Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060427.seq
         (682 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY584475-1|AAS93634.1|  209|Tribolium castaneum homothorax protein.    25   0.76 
AJ518941-1|CAD57735.1|  456|Tribolium castaneum homothorax protein.    25   0.76 
EF468474-1|ABR25244.1|  516|Tribolium castaneum methoprene-toler...    23   1.8  
EF592539-1|ABQ95985.1|  630|Tribolium castaneum beta-N-acetylglu...    22   4.0  
AM292362-1|CAL23174.2|  398|Tribolium castaneum gustatory recept...    22   4.0  
U81038-1|AAB39355.1|  412|Tribolium castaneum transcription fact...    22   5.3  
AF321227-3|AAK16423.1|  412|Tribolium castaneum Dfd protein.           22   5.3  
EU019710-1|ABU25222.1|  475|Tribolium castaneum dopa decarboxyla...    21   7.1  
AM292378-1|CAL23190.2|  387|Tribolium castaneum gustatory recept...    21   9.3  
AF025669-1|AAB81523.1|  243|Tribolium castaneum GABA receptor su...    21   9.3  

>AY584475-1|AAS93634.1|  209|Tribolium castaneum homothorax protein.
          Length = 209

 Score = 24.6 bits (51), Expect = 0.76
 Identities = 11/23 (47%), Positives = 13/23 (56%)
 Frame = +3

Query: 339 KGKAPIDLIWDDSFQASPTEECG 407
           KGK PIDL+ D+     P E  G
Sbjct: 24  KGKMPIDLVIDERDGGKPPELTG 46


>AJ518941-1|CAD57735.1|  456|Tribolium castaneum homothorax protein.
          Length = 456

 Score = 24.6 bits (51), Expect = 0.76
 Identities = 11/23 (47%), Positives = 13/23 (56%)
 Frame = +3

Query: 339 KGKAPIDLIWDDSFQASPTEECG 407
           KGK PIDL+ D+     P E  G
Sbjct: 180 KGKMPIDLVIDERDGGKPPELTG 202


>EF468474-1|ABR25244.1|  516|Tribolium castaneum methoprene-tolerant
           protein.
          Length = 516

 Score = 23.4 bits (48), Expect = 1.8
 Identities = 11/29 (37%), Positives = 17/29 (58%)
 Frame = +2

Query: 536 KTFGDLKITPRXDLERMVSGNXLFXDQKG 622
           +TFG L+I  +  +E  V  N L  +Q+G
Sbjct: 329 RTFGFLEIDDQGTVESFVCVNTLVSEQEG 357


>EF592539-1|ABQ95985.1|  630|Tribolium castaneum
           beta-N-acetylglucosaminidase FDL protein.
          Length = 630

 Score = 22.2 bits (45), Expect = 4.0
 Identities = 6/16 (37%), Positives = 11/16 (68%)
 Frame = -2

Query: 438 YPMEFLQQRRTHTPQW 391
           Y   + +Q+++H PQW
Sbjct: 41  YRQPYPRQKKSHPPQW 56


>AM292362-1|CAL23174.2|  398|Tribolium castaneum gustatory receptor
           candidate 41 protein.
          Length = 398

 Score = 22.2 bits (45), Expect = 4.0
 Identities = 6/8 (75%), Positives = 8/8 (100%)
 Frame = -3

Query: 296 GCVCIWNI 273
           GC+CIW+I
Sbjct: 53  GCLCIWSI 60


>U81038-1|AAB39355.1|  412|Tribolium castaneum transcription factor
           Deformed protein.
          Length = 412

 Score = 21.8 bits (44), Expect = 5.3
 Identities = 8/23 (34%), Positives = 12/23 (52%)
 Frame = -1

Query: 454 PGCCPIPNGVSPTTENPHSSVGL 386
           PGC P   G+ PT ++ +    L
Sbjct: 390 PGCGPGQGGLQPTIKSDYGLTAL 412


>AF321227-3|AAK16423.1|  412|Tribolium castaneum Dfd protein.
          Length = 412

 Score = 21.8 bits (44), Expect = 5.3
 Identities = 8/23 (34%), Positives = 12/23 (52%)
 Frame = -1

Query: 454 PGCCPIPNGVSPTTENPHSSVGL 386
           PGC P   G+ PT ++ +    L
Sbjct: 390 PGCGPGQGGLQPTIKSDYGLTAL 412


>EU019710-1|ABU25222.1|  475|Tribolium castaneum dopa decarboxylase
           protein.
          Length = 475

 Score = 21.4 bits (43), Expect = 7.1
 Identities = 7/14 (50%), Positives = 10/14 (71%)
 Frame = +2

Query: 248 DFYILRYWVCSKYT 289
           D Y LR  +CS++T
Sbjct: 440 DVYFLRLAICSRFT 453



 Score = 21.0 bits (42), Expect = 9.3
 Identities = 9/24 (37%), Positives = 16/24 (66%)
 Frame = -2

Query: 285 YLEHTQ*RKM*KSVEDGFLMGQLP 214
           YLE+ + R++  +VE G+L   +P
Sbjct: 20  YLENIRDRRVLPTVEPGYLRPLIP 43


>AM292378-1|CAL23190.2|  387|Tribolium castaneum gustatory receptor
           candidate 57 protein.
          Length = 387

 Score = 21.0 bits (42), Expect = 9.3
 Identities = 6/10 (60%), Positives = 7/10 (70%)
 Frame = -2

Query: 156 ICFFWLERSP 127
           ICF+WL   P
Sbjct: 317 ICFYWLNEIP 326


>AF025669-1|AAB81523.1|  243|Tribolium castaneum GABA receptor
           subunit protein.
          Length = 243

 Score = 21.0 bits (42), Expect = 9.3
 Identities = 6/25 (24%), Positives = 13/25 (52%)
 Frame = +2

Query: 227 IKKPSSTDFYILRYWVCSKYTHSRR 301
           +K   + DFY  ++W   +  + +R
Sbjct: 82  VKMDFTLDFYFRQFWTDPRLAYGKR 106


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 162,849
Number of Sequences: 336
Number of extensions: 3577
Number of successful extensions: 16
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 17801955
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)