Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060427.seq
         (682 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_13055| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.0  
SB_23213| Best HMM Match : SH3_1 (HMM E-Value=9.2e-12)                 29   2.6  

>SB_13055| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1140

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 13/32 (40%), Positives = 18/32 (56%)
 Frame = +3

Query: 33  LRSYHDTGHHEASMGRTWDRRDRVPRDHGHSR 128
           +R YH T H    + +  DRR+R P + GH R
Sbjct: 158 VRGYHKT-HERGPIEKMPDRRERSPYERGHER 188


>SB_23213| Best HMM Match : SH3_1 (HMM E-Value=9.2e-12)
          Length = 979

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 18/73 (24%), Positives = 33/73 (45%), Gaps = 1/73 (1%)
 Frame = +1

Query: 37  DLIMTQGTMKPVWEELGTGETEYQGTMDILGRSLKPEKTDWSVNTCREISLN-LKLPGEI 213
           D+  T  T + +W+++         T   L R + P+K D + N   ++  N  +L G +
Sbjct: 34  DMEHTLDTQQEIWKDIKEDIASAHLTGTTLLRCISPDKNDENSNMTPDVKANTTELEGLL 93

Query: 214 WQLAHQETIFNRF 252
            +L   E  F +F
Sbjct: 94  QRLYQSEEDFGKF 106


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,438,536
Number of Sequences: 59808
Number of extensions: 442409
Number of successful extensions: 979
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 903
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 977
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1757375282
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)