Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060427.seq
         (682 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q4DSX9 Cluster: Putative uncharacterized protein; n=2; ...    36   1.2  
UniRef50_Q3AB60 Cluster: Radical SAM domain protein; n=8; Bacter...    33   6.4  

>UniRef50_Q4DSX9 Cluster: Putative uncharacterized protein; n=2;
           Trypanosoma cruzi|Rep: Putative uncharacterized protein
           - Trypanosoma cruzi
          Length = 616

 Score = 35.5 bits (78), Expect = 1.2
 Identities = 24/93 (25%), Positives = 39/93 (41%)
 Frame = +3

Query: 177 GDQFKSEVTW*NMATGPSRNHLQQISTFYATGYVPNTHTAADIVLSMASLIFKDKGKAPI 356
           G++F   ++W      P    L Q  TF+A+  VP      +  L  +   + D    P 
Sbjct: 359 GNEFPPPLSWGETHHDPMNVFLDQ-RTFFASSNVPPEDKQVNAFLDESVTAWMDDD-CPC 416

Query: 357 DLIWDDSFQASPTEECGFSVVGETPLGIGQHPG 455
           DL+W++  + +   E     V E P+  G  PG
Sbjct: 417 DLLWEEYIEPAAAREGERGGVWEIPIAPGCLPG 449


>UniRef50_Q3AB60 Cluster: Radical SAM domain protein; n=8;
           Bacteria|Rep: Radical SAM domain protein -
           Carboxydothermus hydrogenoformans (strain Z-2901 / DSM
           6008)
          Length = 358

 Score = 33.1 bits (72), Expect = 6.4
 Identities = 21/74 (28%), Positives = 31/74 (41%)
 Frame = +1

Query: 184 SLNLKLPGEIWQLAHQETIFNRFLHFTLLGMFQIHTQPQTLYSPWHH*SSRTRAKHLLI* 363
           SL +K    +    H E   +R +H   L   Q  T+  T + PW    + T   HLL  
Sbjct: 205 SLGMKTTATM-MFGHVENYEDRIIHLENLRQLQDKTRGFTAFIPWSFQPANTALAHLLPA 263

Query: 364 FGMTHFKLVPLRSV 405
            GM + K V +  +
Sbjct: 264 GGMDYLKTVAISRI 277


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 690,754,487
Number of Sequences: 1657284
Number of extensions: 13849767
Number of successful extensions: 29700
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 28852
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 29689
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 52892566912
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)