Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060427.seq
         (682 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL391244-1|CAI22656.1|  473|Homo sapiens ATPase family, AAA doma...    32   1.6  
AL157945-1|CAI22067.1|  473|Homo sapiens ATPase family, AAA doma...    32   1.6  
AL136526-4|CAI39556.1|  111|Homo sapiens propionyl Coenzyme A ca...    32   1.6  

>AL391244-1|CAI22656.1|  473|Homo sapiens ATPase family, AAA domain
           containing 3C protein.
          Length = 473

 Score = 32.3 bits (70), Expect = 1.6
 Identities = 10/26 (38%), Positives = 18/26 (69%)
 Frame = +1

Query: 133 SLKPEKTDWSVNTCREISLNLKLPGE 210
           S  PE+ DW++N C ++ ++  LPG+
Sbjct: 278 SCHPEQFDWAINACIDVMVHFDLPGQ 303


>AL157945-1|CAI22067.1|  473|Homo sapiens ATPase family, AAA domain
           containing 3C protein.
          Length = 473

 Score = 32.3 bits (70), Expect = 1.6
 Identities = 10/26 (38%), Positives = 18/26 (69%)
 Frame = +1

Query: 133 SLKPEKTDWSVNTCREISLNLKLPGE 210
           S  PE+ DW++N C ++ ++  LPG+
Sbjct: 278 SCHPEQFDWAINACIDVMVHFDLPGQ 303


>AL136526-4|CAI39556.1|  111|Homo sapiens propionyl Coenzyme A
           carboxylase, alpha polypeptide protein.
          Length = 111

 Score = 32.3 bits (70), Expect = 1.6
 Identities = 14/32 (43%), Positives = 21/32 (65%)
 Frame = -1

Query: 340 LSLKISDAMESTMSAAVCVFGTYPVA*NVEIC 245
           +S+K  DA  S++S  +C+F T+ VA   EIC
Sbjct: 40  VSVKPGDAATSSLSVEICLFWTFQVAEGQEIC 71


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 104,283,989
Number of Sequences: 237096
Number of extensions: 2284559
Number of successful extensions: 4215
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 4036
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4215
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 7727256732
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)