQDVPRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQXGAGNNWAKG 391
+ N ++ E G+ VPRA+ VDLEP +D +R+G + Q+F P+ + G+ A NN+A+G
Sbjct: 12 DSFNTFFAETGAGKHVPRAVFVDLEPTVIDEIRTGTYRQLFHPEQLLSGKEDAANNYARG 71
Query: 392 HYTEGAELVDSVLDVVRKEAESCDLPPGIPTDTLARAGGPVSGMGXLLISKIREEY 559
HYT G E +D LD +RK A+ C G + GG SG LL+ ++ +Y
Sbjct: 72 HYTVGKEHIDLALDRIRKLADQCTGLQGF-LIFHSFGGGTGSGFSSLLMERLSVDY 126
>SB_25311| Best HMM Match : Tubulin (HMM E-Value=0)
Length = 629
Score = 87.4 bits (207), Expect = 9e-18
Identities = 42/72 (58%), Positives = 51/72 (70%)
Frame = +2
Query: 359 QXGAGNNWAKGHYTEGAELVDSVLDVVRKEAESCDLPPGIPTDTLARAGGPVSGMGXLLI 538
Q A NNWAKG YTEGAEL+DS +D +RK AE+CD G + GG SG+G LL+
Sbjct: 2 QNSAANNWAKGFYTEGAELMDSGMDCIRKLAENCDTVQGFQI-AHSLGGGTGSGLGSLLL 60
Query: 539 SKIREEYPDRIM 574
SKIREEYPDR++
Sbjct: 61 SKIREEYPDRLV 72
>SB_19567| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1383
Score = 87.4 bits (207), Expect = 9e-18
Identities = 42/109 (38%), Positives = 65/109 (59%)
Frame = +2
Query: 233 NEASGGQDVPRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQXGAGNNWAKGHYTEGAE 412
+EA+ G+ VPRA+LVDLEP +D VR+G + ++ P+ + G+ A NN+A+GHYT G E
Sbjct: 965 SEAAAGKYVPRAVLVDLEPTVIDEVRTGMYRYLYHPEQMISGKEDAANNYARGHYTIGKE 1024
Query: 413 LVDSVLDVVRKEAESCDLPPGIPTDTLARAGGPVSGMGXLLISKIREEY 559
+V+ V+D +RK + C G + GG SG L+ + +Y
Sbjct: 1025 MVEVVMDKIRKMTDQCSGLQGF-LIFHSFGGGTGSGFASLITEHLSVDY 1072
>SB_47142| Best HMM Match : Tubulin (HMM E-Value=5.32493e-44)
Length = 474
Score = 76.6 bits (180), Expect = 2e-14
Identities = 51/168 (30%), Positives = 83/168 (49%), Gaps = 9/168 (5%)
Frame = +2
Query: 89 IVHIQAGQCGNQIGAKFWEIISDE------HGIDPTGAYHGDSDLQLERINVYYNEASGG 250
IV +Q GQCGNQIG + +++I ++ + ++ + E + ++ +
Sbjct: 3 IVTLQLGQCGNQIGRELFDLIVEDATKLNSRFLCKELTTRSCTEYEEESLARFFTRENDD 62
Query: 251 QDVPRAILVDLEPGTMDSVRS--GPFGQIFRPDNFVFGQX-GAGNNWAKGHYTEGAELVD 421
RA+ +D+E + S G P F Q G+GNNWA G G + +D
Sbjct: 63 ILNARAVSIDMESKVISQTLSEASKSGTWRYPKGQQFSQKRGSGNNWAHGFSEHGPKSID 122
Query: 422 SVLDVVRKEAESCDLPPGIPTDTLARAGGPVSGMGXLLISKIREEYPD 565
VLD+V++E E CD G T L+ AGG SG+G + + +R+ YP+
Sbjct: 123 KVLDLVQREVEKCDRLDGFLT-LLSLAGGTGSGVGAFVTNSLRDFYPN 169
>SB_37573| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 389
Score = 70.9 bits (166), Expect = 9e-13
Identities = 35/87 (40%), Positives = 51/87 (58%)
Frame = +2
Query: 299 DSVRSGPFGQIFRPDNFVFGQXGAGNNWAKGHYTEGAELVDSVLDVVRKEAESCDLPPGI 478
D VR+G + Q+F P+ + G+ A NN+A+GHYT G EL+D VLD +RK A+ C G
Sbjct: 13 DEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTVGKELIDLVLDRIRKLADQCTGLQGF 72
Query: 479 PTDTLARAGGPVSGMGXLLISKIREEY 559
+ GG SG LL+ ++ +Y
Sbjct: 73 -LIFHSFGGGTGSGFSSLLMERLSVDY 98
>SB_51156| Best HMM Match : Tubulin_C (HMM E-Value=0)
Length = 377
Score = 68.5 bits (160), Expect = 5e-12
Identities = 34/85 (40%), Positives = 50/85 (58%)
Frame = +2
Query: 305 VRSGPFGQIFRPDNFVFGQXGAGNNWAKGHYTEGAELVDSVLDVVRKEAESCDLPPGIPT 484
VR+G + Q+F P+ + G+ A NN+A+GHYT G EL+D VLD +RK A+ C G
Sbjct: 3 VRTGTYRQLFHPEQLITGKEDAANNYARGHYTVGKELIDLVLDRIRKLADQCTGLQGF-L 61
Query: 485 DTLARAGGPVSGMGXLLISKIREEY 559
+ GG SG LL+ ++ +Y
Sbjct: 62 IFHSFGGGTGSGFSSLLMERLSVDY 86
>SB_28561| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 94
Score = 67.7 bits (158), Expect = 8e-12
Identities = 31/79 (39%), Positives = 44/79 (55%), Gaps = 2/79 (2%)
Frame = +2
Query: 80 MREIVHIQAGQCGNQIGAKFWEIISDEHGIDPTGAYHGDSDLQ--LERINVYYNEASGGQ 253
MRE + + GQ G QIG WE+ EHGI P G D + + N +++E GG+
Sbjct: 1 MRECISVHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIDGGDDSFNTFFSETGGGK 60
Query: 254 DVPRAILVDLEPGTMDSVR 310
VPRA+ VDLEP + ++
Sbjct: 61 HVPRAVFVDLEPSVVGRMK 79
>SB_5512| Best HMM Match : Tubulin (HMM E-Value=0)
Length = 365
Score = 62.9 bits (146), Expect = 2e-10
Identities = 31/85 (36%), Positives = 48/85 (56%)
Frame = +2
Query: 305 VRSGPFGQIFRPDNFVFGQXGAGNNWAKGHYTEGAELVDSVLDVVRKEAESCDLPPGIPT 484
+R+G + Q+F P+ + G+ A NN+A+GHYT G E +D LD +RK A+ C G
Sbjct: 3 IRTGTYRQLFHPEQLLSGKEDAANNYARGHYTVGKEHIDLALDRIRKLADQCTGLQGF-L 61
Query: 485 DTLARAGGPVSGMGXLLISKIREEY 559
+ GG SG LL+ ++ +Y
Sbjct: 62 IFHSFGGGTGSGFSSLLMERLSVDY 86
>SB_35594| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 50
Score = 59.3 bits (137), Expect = 3e-09
Identities = 24/47 (51%), Positives = 34/47 (72%)
Frame = +2
Query: 305 VRSGPFGQIFRPDNFVFGQXGAGNNWAKGHYTEGAELVDSVLDVVRK 445
VR+G + Q+F P+ + G+ A NN+A+GHYT G EL+D VLD +RK
Sbjct: 3 VRTGTYRQLFHPEQLITGKEDAANNYARGHYTVGKELIDLVLDRIRK 49
>SB_37976| Best HMM Match : Tubulin (HMM E-Value=4.5e-18)
Length = 553
Score = 54.0 bits (124), Expect = 1e-07
Identities = 52/176 (29%), Positives = 76/176 (43%), Gaps = 8/176 (4%)
Frame = +2
Query: 98 IQAGQCGNQIGAKFWEIISDEHGIDPTGAYHGDSDLQLERINVYYNEASGGQDVPRAILV 277
+ GQCGNQIG + ++ + P H D L R + V
Sbjct: 6 LPVGQCGNQIGHELMTLVEKQCEGKPLS--HRDGKL-------------------RCVCV 44
Query: 278 DLEPGTMDSVR--SGPFGQIFRPDNFVFGQXGAGNNWAKGHYTE-----GAELVDSVLDV 436
D E + S R G GQ R N + G+ G GNN+A G++ G L+ +D
Sbjct: 45 DSESKVIASNRRSDGVHGQN-RDSNIIAGRRGRGNNFALGYHGNSIDEGGTSLLHMTMDA 103
Query: 437 VRKEAESCDLPPG-IPTDTLARAGGPVSGMGXLLISKIREEYPDRIMKHIFSCTIT 601
+RKE E CD G I +L GG SG+G L+ + + YP + H+ S ++
Sbjct: 104 MRKEVERCDSFAGTIVMHSL--TGGTGSGLGARLVETLSDAYP---LAHVMSVAVS 154
>SB_47795| Best HMM Match : Tubulin_C (HMM E-Value=0.24)
Length = 149
Score = 53.6 bits (123), Expect = 1e-07
Identities = 25/66 (37%), Positives = 37/66 (56%), Gaps = 1/66 (1%)
Frame = +2
Query: 305 VRSGPFGQIFRPDNFVFGQXGAGNNWAKGHYTEGAELVDSVLDVVRK-EAESCDLPPGIP 481
VR G + +F PD + G+ A NN+A+GHYT G E +D L+ +RK + P +P
Sbjct: 3 VRMGTYRDLFHPDQLITGKEDAANNYARGHYTVGKEHIDLTLEKIRKLVGINYQQPTAVP 62
Query: 482 TDTLAR 499
LA+
Sbjct: 63 GGDLAK 68
>SB_2586| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 38
Score = 44.8 bits (101), Expect = 6e-05
Identities = 18/35 (51%), Positives = 26/35 (74%), Gaps = 1/35 (2%)
Frame = +2
Query: 137 FWEIISDEHGIDPTGAYHG-DSDLQLERINVYYNE 238
FWE+I++EHGIDP G S +Q +R+NVY++E
Sbjct: 1 FWEVIAEEHGIDPDGQCTAVQSKIQTDRLNVYFDE 35
>SB_17880| Best HMM Match : Tubulin_C (HMM E-Value=0)
Length = 375
Score = 44.0 bits (99), Expect = 1e-04
Identities = 21/49 (42%), Positives = 30/49 (61%)
Frame = +2
Query: 437 VRKEAESCDLPPGIPTDTLARAGGPVSGMGXLLISKIREEYPDRIMKHI 583
+RKEAE CD G + GG SG+G L++ ++EEYPDRI+ +
Sbjct: 1 MRKEAEDCDAIQGFQL-LHSLGGGTGSGLGTLILYHLQEEYPDRILSSV 48
>SB_42897| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 602
Score = 43.6 bits (98), Expect = 1e-04
Identities = 24/62 (38%), Positives = 33/62 (53%), Gaps = 4/62 (6%)
Frame = +2
Query: 80 MREIVHIQAGQCGNQIGAKFWEIISDEHGIDPTGAYHGDSDLQLER----INVYYNEASG 247
MRE + I GQ G QIG WE+ EHGI P G H SD +R + +++E +
Sbjct: 196 MRECLSIHVGQAGVQIGNACWELYCLEHGIQPDG--HMPSDQSADRCDDSFSTFFSETAS 253
Query: 248 GQ 253
G+
Sbjct: 254 GK 255
>SB_40336| Best HMM Match : Tubulin_C (HMM E-Value=1.3e-32)
Length = 488
Score = 40.7 bits (91), Expect = 0.001
Identities = 26/103 (25%), Positives = 49/103 (47%), Gaps = 2/103 (1%)
Frame = +2
Query: 263 RAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQXGAGNNWAKGHYTEGAELVDSVLDVVR 442
RA+L+D+E G ++++ GP +F + G GNNW + + + VV+
Sbjct: 76 RAVLIDMEEGVVNNILKGPLHDVFDCQQLITDVSGCGNNWYT-LLCKCFAIRKDIFVVVQ 134
Query: 443 --KEAESCDLPPGIPTDTLARAGGPVSGMGXLLISKIREEYPD 565
KE C + + + G SG+G +++ + ++YPD
Sbjct: 135 SFKEWTLCFEAKEMYLEDQNKGTG--SGVGTYVLNLLHDDYPD 175
>SB_25191| Best HMM Match : zf-B_box (HMM E-Value=1.1)
Length = 282
Score = 31.5 bits (68), Expect = 0.64
Identities = 17/42 (40%), Positives = 22/42 (52%)
Frame = -3
Query: 582 MCFIILSGYSSLILEMRRXPIPETGPPARASVSVGIPGGKSH 457
+C + + +S L RR PIP TGP V +PGGK H
Sbjct: 248 LCRVCDANHSMLSCAKRRFPIPNTGP-------VVVPGGKRH 282
>SB_43794| Best HMM Match : zf-B_box (HMM E-Value=6)
Length = 320
Score = 30.7 bits (66), Expect = 1.1
Identities = 16/44 (36%), Positives = 24/44 (54%)
Frame = -3
Query: 588 LNMCFIILSGYSSLILEMRRXPIPETGPPARASVSVGIPGGKSH 457
+++C + + +S L RR PIP TGP V +PGG+ H
Sbjct: 284 VHLCRVCDANHSMLSCAKRRFPIPNTGP-------VVVPGGERH 320
>SB_37173| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 336
Score = 29.9 bits (64), Expect = 2.0
Identities = 16/42 (38%), Positives = 22/42 (52%)
Frame = -3
Query: 582 MCFIILSGYSSLILEMRRXPIPETGPPARASVSVGIPGGKSH 457
+C + + +S L RR PIP TGP V +PGG+ H
Sbjct: 302 LCRVCDANHSMLSCAKRRFPIPNTGP-------VVVPGGERH 336
>SB_21701| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1906
Score = 29.5 bits (63), Expect = 2.6
Identities = 12/52 (23%), Positives = 27/52 (51%)
Frame = -3
Query: 555 SSLILEMRRXPIPETGPPARASVSVGIPGGKSHDSASFRTTSKTESTSSAPS 400
S L E+ + P+P + PP + + + + + +S ++T + +ST + S
Sbjct: 237 SDLESELEKPPLPSSPPPLDKELEINVKNRTTLEKSSEKSTKQHDSTQTTSS 288
>SB_49423| Best HMM Match : Dicty_CAD (HMM E-Value=6.4)
Length = 384
Score = 29.5 bits (63), Expect = 2.6
Identities = 19/58 (32%), Positives = 29/58 (50%)
Frame = -2
Query: 457 RFRFLSNDV*N*IDELSTLRVVSLGPVVTGAXLSEDEVVRTEDLSERSRADRVHGAGL 284
R R +S V I +L V++L PV+ G +++D V + RSR R H G+
Sbjct: 210 RGRDISAGVYQEIRDLGGAGVIALKPVMRGPDINDDGSVCQKRRPNRSRCPRRHRCGI 267
>SB_5805| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 343
Score = 28.7 bits (61), Expect = 4.5
Identities = 17/53 (32%), Positives = 24/53 (45%), Gaps = 3/53 (5%)
Frame = +2
Query: 449 AESCDLPPGIPTDTL---ARAGGPVSGMGXLLISKIREEYPDRIMKHIFSCTI 598
A C PP + +L R P++ M L+ IR P +M+H CTI
Sbjct: 25 ATRCHAPPAVMRHSLLCATRCYAPLAVMRHSLLCAIRCYAPLAVMRHSLECTI 77
>SB_1799| Best HMM Match : zf-C2H2 (HMM E-Value=0)
Length = 907
Score = 28.7 bits (61), Expect = 4.5
Identities = 14/47 (29%), Positives = 19/47 (40%)
Frame = +2
Query: 149 ISDEHGIDPTGAYHGDSDLQLERINVYYNEASGGQDVPRAILVDLEP 289
+ D G GD L L + +Y E G + V R + LEP
Sbjct: 792 VDDVRGCFQEALKEGDGQLTLNSLIEHYKELEGSEKVARELFAMLEP 838
>SB_9489| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 159
Score = 27.9 bits (59), Expect = 7.9
Identities = 15/35 (42%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
Frame = -2
Query: 235 IVVYIDALQLQVRVPM-VSTGGVDAVLVGDDLPEL 134
I VY DA++LQV P+ G+D + V D EL
Sbjct: 48 ITVYADAVELQVTYPLRAPLRGIDLITVYADAVEL 82
>SB_14887| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 876
Score = 27.9 bits (59), Expect = 7.9
Identities = 12/28 (42%), Positives = 14/28 (50%)
Frame = -3
Query: 540 EMRRXPIPETGPPARASVSVGIPGGKSH 457
E R +P T PP R + IPGG H
Sbjct: 734 ESRALSVPPTVPPVRTDTADVIPGGVPH 761
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,535,939
Number of Sequences: 59808
Number of extensions: 388443
Number of successful extensions: 1161
Number of sequences better than 10.0: 38
Number of HSP's better than 10.0 without gapping: 1023
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1124
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1729817375
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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