Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060427.seq
         (682 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC16A11.04 |snx12||sorting nexin Snx12 |Schizosaccharomyces po...    30   0.36 
SPAC24C9.09 |||mitochondrial threonine-tRNA ligase|Schizosacchar...    27   2.5  
SPBC1709.08 |cft1||cleavage factor one Cft1 |Schizosaccharomyces...    26   5.8  

>SPCC16A11.04 |snx12||sorting nexin Snx12 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1010

 Score = 29.9 bits (64), Expect = 0.36
 Identities = 19/51 (37%), Positives = 28/51 (54%)
 Frame = +3

Query: 282 NTHTAADIVLSMASLIFKDKGKAPIDLIWDDSFQASPTEECGFSVVGETPL 434
           N+  +  I LS++S I +DK  +P+DL  DD    S  EE  F+  G+  L
Sbjct: 576 NSSPSPSIQLSVSSSISRDKNLSPLDLELDDP-TYSDEEEVLFAPPGDLQL 625


>SPAC24C9.09 |||mitochondrial threonine-tRNA
           ligase|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 473

 Score = 27.1 bits (57), Expect = 2.5
 Identities = 13/29 (44%), Positives = 17/29 (58%)
 Frame = +1

Query: 202 PGEIWQLAHQETIFNRFLHFTLLGMFQIH 288
           PG I+ L H   I+NR + F L   +QIH
Sbjct: 65  PGSIFFLPHGTRIYNRLVDF-LRAQYQIH 92


>SPBC1709.08 |cft1||cleavage factor one Cft1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1441

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 9/23 (39%), Positives = 13/23 (56%)
 Frame = -3

Query: 314 GEYNVCGCVCIWNIPSSVKCRNL 246
           GE+   GC  +W +  S K RN+
Sbjct: 551 GEFQFDGCEALWTVSISGKLRNM 573


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,823,861
Number of Sequences: 5004
Number of extensions: 57359
Number of successful extensions: 134
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 131
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 134
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 313902888
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)