Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060427.seq
         (682 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_02_0326 - 15810065-15810315,15811653-15811787,15812466-158125...    30   2.0  
04_04_1668 + 35217254-35218531                                         30   2.0  
10_01_0076 - 987092-987671,987747-987812,988201-988363,988467-98...    29   3.4  

>08_02_0326 -
           15810065-15810315,15811653-15811787,15812466-15812564,
           15813334-15813352
          Length = 167

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 20/62 (32%), Positives = 28/62 (45%)
 Frame = -1

Query: 469 CSHHHPGCCPIPNGVSPTTENPHSSVGLA*NESSQIKSIGALPLSLKISDAMESTMSAAV 290
           CS HH GCC +   V   T + H     A  E   + +   LP ++ I + M +  S A 
Sbjct: 96  CSMHHMGCCRMGTTVGNGTIDAHGESWEA--EQLYVCNDSVLPTAVGI-NPMITVQSVAY 152

Query: 289 CV 284
           CV
Sbjct: 153 CV 154


>04_04_1668 + 35217254-35218531
          Length = 425

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 26/96 (27%), Positives = 37/96 (38%), Gaps = 3/96 (3%)
 Frame = +3

Query: 54  GHHEASMGRTWDRRDRVPRDHGHSREISQARKNRLEC*YMSGDQFKSEVTW*NMATGPSR 233
           G    S GR    RD +P  HGH R  S    +       SG   +S ++W    T  + 
Sbjct: 196 GQRNRSFGRAGTTRDSLPHGHGHHRRSSSGGSSGSG----SGSHLRS-LSWSVSRTWSAA 250

Query: 234 NHLQQIS---TFYATGYVPNTHTAADIVLSMASLIF 332
             LQ I    T      +  T   A  V +M +++F
Sbjct: 251 RQLQAIGGGLTVPRANDIAATGGLASAVYAMGAVLF 286


>10_01_0076 -
           987092-987671,987747-987812,988201-988363,988467-988548,
           989153-989202,989237-989270,990177-990239,990339-990403,
           990485-990560,991274-991353,991514-991628,991729-991830
          Length = 491

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 17/43 (39%), Positives = 22/43 (51%), Gaps = 3/43 (6%)
 Frame = +3

Query: 36  RSYHDTGHHEASMGRTWDR---RDRVPRDHGHSREISQARKNR 155
           R   +  HH     RT DR   RDR  RDHG  R+  + R++R
Sbjct: 328 RDSKEDRHHHRDRDRTRDRERGRDR-ERDHGRDRDRERDRRDR 369


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,654,085
Number of Sequences: 37544
Number of extensions: 386686
Number of successful extensions: 871
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 849
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 869
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1721314888
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)