Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV060428.seq
(668 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g75780.1 68414.m08801 tubulin beta-1 chain (TUB1) nearly iden... 283 6e-77
At5g12250.1 68418.m01439 tubulin beta-6 chain (TUB6) nearly iden... 280 5e-76
At1g20010.1 68414.m02506 tubulin beta-5 chain (TUB5) nearly iden... 280 5e-76
At5g62700.1 68418.m07868 tubulin beta-2/beta-3 chain (TUB3) near... 280 7e-76
At5g62690.1 68418.m07867 tubulin beta-2/beta-3 chain (TUB2) near... 280 7e-76
At5g23860.1 68418.m02801 tubulin beta-8 chain (TUB8) (TUBB8) ide... 277 4e-75
At4g20890.1 68417.m03029 tubulin beta-9 chain (TUB9) nearly iden... 277 4e-75
At2g29550.1 68415.m03589 tubulin beta-7 chain (TUB7) identical t... 276 8e-75
At5g44340.1 68418.m05429 tubulin beta-4 chain (TUB4) nearly iden... 276 1e-74
At5g19780.1 68418.m02351 tubulin alpha-3/alpha-5 chain (TUA5) ne... 138 4e-33
At5g19770.1 68418.m02350 tubulin alpha-3/alpha-5 chain (TUA3) ne... 138 4e-33
At1g64740.1 68414.m07340 tubulin alpha-1 chain (TUA1) nearly ide... 137 5e-33
At4g14960.2 68417.m02299 tubulin alpha-6 chain (TUA6) nearly ide... 134 4e-32
At4g14960.1 68417.m02298 tubulin alpha-6 chain (TUA6) nearly ide... 134 4e-32
At1g50010.1 68414.m05612 tubulin alpha-2/alpha-4 chain (TUA2) id... 132 2e-31
At1g04820.1 68414.m00478 tubulin alpha-2/alpha-4 chain (TUA4) ne... 132 2e-31
At5g05620.1 68418.m00612 tubulin gamma-2 chain / gamma-2 tubulin... 114 4e-26
At3g61650.1 68416.m06909 tubulin gamma-1 chain / gamma-1 tubulin... 114 6e-26
At4g37190.1 68417.m05265 expressed protein 31 0.52
At1g21850.1 68414.m02735 multi-copper oxidase type I family prot... 29 2.8
At2g45300.1 68415.m05638 3-phosphoshikimate 1-carboxyvinyltransf... 29 3.7
At1g09530.2 68414.m01069 phytochrome interacting factor 3 (PIF3)... 28 4.9
At1g09530.1 68414.m01068 phytochrome interacting factor 3 (PIF3)... 28 4.9
At5g26110.1 68418.m03106 expressed protein 27 8.5
At3g10900.1 68416.m01312 (1-4)-beta-mannan endohydrolase, putati... 27 8.5
At1g48860.2 68414.m05470 3-phosphoshikimate 1-carboxyvinyltransf... 27 8.5
At1g48860.1 68414.m05471 3-phosphoshikimate 1-carboxyvinyltransf... 27 8.5
>At1g75780.1 68414.m08801 tubulin beta-1 chain (TUB1) nearly
identical to SP|P12411 Tubulin beta-1 chain {Arabidopsis
thaliana}
Length = 447
Score = 283 bits (695), Expect = 6e-77
Identities = 130/166 (78%), Positives = 146/166 (87%), Gaps = 1/166 (0%)
Frame = +2
Query: 80 MREIVHIQAGQCGNQIGAKFWEIISDEHGIDPTGAYHGDS-DLQLERINVYYNEASGGQD 256
MREI+H+Q GQCGNQIG+KFWE+I DEHG+DPTG Y+GDS DLQLERINVYYNEASGG+
Sbjct: 1 MREILHVQGGQCGNQIGSKFWEVICDEHGVDPTGRYNGDSADLQLERINVYYNEASGGRY 60
Query: 257 VPRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQXGAGNNWAKGHYTEGAELVDSVLDV 436
VPRA+L+DLEPGTMDS+RSGP+GQIFRPDNFVFGQ GAGNNWAKGHYTEGAEL+D+VLDV
Sbjct: 61 VPRAVLMDLEPGTMDSIRSGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDAVLDV 120
Query: 437 VRKEAESCDLPPGIPTDTLARAGGPVSGMGXLLISKIREEYPDRIM 574
VRKEAE+CD G + GG SGMG LLISKIREEYPDR+M
Sbjct: 121 VRKEAENCDCLQGFQV-CHSLGGGTGSGMGTLLISKIREEYPDRMM 165
Score = 34.7 bits (76), Expect = 0.056
Identities = 27/68 (39%), Positives = 30/68 (44%)
Frame = +3
Query: 465 CLQGFQLTHSLGRAARFPVWXXXXXXXXXXXTLTE**NTYSVVPSPKVSDTVSRTVQRHT 644
CLQGFQ+ HSLG + T+SV PSPKVSDTV T
Sbjct: 130 CLQGFQVCHSLGGGTGSGMGTLLISKIREEYP-DRMMLTFSVFPSPKVSDTVVEPYNA-T 187
Query: 645 FSFINLVE 668
S LVE
Sbjct: 188 LSVHQLVE 195
>At5g12250.1 68418.m01439 tubulin beta-6 chain (TUB6) nearly
identical to SP|P29514 Tubulin beta-6 chain {Arabidopsis
thaliana}
Length = 449
Score = 280 bits (687), Expect = 5e-76
Identities = 129/165 (78%), Positives = 144/165 (87%)
Frame = +2
Query: 80 MREIVHIQAGQCGNQIGAKFWEIISDEHGIDPTGAYHGDSDLQLERINVYYNEASGGQDV 259
MREI+HIQ GQCGNQIG+KFWE++ DEHGIDPTG Y G+SDLQLER+NVYYNEAS G+ V
Sbjct: 1 MREILHIQGGQCGNQIGSKFWEVVCDEHGIDPTGRYVGNSDLQLERVNVYYNEASCGRYV 60
Query: 260 PRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQXGAGNNWAKGHYTEGAELVDSVLDVV 439
PRAIL+DLEPGTMDSVR+GP+GQIFRPDNFVFGQ GAGNNWAKGHYTEGAEL+D+VLDVV
Sbjct: 61 PRAILMDLEPGTMDSVRTGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDAVLDVV 120
Query: 440 RKEAESCDLPPGIPTDTLARAGGPVSGMGXLLISKIREEYPDRIM 574
RKEAE+CD G + GG SGMG LLISKIREEYPDR+M
Sbjct: 121 RKEAENCDCLQGFQV-CHSLGGGTGSGMGTLLISKIREEYPDRMM 164
Score = 34.7 bits (76), Expect = 0.056
Identities = 27/68 (39%), Positives = 30/68 (44%)
Frame = +3
Query: 465 CLQGFQLTHSLGRAARFPVWXXXXXXXXXXXTLTE**NTYSVVPSPKVSDTVSRTVQRHT 644
CLQGFQ+ HSLG + T+SV PSPKVSDTV T
Sbjct: 129 CLQGFQVCHSLGGGTGSGMGTLLISKIREEYP-DRMMLTFSVFPSPKVSDTVVEPYNA-T 186
Query: 645 FSFINLVE 668
S LVE
Sbjct: 187 LSVHQLVE 194
>At1g20010.1 68414.m02506 tubulin beta-5 chain (TUB5) nearly
identical to SP|P29513 Tubulin beta-5 chain {Arabidopsis
thaliana}
Length = 449
Score = 280 bits (687), Expect = 5e-76
Identities = 131/166 (78%), Positives = 144/166 (86%), Gaps = 1/166 (0%)
Frame = +2
Query: 80 MREIVHIQAGQCGNQIGAKFWEIISDEHGIDPTGAYHGDS-DLQLERINVYYNEASGGQD 256
MREI+HIQ GQCGNQIG+KFWE+I DEHGID TG Y GD+ DLQLERINVYYNEASGG+
Sbjct: 1 MREILHIQGGQCGNQIGSKFWEVICDEHGIDSTGRYSGDTADLQLERINVYYNEASGGRY 60
Query: 257 VPRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQXGAGNNWAKGHYTEGAELVDSVLDV 436
VPRA+L+DLEPGTMDS+RSGPFGQIFRPDNFVFGQ GAGNNWAKGHYTEGAEL+D+VLDV
Sbjct: 61 VPRAVLMDLEPGTMDSIRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDAVLDV 120
Query: 437 VRKEAESCDLPPGIPTDTLARAGGPVSGMGXLLISKIREEYPDRIM 574
VRKEAE+CD G + GG SGMG LLISKIREEYPDR+M
Sbjct: 121 VRKEAENCDCLQGFQV-CHSLGGGTGSGMGTLLISKIREEYPDRMM 165
Score = 34.7 bits (76), Expect = 0.056
Identities = 27/68 (39%), Positives = 30/68 (44%)
Frame = +3
Query: 465 CLQGFQLTHSLGRAARFPVWXXXXXXXXXXXTLTE**NTYSVVPSPKVSDTVSRTVQRHT 644
CLQGFQ+ HSLG + T+SV PSPKVSDTV T
Sbjct: 130 CLQGFQVCHSLGGGTGSGMGTLLISKIREEYP-DRMMLTFSVFPSPKVSDTVVEPYNA-T 187
Query: 645 FSFINLVE 668
S LVE
Sbjct: 188 LSVHQLVE 195
>At5g62700.1 68418.m07868 tubulin beta-2/beta-3 chain (TUB3) nearly
identical to SP|P29512 Tubulin beta-2/beta-3 chain
{Arabidopsis thaliana}
Length = 450
Score = 280 bits (686), Expect = 7e-76
Identities = 130/165 (78%), Positives = 142/165 (86%)
Frame = +2
Query: 80 MREIVHIQAGQCGNQIGAKFWEIISDEHGIDPTGAYHGDSDLQLERINVYYNEASGGQDV 259
MREI+HIQ GQCGNQIGAKFWE++ EHGIDPTG Y GDSDLQLERINVYYNEAS G+ V
Sbjct: 1 MREILHIQGGQCGNQIGAKFWEVVCAEHGIDPTGRYTGDSDLQLERINVYYNEASCGRFV 60
Query: 260 PRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQXGAGNNWAKGHYTEGAELVDSVLDVV 439
PRA+L+DLEPGTMDS+RSGP+GQ FRPDNFVFGQ GAGNNWAKGHYTEGAEL+DSVLDVV
Sbjct: 61 PRAVLMDLEPGTMDSLRSGPYGQTFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVV 120
Query: 440 RKEAESCDLPPGIPTDTLARAGGPVSGMGXLLISKIREEYPDRIM 574
RKEAE+CD G + GG SGMG LLISKIREEYPDR+M
Sbjct: 121 RKEAENCDCLQGFQV-CHSLGGGTGSGMGTLLISKIREEYPDRMM 164
Score = 34.7 bits (76), Expect = 0.056
Identities = 27/68 (39%), Positives = 30/68 (44%)
Frame = +3
Query: 465 CLQGFQLTHSLGRAARFPVWXXXXXXXXXXXTLTE**NTYSVVPSPKVSDTVSRTVQRHT 644
CLQGFQ+ HSLG + T+SV PSPKVSDTV T
Sbjct: 129 CLQGFQVCHSLGGGTGSGMGTLLISKIREEYP-DRMMLTFSVFPSPKVSDTVVEPYNA-T 186
Query: 645 FSFINLVE 668
S LVE
Sbjct: 187 LSVHQLVE 194
>At5g62690.1 68418.m07867 tubulin beta-2/beta-3 chain (TUB2) nearly
identical to SP|P29512 Tubulin beta-2/beta-3 chain
{Arabidopsis thaliana}
Length = 450
Score = 280 bits (686), Expect = 7e-76
Identities = 130/165 (78%), Positives = 142/165 (86%)
Frame = +2
Query: 80 MREIVHIQAGQCGNQIGAKFWEIISDEHGIDPTGAYHGDSDLQLERINVYYNEASGGQDV 259
MREI+HIQ GQCGNQIGAKFWE++ EHGIDPTG Y GDSDLQLERINVYYNEAS G+ V
Sbjct: 1 MREILHIQGGQCGNQIGAKFWEVVCAEHGIDPTGRYTGDSDLQLERINVYYNEASCGRFV 60
Query: 260 PRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQXGAGNNWAKGHYTEGAELVDSVLDVV 439
PRA+L+DLEPGTMDS+RSGP+GQ FRPDNFVFGQ GAGNNWAKGHYTEGAEL+DSVLDVV
Sbjct: 61 PRAVLMDLEPGTMDSLRSGPYGQTFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVV 120
Query: 440 RKEAESCDLPPGIPTDTLARAGGPVSGMGXLLISKIREEYPDRIM 574
RKEAE+CD G + GG SGMG LLISKIREEYPDR+M
Sbjct: 121 RKEAENCDCLQGFQV-CHSLGGGTGSGMGTLLISKIREEYPDRMM 164
Score = 34.7 bits (76), Expect = 0.056
Identities = 27/68 (39%), Positives = 30/68 (44%)
Frame = +3
Query: 465 CLQGFQLTHSLGRAARFPVWXXXXXXXXXXXTLTE**NTYSVVPSPKVSDTVSRTVQRHT 644
CLQGFQ+ HSLG + T+SV PSPKVSDTV T
Sbjct: 129 CLQGFQVCHSLGGGTGSGMGTLLISKIREEYP-DRMMLTFSVFPSPKVSDTVVEPYNA-T 186
Query: 645 FSFINLVE 668
S LVE
Sbjct: 187 LSVHQLVE 194
>At5g23860.1 68418.m02801 tubulin beta-8 chain (TUB8) (TUBB8)
identical to SP|P29516 Tubulin beta-8 chain {Arabidopsis
thaliana}; supporting cDNA gi|15451225|gb|AY054693.1|
Length = 449
Score = 277 bits (680), Expect = 4e-75
Identities = 128/165 (77%), Positives = 142/165 (86%)
Frame = +2
Query: 80 MREIVHIQAGQCGNQIGAKFWEIISDEHGIDPTGAYHGDSDLQLERINVYYNEASGGQDV 259
MREI+HIQ GQCGNQIGAKFWE++ EHGID TG Y G++DLQLER+NVYYNEAS G+ V
Sbjct: 1 MREILHIQGGQCGNQIGAKFWEVVCAEHGIDSTGRYQGENDLQLERVNVYYNEASCGRFV 60
Query: 260 PRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQXGAGNNWAKGHYTEGAELVDSVLDVV 439
PRA+L+DLEPGTMDSVRSGP+GQIFRPDNFVFGQ GAGNNWAKGHYTEGAEL+DSVLDVV
Sbjct: 61 PRAVLMDLEPGTMDSVRSGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVV 120
Query: 440 RKEAESCDLPPGIPTDTLARAGGPVSGMGXLLISKIREEYPDRIM 574
RKEAE+CD G + GG SGMG LLISKIREEYPDR+M
Sbjct: 121 RKEAENCDCLQGFQV-CHSLGGGTGSGMGTLLISKIREEYPDRMM 164
Score = 34.7 bits (76), Expect = 0.056
Identities = 27/68 (39%), Positives = 30/68 (44%)
Frame = +3
Query: 465 CLQGFQLTHSLGRAARFPVWXXXXXXXXXXXTLTE**NTYSVVPSPKVSDTVSRTVQRHT 644
CLQGFQ+ HSLG + T+SV PSPKVSDTV T
Sbjct: 129 CLQGFQVCHSLGGGTGSGMGTLLISKIREEYP-DRMMLTFSVFPSPKVSDTVVEPYNA-T 186
Query: 645 FSFINLVE 668
S LVE
Sbjct: 187 LSVHQLVE 194
>At4g20890.1 68417.m03029 tubulin beta-9 chain (TUB9) nearly
identical to SP|P29517 Tubulin beta-9 chain {Arabidopsis
thaliana}
Length = 444
Score = 277 bits (680), Expect = 4e-75
Identities = 130/165 (78%), Positives = 142/165 (86%)
Frame = +2
Query: 80 MREIVHIQAGQCGNQIGAKFWEIISDEHGIDPTGAYHGDSDLQLERINVYYNEASGGQDV 259
MREI+HIQ GQCGNQIGAKFWE+I EHGID TG GD+DLQLERINVY+NEASGG+ V
Sbjct: 1 MREILHIQGGQCGNQIGAKFWEVICGEHGIDQTGQSCGDTDLQLERINVYFNEASGGKYV 60
Query: 260 PRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQXGAGNNWAKGHYTEGAELVDSVLDVV 439
PRA+L+DLEPGTMDS+RSGPFGQIFRPDNFVFGQ GAGNNWAKGHYTEGAEL+DSVLDVV
Sbjct: 61 PRAVLMDLEPGTMDSLRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVV 120
Query: 440 RKEAESCDLPPGIPTDTLARAGGPVSGMGXLLISKIREEYPDRIM 574
RKEAE+CD G + GG SGMG LLISKIREEYPDR+M
Sbjct: 121 RKEAENCDCLQGFQV-CHSLGGGTGSGMGTLLISKIREEYPDRMM 164
Score = 35.1 bits (77), Expect = 0.043
Identities = 27/68 (39%), Positives = 30/68 (44%)
Frame = +3
Query: 465 CLQGFQLTHSLGRAARFPVWXXXXXXXXXXXTLTE**NTYSVVPSPKVSDTVSRTVQRHT 644
CLQGFQ+ HSLG + T+SV PSPKVSDTV T
Sbjct: 129 CLQGFQVCHSLGGGTGSGMGTLLISKIREEYP-DRMMMTFSVFPSPKVSDTVVEPYNA-T 186
Query: 645 FSFINLVE 668
S LVE
Sbjct: 187 LSVHQLVE 194
>At2g29550.1 68415.m03589 tubulin beta-7 chain (TUB7) identical to
GB:M84704 SP|P29515 Tubulin beta-7 chain {Arabidopsis
thaliana}
Length = 449
Score = 276 bits (677), Expect = 8e-75
Identities = 128/165 (77%), Positives = 143/165 (86%)
Frame = +2
Query: 80 MREIVHIQAGQCGNQIGAKFWEIISDEHGIDPTGAYHGDSDLQLERINVYYNEASGGQDV 259
MREI+HIQ GQCGNQIG+KFWE+++ EHGID TG Y GDS+LQLER+NVYYNEAS G+ V
Sbjct: 1 MREILHIQGGQCGNQIGSKFWEVVNLEHGIDQTGRYVGDSELQLERVNVYYNEASCGRYV 60
Query: 260 PRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQXGAGNNWAKGHYTEGAELVDSVLDVV 439
PRA+L+DLEPGTMDSVRSGP+GQIFRPDNFVFGQ GAGNNWAKGHYTEGAEL+DSVLDVV
Sbjct: 61 PRAVLMDLEPGTMDSVRSGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVV 120
Query: 440 RKEAESCDLPPGIPTDTLARAGGPVSGMGXLLISKIREEYPDRIM 574
RKEAE+CD G + GG SGMG LLISKIREEYPDR+M
Sbjct: 121 RKEAENCDCLQGFQV-CHSLGGGTGSGMGTLLISKIREEYPDRMM 164
Score = 35.1 bits (77), Expect = 0.043
Identities = 27/68 (39%), Positives = 30/68 (44%)
Frame = +3
Query: 465 CLQGFQLTHSLGRAARFPVWXXXXXXXXXXXTLTE**NTYSVVPSPKVSDTVSRTVQRHT 644
CLQGFQ+ HSLG + T+SV PSPKVSDTV T
Sbjct: 129 CLQGFQVCHSLGGGTGSGMGTLLISKIREEYP-DRMMMTFSVFPSPKVSDTVVEPYNA-T 186
Query: 645 FSFINLVE 668
S LVE
Sbjct: 187 LSVHQLVE 194
>At5g44340.1 68418.m05429 tubulin beta-4 chain (TUB4) nearly
identical to SP|P24636 Tubulin beta-4 chain {Arabidopsis
thaliana}
Length = 444
Score = 276 bits (676), Expect = 1e-74
Identities = 130/165 (78%), Positives = 142/165 (86%)
Frame = +2
Query: 80 MREIVHIQAGQCGNQIGAKFWEIISDEHGIDPTGAYHGDSDLQLERINVYYNEASGGQDV 259
MREI+HIQ GQCGNQIGAKFWE+I DEHGID TG Y GDS LQLERI+VY+NEASGG+ V
Sbjct: 1 MREILHIQGGQCGNQIGAKFWEVICDEHGIDHTGQYVGDSPLQLERIDVYFNEASGGKYV 60
Query: 260 PRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQXGAGNNWAKGHYTEGAELVDSVLDVV 439
PRA+L+DLEPGTMDS+RSGPFGQIFRPDNFVFGQ GAGNNWAKGHYTEGAEL+DSVLDVV
Sbjct: 61 PRAVLMDLEPGTMDSLRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVV 120
Query: 440 RKEAESCDLPPGIPTDTLARAGGPVSGMGXLLISKIREEYPDRIM 574
RKEAE+ D G + GG SGMG LLISKIREEYPDR+M
Sbjct: 121 RKEAENSDCLQGFQV-CHSLGGGTGSGMGTLLISKIREEYPDRMM 164
Score = 35.1 bits (77), Expect = 0.043
Identities = 27/68 (39%), Positives = 30/68 (44%)
Frame = +3
Query: 465 CLQGFQLTHSLGRAARFPVWXXXXXXXXXXXTLTE**NTYSVVPSPKVSDTVSRTVQRHT 644
CLQGFQ+ HSLG + T+SV PSPKVSDTV T
Sbjct: 129 CLQGFQVCHSLGGGTGSGMGTLLISKIREEYP-DRMMMTFSVFPSPKVSDTVVEPYNA-T 186
Query: 645 FSFINLVE 668
S LVE
Sbjct: 187 LSVHQLVE 194
>At5g19780.1 68418.m02351 tubulin alpha-3/alpha-5 chain (TUA5)
nearly identical to SP|P20363 Tubulin alpha-3/alpha-5
chain {Arabidopsis thaliana}
Length = 450
Score = 138 bits (333), Expect = 4e-33
Identities = 68/162 (41%), Positives = 97/162 (59%), Gaps = 2/162 (1%)
Frame = +2
Query: 80 MREIVHIQAGQCGNQIGAKFWEIISDEHGIDPTGAYHGDSDLQL--ERINVYYNEASGGQ 253
MREI+ I GQ G Q+G WE+ EHGI P G D+ + + + N +++E G+
Sbjct: 1 MREIISIHIGQAGIQVGNSCWELYCLEHGIQPDGMMPSDTTVGVAHDAFNTFFSETGAGK 60
Query: 254 DVPRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQXGAGNNWAKGHYTEGAELVDSVLD 433
VPRA+ VDLEP +D VR+G + Q+F P+ + G+ A NN+A+GHYT G E+VD LD
Sbjct: 61 HVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANNFARGHYTVGKEIVDLCLD 120
Query: 434 VVRKEAESCDLPPGIPTDTLARAGGPVSGMGXLLISKIREEY 559
VRK A++C G A GG SG+G LL+ ++ +Y
Sbjct: 121 RVRKLADNCTGLQGFLVFN-AVGGGTGSGLGSLLLERLSVDY 161
>At5g19770.1 68418.m02350 tubulin alpha-3/alpha-5 chain (TUA3)
nearly identical to SP|P20363 Tubulin alpha-3/alpha-5
chain {Arabidopsis thaliana}
Length = 450
Score = 138 bits (333), Expect = 4e-33
Identities = 68/162 (41%), Positives = 97/162 (59%), Gaps = 2/162 (1%)
Frame = +2
Query: 80 MREIVHIQAGQCGNQIGAKFWEIISDEHGIDPTGAYHGDSDLQL--ERINVYYNEASGGQ 253
MREI+ I GQ G Q+G WE+ EHGI P G D+ + + + N +++E G+
Sbjct: 1 MREIISIHIGQAGIQVGNSCWELYCLEHGIQPDGMMPSDTTVGVAHDAFNTFFSETGAGK 60
Query: 254 DVPRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQXGAGNNWAKGHYTEGAELVDSVLD 433
VPRA+ VDLEP +D VR+G + Q+F P+ + G+ A NN+A+GHYT G E+VD LD
Sbjct: 61 HVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANNFARGHYTVGKEIVDLCLD 120
Query: 434 VVRKEAESCDLPPGIPTDTLARAGGPVSGMGXLLISKIREEY 559
VRK A++C G A GG SG+G LL+ ++ +Y
Sbjct: 121 RVRKLADNCTGLQGFLVFN-AVGGGTGSGLGSLLLERLSVDY 161
>At1g64740.1 68414.m07340 tubulin alpha-1 chain (TUA1) nearly
identical to SP|P11139 Tubulin alpha-1 chain
{Arabidopsis thaliana}
Length = 450
Score = 137 bits (332), Expect = 5e-33
Identities = 67/162 (41%), Positives = 98/162 (60%), Gaps = 2/162 (1%)
Frame = +2
Query: 80 MREIVHIQAGQCGNQIGAKFWEIISDEHGIDPTGAYHGDSDLQL--ERINVYYNEASGGQ 253
MREI+ I GQ G Q+G WE+ EHGI P G DS + + N +++E S GQ
Sbjct: 1 MREIISIHIGQAGIQVGNSCWELYCLEHGIQPDGTMPSDSTVGACHDAFNTFFSETSSGQ 60
Query: 254 DVPRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQXGAGNNWAKGHYTEGAELVDSVLD 433
VPRA+ +DLEP +D VR+G + Q+F P+ + G+ A NN+A+GHYT G E+VD+ L+
Sbjct: 61 HVPRAVFLDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANNFARGHYTVGREIVDTCLE 120
Query: 434 VVRKEAESCDLPPGIPTDTLARAGGPVSGMGXLLISKIREEY 559
+RK A++C G A GG SG+G LL+ ++ ++
Sbjct: 121 RLRKLADNCTGLQGFLVFN-AVGGGTGSGLGSLLLERLSVDF 161
>At4g14960.2 68417.m02299 tubulin alpha-6 chain (TUA6) nearly
identical to SP|P29511 Tubulin alpha-6 chain
{Arabidopsis thaliana}
Length = 450
Score = 134 bits (325), Expect = 4e-32
Identities = 67/162 (41%), Positives = 95/162 (58%), Gaps = 2/162 (1%)
Frame = +2
Query: 80 MREIVHIQAGQCGNQIGAKFWEIISDEHGIDPTGAYHGDSDLQL--ERINVYYNEASGGQ 253
MRE + I GQ G Q+G WE+ EHGI P G GD + + N +++E G+
Sbjct: 1 MRECISIHIGQAGIQVGNACWELYCLEHGIQPDGQMPGDKTVGGGDDAFNTFFSETGAGK 60
Query: 254 DVPRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQXGAGNNWAKGHYTEGAELVDSVLD 433
VPRA+ VDLEP +D VR+G + Q+F P+ + G+ A NN+A+GHYT G E+VD LD
Sbjct: 61 HVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLD 120
Query: 434 VVRKEAESCDLPPGIPTDTLARAGGPVSGMGXLLISKIREEY 559
+RK A++C G A GG SG+G LL+ ++ +Y
Sbjct: 121 RIRKLADNCTGLQGFLVFN-AVGGGTGSGLGSLLLERLSVDY 161
>At4g14960.1 68417.m02298 tubulin alpha-6 chain (TUA6) nearly
identical to SP|P29511 Tubulin alpha-6 chain
{Arabidopsis thaliana}
Length = 427
Score = 134 bits (325), Expect = 4e-32
Identities = 67/162 (41%), Positives = 95/162 (58%), Gaps = 2/162 (1%)
Frame = +2
Query: 80 MREIVHIQAGQCGNQIGAKFWEIISDEHGIDPTGAYHGDSDLQL--ERINVYYNEASGGQ 253
MRE + I GQ G Q+G WE+ EHGI P G GD + + N +++E G+
Sbjct: 1 MRECISIHIGQAGIQVGNACWELYCLEHGIQPDGQMPGDKTVGGGDDAFNTFFSETGAGK 60
Query: 254 DVPRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQXGAGNNWAKGHYTEGAELVDSVLD 433
VPRA+ VDLEP +D VR+G + Q+F P+ + G+ A NN+A+GHYT G E+VD LD
Sbjct: 61 HVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLD 120
Query: 434 VVRKEAESCDLPPGIPTDTLARAGGPVSGMGXLLISKIREEY 559
+RK A++C G A GG SG+G LL+ ++ +Y
Sbjct: 121 RIRKLADNCTGLQGFLVFN-AVGGGTGSGLGSLLLERLSVDY 161
>At1g50010.1 68414.m05612 tubulin alpha-2/alpha-4 chain (TUA2)
identical to tubulin alpha-2/alpha-4 chain SP|P29510
GB:P29510 from [Arabidopsis thaliana]
Length = 450
Score = 132 bits (319), Expect = 2e-31
Identities = 66/162 (40%), Positives = 94/162 (58%), Gaps = 2/162 (1%)
Frame = +2
Query: 80 MREIVHIQAGQCGNQIGAKFWEIISDEHGIDPTGAYHGDSDLQL--ERINVYYNEASGGQ 253
MRE + I GQ G Q+G WE+ EHGI P G D + + N +++E G+
Sbjct: 1 MRECISIHIGQAGIQVGNACWELYCLEHGIQPDGQMPSDKTVGGGDDAFNTFFSETGAGK 60
Query: 254 DVPRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQXGAGNNWAKGHYTEGAELVDSVLD 433
VPRA+ VDLEP +D VR+G + Q+F P+ + G+ A NN+A+GHYT G E+VD LD
Sbjct: 61 HVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLD 120
Query: 434 VVRKEAESCDLPPGIPTDTLARAGGPVSGMGXLLISKIREEY 559
+RK A++C G A GG SG+G LL+ ++ +Y
Sbjct: 121 RIRKLADNCTGLQGFLVFN-AVGGGTGSGLGSLLLERLSVDY 161
>At1g04820.1 68414.m00478 tubulin alpha-2/alpha-4 chain (TUA4)
nearly identical to SP:P29510 Tubulin alpha-2/alpha-4
chain from [Arabidopsis thaliana]
Length = 450
Score = 132 bits (319), Expect = 2e-31
Identities = 66/162 (40%), Positives = 94/162 (58%), Gaps = 2/162 (1%)
Frame = +2
Query: 80 MREIVHIQAGQCGNQIGAKFWEIISDEHGIDPTGAYHGDSDLQL--ERINVYYNEASGGQ 253
MRE + I GQ G Q+G WE+ EHGI P G D + + N +++E G+
Sbjct: 1 MRECISIHIGQAGIQVGNACWELYCLEHGIQPDGQMPSDKTVGGGDDAFNTFFSETGAGK 60
Query: 254 DVPRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQXGAGNNWAKGHYTEGAELVDSVLD 433
VPRA+ VDLEP +D VR+G + Q+F P+ + G+ A NN+A+GHYT G E+VD LD
Sbjct: 61 HVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLD 120
Query: 434 VVRKEAESCDLPPGIPTDTLARAGGPVSGMGXLLISKIREEY 559
+RK A++C G A GG SG+G LL+ ++ +Y
Sbjct: 121 RIRKLADNCTGLQGFLVFN-AVGGGTGSGLGSLLLERLSVDY 161
>At5g05620.1 68418.m00612 tubulin gamma-2 chain / gamma-2 tubulin
(TUBG2) identical to SP|P38558 Tubulin gamma-2 chain
(Gamma-2 tubulin) {Arabidopsis thaliana}
Length = 474
Score = 114 bits (275), Expect = 4e-26
Identities = 56/167 (33%), Positives = 96/167 (57%), Gaps = 2/167 (1%)
Frame = +2
Query: 83 REIVHIQAGQCGNQIGAKFWEIISDEHGIDPTGAYHGDSDLQLERINVYYNEASGGQDVP 262
REI+ +Q GQCGNQIG +FW+ + EHGI G + +R +V++ +A +P
Sbjct: 3 REIITLQVGQCGNQIGMEFWKQLCLEHGISKDGILEDFATQGGDRKDVFFYQADDQHYIP 62
Query: 263 RAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQ--XGAGNNWAKGHYTEGAELVDSVLDV 436
RA+L+DLEP ++ +++G + ++ +N GAGNNWA G Y +G + + ++D+
Sbjct: 63 RALLIDLEPRVINGIQNGEYRNLYNHENIFLSDHGGGAGNNWASG-YHQGKGVEEEIMDM 121
Query: 437 VRKEAESCDLPPGIPTDTLARAGGPVSGMGXLLISKIREEYPDRIMK 577
+ +EA+ D G + AGG SGMG L+ + + Y ++++
Sbjct: 122 IDREADGSDSLEGFVL-CHSIAGGTGSGMGSYLLETLNDRYSKKLVQ 167
>At3g61650.1 68416.m06909 tubulin gamma-1 chain / gamma-1 tubulin
(TUBG1) identical to SP|P38557 Tubulin gamma-1 chain
(Gamma-1 tubulin) {Arabidopsis thaliana}
Length = 474
Score = 114 bits (274), Expect = 6e-26
Identities = 56/167 (33%), Positives = 96/167 (57%), Gaps = 2/167 (1%)
Frame = +2
Query: 83 REIVHIQAGQCGNQIGAKFWEIISDEHGIDPTGAYHGDSDLQLERINVYYNEASGGQDVP 262
REI+ +Q GQCGNQIG +FW+ + EHGI G + +R +V++ +A +P
Sbjct: 3 REIITLQVGQCGNQIGMEFWKQLCLEHGISKDGILEDFATQGGDRKDVFFYQADDQHYIP 62
Query: 263 RAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQ--XGAGNNWAKGHYTEGAELVDSVLDV 436
RA+L+DLEP ++ +++G + ++ +N GAGNNWA G Y +G + + ++D+
Sbjct: 63 RALLIDLEPRVINGIQNGDYRNLYNHENIFVADHGGGAGNNWASG-YHQGKGVEEEIMDM 121
Query: 437 VRKEAESCDLPPGIPTDTLARAGGPVSGMGXLLISKIREEYPDRIMK 577
+ +EA+ D G + AGG SGMG L+ + + Y ++++
Sbjct: 122 IDREADGSDSLEGFVL-CHSIAGGTGSGMGSYLLETLNDRYSKKLVQ 167
>At4g37190.1 68417.m05265 expressed protein
Length = 562
Score = 31.5 bits (68), Expect = 0.52
Identities = 28/84 (33%), Positives = 41/84 (48%), Gaps = 9/84 (10%)
Frame = +2
Query: 80 MREIVHIQAGQCGNQIGAKFWEIISDEHGI--DP-TGAYHGDSDLQLERINVYYNEASGG 250
MREIV IQ G+ N +G+ FW + G+ DP + + +L ++ V Y
Sbjct: 1 MREIVTIQVGEFANFVGSHFWNFQDELLGLASDPESDPIFRNHNLDMD---VLYRSGETQ 57
Query: 251 QDV----PRAILVDLEP--GTMDS 304
Q V PR + V+L+ GTM S
Sbjct: 58 QGVATYTPRLVSVNLKGALGTMSS 81
>At1g21850.1 68414.m02735 multi-copper oxidase type I family protein
similar to pollen-specific BP10 protein
[SP|Q00624][Brassica napus]; contains Pfam profile:
PF00394 Multicopper oxidase
Length = 551
Score = 29.1 bits (62), Expect = 2.8
Identities = 23/73 (31%), Positives = 33/73 (45%)
Frame = -2
Query: 247 AGGFIVVYIDALQLQVRVPMVSTGGVDAVLVGDDLPELSSDLVAALTSLDMYDFPHFVLF 68
AGGF + I + + ++ VP + G VL+GD DL A L + FP +L
Sbjct: 137 AGGFGAIRISS-RPRIPVPFPAPAGDYTVLIGDWYKTNHKDLRAQLDNGGKLPFPDGILI 195
Query: 67 M*TINYLTLKISP 29
+ TL I P
Sbjct: 196 NGRGSGATLNIEP 208
>At2g45300.1 68415.m05638 3-phosphoshikimate
1-carboxyvinyltransferase /
5-enolpyruvylshikimate-3-phosphate / EPSP synthase
nearly identical to SP|P05466
Length = 520
Score = 28.7 bits (61), Expect = 3.7
Identities = 14/35 (40%), Positives = 18/35 (51%)
Frame = -3
Query: 507 PPARASVSVGIPGGKSHDSASFRTTSKTESTSSAP 403
PP R + + G+PGGK S S + T SAP
Sbjct: 232 PPVRVNANGGLPGGKVKLSGSISSQYLTALLMSAP 266
>At1g09530.2 68414.m01069 phytochrome interacting factor 3 (PIF3)
identical to phytochrome interacting factor 3 (PIF3)
GI:3929585 from [Arabidopsis thaliana]
Length = 524
Score = 28.3 bits (60), Expect = 4.9
Identities = 22/74 (29%), Positives = 33/74 (44%), Gaps = 4/74 (5%)
Frame = -2
Query: 385 GPVVTGAXLSEDEVVRTEDLSERSRADRVHG--AGLQVDEDGAGHVLPAGGF--IVVYID 218
GP TG +LSER R DR++ LQ V A + Y+
Sbjct: 331 GPSRTGLGSKRSRSAEVHNLSERRRRDRINEKMRALQELIPNCNKVDKASMLDEAIEYLK 390
Query: 217 ALQLQVRVPMVSTG 176
+LQLQV++ +++G
Sbjct: 391 SLQLQVQIMSMASG 404
>At1g09530.1 68414.m01068 phytochrome interacting factor 3 (PIF3)
identical to phytochrome interacting factor 3 (PIF3)
GI:3929585 from [Arabidopsis thaliana]
Length = 524
Score = 28.3 bits (60), Expect = 4.9
Identities = 22/74 (29%), Positives = 33/74 (44%), Gaps = 4/74 (5%)
Frame = -2
Query: 385 GPVVTGAXLSEDEVVRTEDLSERSRADRVHG--AGLQVDEDGAGHVLPAGGF--IVVYID 218
GP TG +LSER R DR++ LQ V A + Y+
Sbjct: 331 GPSRTGLGSKRSRSAEVHNLSERRRRDRINEKMRALQELIPNCNKVDKASMLDEAIEYLK 390
Query: 217 ALQLQVRVPMVSTG 176
+LQLQV++ +++G
Sbjct: 391 SLQLQVQIMSMASG 404
>At5g26110.1 68418.m03106 expressed protein
Length = 226
Score = 27.5 bits (58), Expect = 8.5
Identities = 19/43 (44%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
Frame = -2
Query: 664 TKLMKLKVWRCTVLLTVSDTLGDGTT-EYVFHYSVRVLFSDFG 539
TK KL V CT +L DTL T EY+ SV+ +F +FG
Sbjct: 65 TKARKLGV--CTPVLYAVDTLLHSLTLEYIEGVSVKDIFLEFG 105
>At3g10900.1 68416.m01312 (1-4)-beta-mannan endohydrolase, putative
similar to (1-4)-beta-mannan endohydrolase [Coffea
arabica] GI:10178872, (1-4)-beta-mannan endohydrolase
GB:AAB87859 [Lycopersicon esculentum]; contains Pfam
profile PF00150: Cellulase (glycosyl hydrolase family 5)
Length = 408
Score = 27.5 bits (58), Expect = 8.5
Identities = 10/24 (41%), Positives = 17/24 (70%)
Frame = +2
Query: 86 EIVHIQAGQCGNQIGAKFWEIISD 157
+I++ A + G+ GA FWE+IS+
Sbjct: 346 DIIYASAQKGGSAAGALFWEVISE 369
>At1g48860.2 68414.m05470 3-phosphoshikimate
1-carboxyvinyltransferase, putative /
5-enolpyruvylshikimate-3-phosphate, putative / EPSP
synthase, putative strong similarity to
5-enolpyruvylshikimate-3-phosphate (EPSP) synthase
SP|P05466 from (Arabidopsis thaliana)
Length = 489
Score = 27.5 bits (58), Expect = 8.5
Identities = 13/35 (37%), Positives = 18/35 (51%)
Frame = -3
Query: 507 PPARASVSVGIPGGKSHDSASFRTTSKTESTSSAP 403
PP R + + G+PGGK S S + T +AP
Sbjct: 176 PPVRVNANGGLPGGKVKLSGSISSQYLTALLMAAP 210
>At1g48860.1 68414.m05471 3-phosphoshikimate
1-carboxyvinyltransferase, putative /
5-enolpyruvylshikimate-3-phosphate, putative / EPSP
synthase, putative strong similarity to
5-enolpyruvylshikimate-3-phosphate (EPSP) synthase
SP|P05466 from (Arabidopsis thaliana)
Length = 521
Score = 27.5 bits (58), Expect = 8.5
Identities = 13/35 (37%), Positives = 18/35 (51%)
Frame = -3
Query: 507 PPARASVSVGIPGGKSHDSASFRTTSKTESTSSAP 403
PP R + + G+PGGK S S + T +AP
Sbjct: 233 PPVRVNANGGLPGGKVKLSGSISSQYLTALLMAAP 267
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,604,863
Number of Sequences: 28952
Number of extensions: 270568
Number of successful extensions: 943
Number of sequences better than 10.0: 27
Number of HSP's better than 10.0 without gapping: 856
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 896
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1412971776
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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