Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060427.seq
         (682 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g02490.1 68415.m00188 hydroxyproline-rich glycoprotein family...    28   5.0  
At2g29600.1 68415.m03594 kelch repeat-containing F-box family pr...    28   6.6  
At5g53440.1 68418.m06641 expressed protein                             27   8.7  
At3g06170.1 68416.m00709 TMS membrane family protein / tumour di...    27   8.7  
At2g31970.1 68415.m03906 DNA repair-recombination protein (RAD50...    27   8.7  
At1g23340.2 68414.m02919 expressed protein  similar to At1g70550...    27   8.7  
At1g23340.1 68414.m02918 expressed protein  similar to At1g70550...    27   8.7  

>At2g02490.1 68415.m00188 hydroxyproline-rich glycoprotein family
           protein related to LENOD2 [Lupinus luteus]
           gi|296830|emb|CAA39050;  and genefinder
          Length = 302

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 20/64 (31%), Positives = 32/64 (50%), Gaps = 3/64 (4%)
 Frame = -1

Query: 463 HHHPGCCPIPNGVSPTTENPHSSVGLA*NESSQIKSIG-ALPLSLKISDAMES--TMSAA 293
           + +PG  PIP+ VSP+  +P     ++ N+   I  I   +P SLK      +  +M+  
Sbjct: 129 NQYPGVFPIPHPVSPSPGHPPHQNEISVNQYPHILPISHPVPPSLKHPPHQNAKISMNQY 188

Query: 292 VCVF 281
            CVF
Sbjct: 189 PCVF 192


>At2g29600.1 68415.m03594 kelch repeat-containing F-box family
           protein similar to SKP1 interacting partner 6
           [Arabidopsis thaliana] GI:10716957; contains Pfam
           profiles PF01344: Kelch motif, PF00646: F-box domain
          Length = 415

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 17/55 (30%), Positives = 27/55 (49%), Gaps = 3/55 (5%)
 Frame = +1

Query: 97  TEYQGTMDILGRSLKPEKTDW--SVNT-CREISLNLKLPGEIWQLAHQETIFNRF 252
           T + G + ILG      + D+   VN  C E++L  +  GEIW      ++ N+F
Sbjct: 347 TNFGGKLMILGCYQSQARFDYYGEVNVWCVEVALERREDGEIWGKVQSLSLVNKF 401


>At5g53440.1 68418.m06641 expressed protein
          Length = 1181

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 16/47 (34%), Positives = 22/47 (46%), Gaps = 1/47 (2%)
 Frame = +3

Query: 60  HEASMGRTWDRRDRVPRDHGHSREISQAR-KNRLEC*YMSGDQFKSE 197
           H+    R WDR     RD  H R+ +  R K+R    Y  G + KS+
Sbjct: 353 HDRYHDRDWDRDRSRDRDRDHERDRTHDREKDRSRDYYHDGKRSKSD 399


>At3g06170.1 68416.m00709 TMS membrane family protein / tumour
           differentially expressed (TDE) family protein contains
           Pfam domain, PF03348: TMS membrane protein/tumour
           differentially expressed protein (TDE)
          Length = 409

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 10/16 (62%), Positives = 13/16 (81%)
 Frame = +1

Query: 394 LRSVGSPLLEKLHWVS 441
           LR  G+PLLEKL W++
Sbjct: 47  LRETGAPLLEKLPWIN 62


>At2g31970.1 68415.m03906 DNA repair-recombination protein (RAD50)
           identical to DNA repair-recombination protein GI:7110148
           from [Arabidopsis thaliana]
          Length = 1316

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 13/42 (30%), Positives = 24/42 (57%)
 Frame = +3

Query: 240 LQQISTFYATGYVPNTHTAADIVLSMASLIFKDKGKAPIDLI 365
           +Q I   Y  G VP+T  + ++VL++ + I    G+  +DL+
Sbjct: 372 IQNIFFHYNLGNVPSTPFSTEVVLNLTNRIKSRLGELEMDLL 413


>At1g23340.2 68414.m02919 expressed protein  similar to At1g70550,
           At1g10750 contains Pfam profile PF03080: Arabidopsis
           proteins of unknown function
          Length = 409

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 12/32 (37%), Positives = 19/32 (59%)
 Frame = +2

Query: 209 KYGNWPIKKPSSTDFYILRYWVCSKYTHSRRH 304
           K+G+W ++  S T   ++ YW  S +TH R H
Sbjct: 287 KHGHWWLQFGSGT---LVGYWPVSLFTHLREH 315


>At1g23340.1 68414.m02918 expressed protein  similar to At1g70550,
           At1g10750 contains Pfam profile PF03080: Arabidopsis
           proteins of unknown function
          Length = 409

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 12/32 (37%), Positives = 19/32 (59%)
 Frame = +2

Query: 209 KYGNWPIKKPSSTDFYILRYWVCSKYTHSRRH 304
           K+G+W ++  S T   ++ YW  S +TH R H
Sbjct: 287 KHGHWWLQFGSGT---LVGYWPVSLFTHLREH 315


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,997,807
Number of Sequences: 28952
Number of extensions: 311866
Number of successful extensions: 762
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 745
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 762
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1438152744
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)