Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060427.seq
         (682 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF077531-7|AAL27240.1|  418|Caenorhabditis elegans Gex interacti...    28   7.1  
AF077531-6|AAC64616.2|  408|Caenorhabditis elegans Gex interacti...    28   7.1  
AF036689-3|AAB88322.2|  557|Caenorhabditis elegans Hypothetical ...    28   7.1  
Z75953-3|CAB00100.1|  611|Caenorhabditis elegans Hypothetical pr...    27   9.4  
AF166171-1|AAD49860.1|  611|Caenorhabditis elegans adducin-head-...    27   9.4  

>AF077531-7|AAL27240.1|  418|Caenorhabditis elegans Gex interacting
           protein protein10, isoform b protein.
          Length = 418

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 14/49 (28%), Positives = 21/49 (42%)
 Frame = +1

Query: 73  WEELGTGETEYQGTMDILGRSLKPEKTDWSVNTCREISLNLKLPGEIWQ 219
           WE     E+  +GT  + G       TDW  N    +S  L+ P + W+
Sbjct: 313 WENKLISESTGKGTAPLSGHMFTRPDTDWRNNNTSYLSAALRTP-KFWE 360


>AF077531-6|AAC64616.2|  408|Caenorhabditis elegans Gex interacting
           protein protein10, isoform a protein.
          Length = 408

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 14/49 (28%), Positives = 21/49 (42%)
 Frame = +1

Query: 73  WEELGTGETEYQGTMDILGRSLKPEKTDWSVNTCREISLNLKLPGEIWQ 219
           WE     E+  +GT  + G       TDW  N    +S  L+ P + W+
Sbjct: 313 WENKLISESTGKGTAPLSGHMFTRPDTDWRNNNTSYLSAALRTP-KFWE 360


>AF036689-3|AAB88322.2|  557|Caenorhabditis elegans Hypothetical
           protein C50A2.2 protein.
          Length = 557

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 14/61 (22%), Positives = 25/61 (40%), Gaps = 2/61 (3%)
 Frame = +3

Query: 204 W*NMATGPSRNHLQQISTFYAT--GYVPNTHTAADIVLSMASLIFKDKGKAPIDLIWDDS 377
           W +   G       +I TF+    GY+PNTH  +   + ++     + G     + W + 
Sbjct: 405 WFSATGGGGSCGTTEICTFWNNDAGYLPNTHQRSKFHVDLSEFTGNNLGLLAFSMAWHED 464

Query: 378 F 380
           F
Sbjct: 465 F 465


>Z75953-3|CAB00100.1|  611|Caenorhabditis elegans Hypothetical
           protein F57F5.4a protein.
          Length = 611

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 12/28 (42%), Positives = 15/28 (53%)
 Frame = +1

Query: 169 TCREISLNLKLPGEIWQLAHQETIFNRF 252
           T  EI   L +PG  +  AH E + NRF
Sbjct: 192 TSDEIQKILNIPGTSFSQAHSEAVLNRF 219


>AF166171-1|AAD49860.1|  611|Caenorhabditis elegans
           adducin-head-domain-related protein protein.
          Length = 611

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 12/28 (42%), Positives = 15/28 (53%)
 Frame = +1

Query: 169 TCREISLNLKLPGEIWQLAHQETIFNRF 252
           T  EI   L +PG  +  AH E + NRF
Sbjct: 192 TSDEIQKILNIPGTSFSQAHSEAVLNRF 219


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,617,285
Number of Sequences: 27780
Number of extensions: 326743
Number of successful extensions: 692
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 677
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 691
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1550199966
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)