Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060427.seq
         (682 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated...    22   4.7  
AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9 methylt...    21   8.2  
AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                21   8.2  

>DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 510

 Score = 22.2 bits (45), Expect = 4.7
 Identities = 11/34 (32%), Positives = 17/34 (50%)
 Frame = +2

Query: 224 PIKKPSSTDFYILRYWVCSKYTHSRRHCTLHGIT 325
           PIK  S +   + R W    Y ++ +H  +H IT
Sbjct: 103 PIKSLSLSIKMLERIWRPDTYFYNGKHSYVHTIT 136


>AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9
           methyltransferase protein.
          Length = 683

 Score = 21.4 bits (43), Expect = 8.2
 Identities = 6/12 (50%), Positives = 10/12 (83%)
 Frame = +2

Query: 197 SYLVKYGNWPIK 232
           +YL+K+ NW +K
Sbjct: 260 TYLIKWKNWDLK 271


>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 21.4 bits (43), Expect = 8.2
 Identities = 8/20 (40%), Positives = 10/20 (50%)
 Frame = -1

Query: 460 HHPGCCPIPNGVSPTTENPH 401
           H PG  P   G  P + +PH
Sbjct: 300 HSPGVYPSTAGFLPPSYHPH 319


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 190,493
Number of Sequences: 438
Number of extensions: 4019
Number of successful extensions: 5
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20708550
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)