Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV060426.seq
(676 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g61210.1 68414.m06897 WD-40 repeat family protein / katanin p... 93 2e-19
At5g23430.2 68418.m02749 transducin family protein / WD-40 repea... 92 3e-19
At5g23430.1 68418.m02748 transducin family protein / WD-40 repea... 92 3e-19
At5g08390.1 68418.m00988 transducin family protein / WD-40 repea... 89 3e-18
At1g11160.1 68414.m01278 WD-40 repeat family protein / katanin p... 64 1e-10
At1g71840.1 68414.m08302 transducin family protein / WD-40 repea... 49 2e-06
At3g15980.3 68416.m02022 coatomer protein complex, subunit beta ... 48 8e-06
At3g15980.2 68416.m02021 coatomer protein complex, subunit beta ... 48 8e-06
At3g15980.1 68416.m02020 coatomer protein complex, subunit beta ... 48 8e-06
At1g52360.1 68414.m05909 coatomer protein complex, subunit beta ... 48 8e-06
At4g15900.1 68417.m02416 PP1/PP2A phosphatases pleiotropic regul... 45 5e-05
At5g67320.1 68418.m08490 WD-40 repeat family protein strong simi... 44 7e-05
At3g49660.1 68416.m05427 transducin family protein / WD-40 repea... 44 7e-05
At3g15880.2 68416.m02009 WD-40 repeat family protein contains Pf... 44 7e-05
At3g15880.1 68416.m02008 WD-40 repeat family protein contains Pf... 44 7e-05
At1g15440.2 68414.m01856 transducin family protein / WD-40 repea... 44 9e-05
At1g15440.1 68414.m01855 transducin family protein / WD-40 repea... 44 9e-05
At3g16650.1 68416.m02128 PP1/PP2A phosphatases pleiotropic regul... 43 2e-04
At2g21390.1 68415.m02546 coatomer protein complex, subunit alpha... 42 3e-04
At1g79990.1 68414.m09356 coatomer protein complex, subunit beta ... 42 3e-04
At4g18905.1 68417.m02787 transducin family protein / WD-40 repea... 42 4e-04
At4g18900.1 68417.m02786 transducin family protein / WD-40 repea... 42 4e-04
At1g62020.1 68414.m06995 coatomer protein complex, subunit alpha... 42 4e-04
At5g10940.1 68418.m01269 transducin family protein / WD-40 repea... 41 7e-04
At4g05410.1 68417.m00823 transducin family protein / WD-40 repea... 41 7e-04
At5g16750.1 68418.m01961 transducin family protein / WD-40 repea... 40 0.002
At5g56130.1 68418.m07002 transducin family protein / WD-40 repea... 40 0.002
At5g50120.1 68418.m06207 transducin family protein / WD-40 repea... 40 0.002
At5g13840.1 68418.m01618 WD-40 repeat family protein contains 6 ... 40 0.002
At5g02430.1 68418.m00167 WD-40 repeat family protein contains 6 ... 40 0.002
At5g49200.1 68418.m06089 WD-40 repeat family protein / zfwd4 pro... 39 0.003
At4g02730.1 68417.m00372 transducin family protein / WD-40 repea... 39 0.003
At3g18950.1 68416.m02405 transducin family protein / WD-40 repea... 39 0.004
At2g47990.1 68415.m06006 transducin family protein / WD-40 repea... 39 0.004
At1g80490.2 68414.m09430 WD-40 repeat family protein contains 9 ... 39 0.004
At1g80490.1 68414.m09429 WD-40 repeat family protein contains 9 ... 39 0.004
At1g49450.1 68414.m05543 transducin family protein / WD-40 repea... 39 0.004
At4g34460.3 68417.m04900 guanine nucleotide-binding protein beta... 38 0.005
At4g34460.2 68417.m04898 guanine nucleotide-binding protein beta... 38 0.005
At4g34460.1 68417.m04899 guanine nucleotide-binding protein beta... 38 0.005
At4g34380.1 68417.m04884 transducin family protein / WD-40 repea... 38 0.005
At2g22040.1 68415.m02617 transducin family protein / WD-40 repea... 38 0.005
At5g05970.1 68418.m00661 transducin family protein / WD-40 repea... 38 0.006
At3g21540.1 68416.m02717 transducin family protein / WD-40 repea... 38 0.006
At2g32700.5 68415.m04001 WD-40 repeat family protein contains 7 ... 38 0.006
At2g32700.4 68415.m04000 WD-40 repeat family protein contains 7 ... 38 0.006
At2g32700.3 68415.m03999 WD-40 repeat family protein contains 7 ... 38 0.006
At2g32700.2 68415.m03998 WD-40 repeat family protein contains 7 ... 38 0.006
At2g32700.1 68415.m03997 WD-40 repeat family protein contains 7 ... 38 0.006
At2g47410.1 68415.m05917 transducin family protein / WD-40 repea... 38 0.008
At2g16405.1 68415.m01878 transducin family protein / WD-40 repea... 38 0.008
At1g47610.1 68414.m05288 transducin family protein / WD-40 repea... 38 0.008
At1g15750.2 68414.m01890 WD-40 repeat family protein contains 10... 37 0.011
At1g15750.1 68414.m01889 WD-40 repeat family protein contains 10... 37 0.011
At4g32551.1 68417.m04633 WD-40 repeat family protein (LEUNIG) co... 37 0.014
At3g51930.1 68416.m05696 transducin family protein / WD-40 repea... 37 0.014
At3g27640.1 68416.m03452 transducin family protein / WD-40 repea... 37 0.014
At5g64730.1 68418.m08140 transducin family protein / WD-40 repea... 36 0.019
At4g35370.1 68417.m05025 transducin family protein / WD-40 repea... 36 0.019
At2g45540.1 68415.m05663 WD-40 repeat family protein / beige-rel... 36 0.019
At2g05720.1 68415.m00613 transducin family protein / WD-40 repea... 36 0.019
At5g52820.1 68418.m06556 WD-40 repeat family protein / notchless... 36 0.025
At5g25150.1 68418.m02981 transducin family protein / WD-40 repea... 36 0.025
At2g43770.1 68415.m05441 transducin family protein / WD-40 repea... 36 0.025
At5g58230.1 68418.m07290 WD-40 repeat protein (MSI1) contains 6 ... 36 0.033
At2g41500.1 68415.m05127 WD-40 repeat family protein / small nuc... 36 0.033
At1g48870.1 68414.m05474 WD-40 repeat family protein contains Pf... 36 0.033
At5g43920.1 68418.m05372 transducin family protein / WD-40 repea... 35 0.043
At3g49180.1 68416.m05375 transducin family protein / WD-40 repea... 35 0.043
At2g37670.1 68415.m04620 WD-40 repeat family protein contains 6 ... 35 0.043
At1g10580.1 68414.m01192 transducin family protein / WD-40 repea... 35 0.043
At5g49430.1 68418.m06116 transducin family protein / WD-40 repea... 35 0.057
At2g46290.1 68415.m05758 eukaryotic translation initiation facto... 35 0.057
At5g27945.1 68418.m03364 transducin family protein / WD-40 repea... 34 0.075
At5g13480.1 68418.m01554 WD-40 repeat family protein similar to ... 34 0.075
At3g05090.2 68416.m00553 transducin family protein / WD-40 repea... 34 0.075
At3g05090.1 68416.m00552 transducin family protein / WD-40 repea... 34 0.075
At1g49040.1 68414.m05498 stomatal cytokinesis defective / SCD1 p... 34 0.075
At5g66240.2 68418.m08345 transducin family protein / WD-40 repea... 34 0.100
At5g66240.1 68418.m08344 transducin family protein / WD-40 repea... 34 0.100
At3g18060.1 68416.m02297 transducin family protein / WD-40 repea... 34 0.100
At2g46280.3 68415.m05757 eukaryotic translation initiation facto... 34 0.100
At2g46280.2 68415.m05756 eukaryotic translation initiation facto... 34 0.100
At2g46280.1 68415.m05755 eukaryotic translation initiation facto... 34 0.100
At1g64610.2 68414.m07324 WD-40 repeat family protein contains Pf... 34 0.100
At1g64610.1 68414.m07323 WD-40 repeat family protein contains Pf... 34 0.100
At1g24130.1 68414.m03044 transducin family protein / WD-40 repea... 34 0.100
At5g54200.1 68418.m06748 WD-40 repeat family protein contains Pf... 33 0.13
At4g00090.1 68417.m00009 transducin family protein / WD-40 repea... 33 0.13
At5g60940.2 68418.m07645 transducin family protein / WD-40 repea... 33 0.17
At5g60940.1 68418.m07644 transducin family protein / WD-40 repea... 33 0.17
At5g50230.1 68418.m06221 transducin family protein / WD-40 repea... 33 0.17
At2g26490.1 68415.m03178 transducin family protein / WD-40 repea... 33 0.17
At1g48630.1 68414.m05440 guanine nucleotide-binding family prote... 33 0.17
At1g24530.1 68414.m03088 transducin family protein / WD-40 repea... 33 0.17
At1g04510.1 68414.m00442 transducin family protein / WD-40 repea... 33 0.17
At5g40880.1 68418.m04964 WD-40 repeat family protein / zfwd3 pro... 33 0.23
At5g24320.2 68418.m02866 WD-40 repeat family protein contains Pf... 33 0.23
At5g24320.1 68418.m02865 WD-40 repeat family protein contains Pf... 33 0.23
At4g03020.1 68417.m00410 transducin family protein / WD-40 repea... 33 0.23
At3g15470.1 68416.m01962 WD-40 repeat family protein contains Pf... 33 0.23
At1g18080.1 68414.m02238 WD-40 repeat family protein / auxin-dep... 33 0.23
At5g53500.1 68418.m06649 WD-40 repeat family protein contains Pf... 32 0.30
At4g29830.1 68417.m04246 transducin family protein / WD-40 repea... 32 0.30
At4g22910.1 68417.m03309 WD-40 repeat family protein contains 6 ... 32 0.30
At4g11110.1 68417.m01803 WD-40 repeat family protein / phytochro... 32 0.30
At3g18140.1 68416.m02306 transducin family protein / WD-40 repea... 32 0.30
At2g33340.2 68415.m04087 transducin family protein / WD-40 repea... 32 0.30
At2g33340.1 68415.m04086 transducin family protein / WD-40 repea... 32 0.30
At5g27570.1 68418.m03302 WD-40 repeat family protein contains 5 ... 32 0.40
At5g26900.1 68418.m03208 WD-40 repeat family protein contains 5 ... 32 0.40
At4g28450.1 68417.m04071 transducin family protein / WD-40 repea... 32 0.40
At1g04140.2 68414.m00404 transducin family protein / WD-40 repea... 32 0.40
At1g04140.1 68414.m00403 transducin family protein / WD-40 repea... 32 0.40
At5g27080.1 68418.m03231 WD-40 repeat family protein contains 5 ... 31 0.53
At5g11240.1 68418.m01313 transducin family protein / WD-40 repea... 31 0.53
At3g18130.1 68416.m02305 guanine nucleotide-binding family prote... 31 0.53
At3g15610.1 68416.m01980 transducin family protein / WD-40 repea... 31 0.53
At3g04470.1 68416.m00474 expressed protein 31 0.53
At5g23730.1 68418.m02782 transducin family protein / WD-40 repea... 31 0.70
At3g50390.1 68416.m05512 transducin family protein / WD-40 repea... 31 0.70
At3g24210.1 68416.m03038 ankyrin repeat family protein contains ... 31 0.70
At4g04940.1 68417.m00718 transducin family protein / WD-40 repea... 31 0.93
At3g08850.1 68416.m01029 transducin family protein / WD-40 repea... 31 0.93
At5g24520.3 68418.m02893 transparent testa glabra 1 protein (TTG... 30 1.2
At5g24520.2 68418.m02892 transparent testa glabra 1 protein (TTG... 30 1.2
At5g24520.1 68418.m02891 transparent testa glabra 1 protein (TTG... 30 1.2
At5g08560.1 68418.m01018 transducin family protein / WD-40 repea... 30 1.2
At4g38480.1 68417.m05438 transducin family protein / WD-40 repea... 30 1.2
At3g26480.1 68416.m03301 transducin family protein / WD-40 repea... 30 1.2
At2g37160.1 68415.m04559 transducin family protein / WD-40 repea... 30 1.2
At1g15470.1 68414.m01860 transducin family protein / WD-40 repea... 30 1.2
At5g43930.1 68418.m05374 transducin family protein / WD-40 repea... 30 1.6
At4g35140.1 68417.m04996 transducin family protein / WD-40 repea... 30 1.6
At4g35050.1 68417.m04974 WD-40 repeat protein (MSI3) contains 5 ... 30 1.6
At3g42660.1 68416.m04436 transducin family protein / WD-40 repea... 30 1.6
At3g19590.1 68416.m02484 WD-40 repeat family protein / mitotic c... 30 1.6
At2g16780.1 68415.m01924 WD-40 repeat protein (MSI2) contains 5 ... 29 2.1
At1g80670.1 68414.m09466 transducin family protein / WD-40 repea... 29 2.1
At1g12910.1 68414.m01499 flower pigmentation protein (AN11) cont... 29 2.1
At4g11920.1 68417.m01895 WD-40 repeat family protein contains 6 ... 29 2.8
At3g26640.1 68416.m03329 transducin family protein / WD-40 repea... 29 2.8
At2g19540.1 68415.m02283 transducin family protein / WD-40 repea... 29 2.8
At1g80710.1 68414.m09470 transducin family protein / WD-40 repea... 29 2.8
At1g73720.1 68414.m08536 transducin family protein / WD-40 repea... 29 2.8
At1g19750.1 68414.m02469 transducin family protein / WD-40 repea... 29 2.8
At5g42010.1 68418.m05114 WD-40 repeat family protein contains Pf... 29 3.8
At4g29730.1 68417.m04233 WD-40 repeat family protein contains 5 ... 29 3.8
At2g32950.1 68415.m04039 COP1 regulatory protein photomorphogene... 29 3.8
At1g27470.1 68414.m03349 transducin-related / WD-40 repeat prote... 29 3.8
At4g07410.1 68417.m01136 transducin family protein / WD-40 repea... 28 5.0
At3g53390.1 68416.m05892 transducin family protein / WD-40 repea... 28 5.0
At3g26410.1 68416.m03293 expressed protein 28 5.0
At2g19430.1 68415.m02267 transducin family protein / WD-40 repea... 28 5.0
At1g65580.1 68414.m07439 endonuclease/exonuclease/phosphatase fa... 28 5.0
At1g62390.1 68414.m07039 octicosapeptide/Phox/Bem1p (PB1) domain... 28 5.0
At1g62050.1 68414.m06999 ankyrin repeat protein-related contains... 28 5.0
At1g27840.1 68414.m03412 transducin family protein / WD-40 repea... 28 5.0
At5g18065.1 68418.m02118 expressed protein 28 6.6
At5g01770.1 68418.m00096 transducin family protein / WD-40 repea... 28 6.6
At4g25440.1 68417.m03663 WD-40 repeat family protein / zfwd1 pro... 28 6.6
At4g21530.1 68417.m03111 transducin family protein / WD-40 repea... 28 6.6
At3g45620.1 68416.m04927 transducin family protein / WD-40 repea... 28 6.6
At2g19520.1 68415.m02281 WD-40 repeat protein (MSI4) contains 6 ... 28 6.6
At1g49910.1 68414.m05597 WD-40 repeat family protein / mitotic c... 28 6.6
At1g04780.1 68414.m00474 ankyrin repeat family protein contains ... 28 6.6
At5g45760.2 68418.m05626 transducin family protein / WD-40 repea... 27 8.7
At5g45760.1 68418.m05625 transducin family protein / WD-40 repea... 27 8.7
At1g18830.1 68414.m02345 transducin family protein / WD-40 repea... 27 8.7
At1g03110.1 68414.m00288 transducin family protein / WD-40 repea... 27 8.7
>At1g61210.1 68414.m06897 WD-40 repeat family protein / katanin p80
subunit, putative contains 5 WD-40 repeats (PF00400);
similar to katanin p80 subunit (GI:3005601)
[Strongylocentrotus purpuratus]
Length = 1180
Score = 92.7 bits (220), Expect = 2e-19
Identities = 43/75 (57%), Positives = 58/75 (77%), Gaps = 1/75 (1%)
Frame = +1
Query: 286 RRSWKLQ-FVAHKANVNCLAMGHKSNQVLATGGDDKKVNLWAIGRQSCLMSLSGHTTPVE 462
+R +KLQ F+AH ANVNCL++G K++++ TGGDD KVNLWAIG+ + LMSL GHT+ V+
Sbjct: 3 KRGYKLQEFLAHSANVNCLSIGKKTSRLFITGGDDYKVNLWAIGKPTSLMSLCGHTSAVD 62
Query: 463 CVCFGHSEDLVCAGS 507
V F +E LV AG+
Sbjct: 63 SVAFDSAEVLVLAGA 77
Score = 64.1 bits (149), Expect = 8e-11
Identities = 25/60 (41%), Positives = 41/60 (68%)
Frame = +3
Query: 471 FWSFRRLSMCWFTTGALKIWDLEAAKLLRTFTGHXGAIKCMDFHPYGDYLTTGSCDSNVK 650
F S L + ++G +K+WD+E AK++R FTGH ++FHP+G++L +GS D+N+K
Sbjct: 66 FDSAEVLVLAGASSGVIKLWDVEEAKMVRAFTGHRSNCSAVEFHPFGEFLASGSSDANLK 125
Score = 53.2 bits (122), Expect = 2e-07
Identities = 26/54 (48%), Positives = 30/54 (55%), Gaps = 4/54 (7%)
Frame = +3
Query: 501 WFTTGAL----KIWDLEAAKLLRTFTGHXGAIKCMDFHPYGDYLTTGSCDSNVK 650
W +G L K+WDL A KLL F H G I+ +DFHP L TGS D VK
Sbjct: 156 WVVSGGLDNVVKVWDLTAGKLLHEFKFHEGPIRSLDFHPLEFLLATGSADRTVK 209
Score = 38.7 bits (86), Expect = 0.004
Identities = 14/56 (25%), Positives = 29/56 (51%)
Frame = +1
Query: 307 FVAHKANVNCLAMGHKSNQVLATGGDDKKVNLWAIGRQSCLMSLSGHTTPVECVCF 474
F H++N + + H + LA+G D + +W I ++ C+ + GH+ + + F
Sbjct: 96 FTGHRSNCSAVEF-HPFGEFLASGSSDANLKIWDIRKKGCIQTYKGHSRGISTIRF 150
Score = 38.3 bits (85), Expect = 0.005
Identities = 19/65 (29%), Positives = 29/65 (44%)
Frame = +3
Query: 456 CRMCVFWSFRRLSMCWFTTGALKIWDLEAAKLLRTFTGHXGAIKCMDFHPYGDYLTTGSC 635
C F F + LKIWD+ ++T+ GH I + F P G ++ +G
Sbjct: 103 CSAVEFHPFGEFLASGSSDANLKIWDIRKKGCIQTYKGHSRGISTIRFTPDGRWVVSGGL 162
Query: 636 DSNVK 650
D+ VK
Sbjct: 163 DNVVK 167
Score = 31.9 bits (69), Expect = 0.40
Identities = 21/74 (28%), Positives = 30/74 (40%)
Frame = +3
Query: 420 KLFNES*WTYNPCRMCVFWSFRRLSMCWFTTGALKIWDLEAAKLLRTFTGHXGAIKCMDF 599
KL +E + P R F L +K WDLE +L+ + ++ + F
Sbjct: 175 KLLHEFKFHEGPIRSLDFHPLEFLLATGSADRTVKFWDLETFELIGSTRPEATGVRSIKF 234
Query: 600 HPYGDYLTTGSCDS 641
HP G L G DS
Sbjct: 235 HPDGRTLFCGLDDS 248
>At5g23430.2 68418.m02749 transducin family protein / WD-40 repeat
family protein contains 6 WD-40 repeats (PF00400);
katanin p80 subunit (GI:3005601) [Strongylocentrotus
purpuratus]
Length = 836
Score = 92.3 bits (219), Expect = 3e-19
Identities = 43/76 (56%), Positives = 59/76 (77%), Gaps = 1/76 (1%)
Frame = +1
Query: 283 TRRSWKLQ-FVAHKANVNCLAMGHKSNQVLATGGDDKKVNLWAIGRQSCLMSLSGHTTPV 459
T+R++KLQ FVAH A VNCL +G KS++VL TGG+D KVNLWAIG+ + ++SL GH++ +
Sbjct: 3 TKRAYKLQEFVAHSAAVNCLKIGRKSSRVLVTGGEDHKVNLWAIGKPNAILSLYGHSSGI 62
Query: 460 ECVCFGHSEDLVCAGS 507
+ V F SE LV AG+
Sbjct: 63 DSVTFDASEVLVAAGA 78
Score = 62.5 bits (145), Expect = 2e-10
Identities = 23/47 (48%), Positives = 35/47 (74%)
Frame = +3
Query: 510 TGALKIWDLEAAKLLRTFTGHXGAIKCMDFHPYGDYLTTGSCDSNVK 650
+G +K+WDLE AK++RT TGH +DFHP+G++ +GS D+N+K
Sbjct: 80 SGTIKLWDLEEAKIVRTLTGHRSNCISVDFHPFGEFFASGSLDTNLK 126
Score = 53.6 bits (123), Expect = 1e-07
Identities = 23/44 (52%), Positives = 28/44 (63%)
Frame = +3
Query: 519 LKIWDLEAAKLLRTFTGHXGAIKCMDFHPYGDYLTTGSCDSNVK 650
+K+WDL A KLL F H G I+ +DFHP+ L TGS D VK
Sbjct: 167 VKVWDLTAGKLLTEFKSHEGQIQSLDFHPHEFLLATGSADRTVK 210
Score = 36.3 bits (80), Expect = 0.019
Identities = 15/44 (34%), Positives = 24/44 (54%)
Frame = +3
Query: 519 LKIWDLEAAKLLRTFTGHXGAIKCMDFHPYGDYLTTGSCDSNVK 650
LKIWD+ + T+ GH + + F P G ++ +G D+ VK
Sbjct: 125 LKIWDIRKKGCIHTYKGHTRGVNVLRFTPDGRWVVSGGEDNIVK 168
Score = 34.7 bits (76), Expect = 0.057
Identities = 16/61 (26%), Positives = 30/61 (49%), Gaps = 1/61 (1%)
Frame = +1
Query: 331 NCLAMG-HKSNQVLATGGDDKKVNLWAIGRQSCLMSLSGHTTPVECVCFGHSEDLVCAGS 507
NC+++ H + A+G D + +W I ++ C+ + GHT V + F V +G
Sbjct: 103 NCISVDFHPFGEFFASGSLDTNLKIWDIRKKGCIHTYKGHTRGVNVLRFTPDGRWVVSGG 162
Query: 508 Q 510
+
Sbjct: 163 E 163
Score = 34.7 bits (76), Expect = 0.057
Identities = 24/99 (24%), Positives = 39/99 (39%)
Frame = +1
Query: 256 NNLLITMEATRRSWKLQFVAHKANVNCLAMGHKSNQVLATGGDDKKVNLWAIGRQSCLMS 435
+N++ + T +F +H+ + L H +LATG D+ V W + + S
Sbjct: 164 DNIVKVWDLTAGKLLTEFKSHEGQIQSLDF-HPHEFLLATGSADRTVKFWDLETFELIGS 222
Query: 436 LSGHTTPVECVCFGHSEDLVCAGSQLVP*KFGIWKLLNC 552
T V C+ F V G Q K W+ + C
Sbjct: 223 GGPETAGVRCLSFNPDGKTVLCGLQ-ESLKIFSWEPIRC 260
Score = 29.9 bits (64), Expect = 1.6
Identities = 12/41 (29%), Positives = 22/41 (53%)
Frame = +3
Query: 519 LKIWDLEAAKLLRTFTGHXGAIKCMDFHPYGDYLTTGSCDS 641
+K WDLE +L+ + ++C+ F+P G + G +S
Sbjct: 209 VKFWDLETFELIGSGGPETAGVRCLSFNPDGKTVLCGLQES 249
Score = 28.7 bits (61), Expect = 3.8
Identities = 17/67 (25%), Positives = 27/67 (40%)
Frame = +1
Query: 307 FVAHKANVNCLAMGHKSNQVLATGGDDKKVNLWAIGRQSCLMSLSGHTTPVECVCFGHSE 486
+ H VN L V++ GG+D V +W + L H ++ + F E
Sbjct: 139 YKGHTRGVNVLRFTPDGRWVVS-GGEDNIVKVWDLTAGKLLTEFKSHEGQIQSLDFHPHE 197
Query: 487 DLVCAGS 507
L+ GS
Sbjct: 198 FLLATGS 204
>At5g23430.1 68418.m02748 transducin family protein / WD-40 repeat
family protein contains 6 WD-40 repeats (PF00400);
katanin p80 subunit (GI:3005601) [Strongylocentrotus
purpuratus]
Length = 837
Score = 92.3 bits (219), Expect = 3e-19
Identities = 43/76 (56%), Positives = 59/76 (77%), Gaps = 1/76 (1%)
Frame = +1
Query: 283 TRRSWKLQ-FVAHKANVNCLAMGHKSNQVLATGGDDKKVNLWAIGRQSCLMSLSGHTTPV 459
T+R++KLQ FVAH A VNCL +G KS++VL TGG+D KVNLWAIG+ + ++SL GH++ +
Sbjct: 3 TKRAYKLQEFVAHSAAVNCLKIGRKSSRVLVTGGEDHKVNLWAIGKPNAILSLYGHSSGI 62
Query: 460 ECVCFGHSEDLVCAGS 507
+ V F SE LV AG+
Sbjct: 63 DSVTFDASEVLVAAGA 78
Score = 62.5 bits (145), Expect = 2e-10
Identities = 23/47 (48%), Positives = 35/47 (74%)
Frame = +3
Query: 510 TGALKIWDLEAAKLLRTFTGHXGAIKCMDFHPYGDYLTTGSCDSNVK 650
+G +K+WDLE AK++RT TGH +DFHP+G++ +GS D+N+K
Sbjct: 80 SGTIKLWDLEEAKIVRTLTGHRSNCISVDFHPFGEFFASGSLDTNLK 126
Score = 53.6 bits (123), Expect = 1e-07
Identities = 23/44 (52%), Positives = 28/44 (63%)
Frame = +3
Query: 519 LKIWDLEAAKLLRTFTGHXGAIKCMDFHPYGDYLTTGSCDSNVK 650
+K+WDL A KLL F H G I+ +DFHP+ L TGS D VK
Sbjct: 167 VKVWDLTAGKLLTEFKSHEGQIQSLDFHPHEFLLATGSADRTVK 210
Score = 36.3 bits (80), Expect = 0.019
Identities = 15/44 (34%), Positives = 24/44 (54%)
Frame = +3
Query: 519 LKIWDLEAAKLLRTFTGHXGAIKCMDFHPYGDYLTTGSCDSNVK 650
LKIWD+ + T+ GH + + F P G ++ +G D+ VK
Sbjct: 125 LKIWDIRKKGCIHTYKGHTRGVNVLRFTPDGRWVVSGGEDNIVK 168
Score = 34.7 bits (76), Expect = 0.057
Identities = 16/61 (26%), Positives = 30/61 (49%), Gaps = 1/61 (1%)
Frame = +1
Query: 331 NCLAMG-HKSNQVLATGGDDKKVNLWAIGRQSCLMSLSGHTTPVECVCFGHSEDLVCAGS 507
NC+++ H + A+G D + +W I ++ C+ + GHT V + F V +G
Sbjct: 103 NCISVDFHPFGEFFASGSLDTNLKIWDIRKKGCIHTYKGHTRGVNVLRFTPDGRWVVSGG 162
Query: 508 Q 510
+
Sbjct: 163 E 163
Score = 34.7 bits (76), Expect = 0.057
Identities = 24/99 (24%), Positives = 39/99 (39%)
Frame = +1
Query: 256 NNLLITMEATRRSWKLQFVAHKANVNCLAMGHKSNQVLATGGDDKKVNLWAIGRQSCLMS 435
+N++ + T +F +H+ + L H +LATG D+ V W + + S
Sbjct: 164 DNIVKVWDLTAGKLLTEFKSHEGQIQSLDF-HPHEFLLATGSADRTVKFWDLETFELIGS 222
Query: 436 LSGHTTPVECVCFGHSEDLVCAGSQLVP*KFGIWKLLNC 552
T V C+ F V G Q K W+ + C
Sbjct: 223 GGPETAGVRCLSFNPDGKTVLCGLQ-ESLKIFSWEPIRC 260
Score = 29.9 bits (64), Expect = 1.6
Identities = 12/41 (29%), Positives = 22/41 (53%)
Frame = +3
Query: 519 LKIWDLEAAKLLRTFTGHXGAIKCMDFHPYGDYLTTGSCDS 641
+K WDLE +L+ + ++C+ F+P G + G +S
Sbjct: 209 VKFWDLETFELIGSGGPETAGVRCLSFNPDGKTVLCGLQES 249
Score = 28.7 bits (61), Expect = 3.8
Identities = 17/67 (25%), Positives = 27/67 (40%)
Frame = +1
Query: 307 FVAHKANVNCLAMGHKSNQVLATGGDDKKVNLWAIGRQSCLMSLSGHTTPVECVCFGHSE 486
+ H VN L V++ GG+D V +W + L H ++ + F E
Sbjct: 139 YKGHTRGVNVLRFTPDGRWVVS-GGEDNIVKVWDLTAGKLLTEFKSHEGQIQSLDFHPHE 197
Query: 487 DLVCAGS 507
L+ GS
Sbjct: 198 FLLATGS 204
>At5g08390.1 68418.m00988 transducin family protein / WD-40 repeat
family protein similar to katanin p80 subunit
[Strongylocentrotus purpuratus] GI:3005601; contains
Pfam profile PF00400: WD domain, G-beta repeat
Length = 871
Score = 89.0 bits (211), Expect = 3e-18
Identities = 54/132 (40%), Positives = 79/132 (59%), Gaps = 21/132 (15%)
Frame = +1
Query: 175 YSQILFINIVTQTL---LVLKLEILFMEFSNNL-------LITMEATRRSWKL------- 303
YS+ILF+N+ + + LV L + F NL ++ T+R++KL
Sbjct: 40 YSKILFLNLHSFPIDLNLVSVLRLAFWVLLKNLDGRRCKGFVSAMNTKRAYKLRILFSLI 99
Query: 304 ----QFVAHKANVNCLAMGHKSNQVLATGGDDKKVNLWAIGRQSCLMSLSGHTTPVECVC 471
+FVAH A VNCL +G KS++VL TGG+D KVNLWAIG+ + ++SL GH++ ++ V
Sbjct: 100 SSFREFVAHSAAVNCLKIGRKSSRVLVTGGEDHKVNLWAIGKPNAILSLYGHSSGIDSVT 159
Query: 472 FGHSEDLVCAGS 507
F SE LV AG+
Sbjct: 160 FDASEGLVAAGA 171
Score = 60.5 bits (140), Expect = 1e-09
Identities = 22/47 (46%), Positives = 35/47 (74%)
Frame = +3
Query: 510 TGALKIWDLEAAKLLRTFTGHXGAIKCMDFHPYGDYLTTGSCDSNVK 650
+G +K+WDLE AK++RT TGH ++FHP+G++ +GS D+N+K
Sbjct: 173 SGTIKLWDLEEAKVVRTLTGHRSNCVSVNFHPFGEFFASGSLDTNLK 219
Score = 54.8 bits (126), Expect = 5e-08
Identities = 25/54 (46%), Positives = 31/54 (57%), Gaps = 4/54 (7%)
Frame = +3
Query: 501 WFTTGA----LKIWDLEAAKLLRTFTGHXGAIKCMDFHPYGDYLTTGSCDSNVK 650
W +G +K+WDL A KLL F H G I+ +DFHP+ L TGS D VK
Sbjct: 250 WIVSGGEDNVVKVWDLTAGKLLHEFKSHEGKIQSLDFHPHEFLLATGSADKTVK 303
Score = 36.7 bits (81), Expect = 0.014
Identities = 15/44 (34%), Positives = 24/44 (54%)
Frame = +3
Query: 519 LKIWDLEAAKLLRTFTGHXGAIKCMDFHPYGDYLTTGSCDSNVK 650
LKIWD+ + T+ GH + + F P G ++ +G D+ VK
Sbjct: 218 LKIWDIRKKGCIHTYKGHTRGVNVLRFTPDGRWIVSGGEDNVVK 261
Score = 36.3 bits (80), Expect = 0.019
Identities = 26/99 (26%), Positives = 40/99 (40%)
Frame = +1
Query: 256 NNLLITMEATRRSWKLQFVAHKANVNCLAMGHKSNQVLATGGDDKKVNLWAIGRQSCLMS 435
+N++ + T +F +H+ + L H +LATG DK V W + + S
Sbjct: 257 DNVVKVWDLTAGKLLHEFKSHEGKIQSLDF-HPHEFLLATGSADKTVKFWDLETFELIGS 315
Query: 436 LSGHTTPVECVCFGHSEDLVCAGSQLVP*KFGIWKLLNC 552
TT V C+ F V G Q K W+ + C
Sbjct: 316 GGTETTGVRCLTFNPDGKSVLCGLQ-ESLKIFSWEPIRC 353
Score = 34.3 bits (75), Expect = 0.075
Identities = 15/61 (24%), Positives = 30/61 (49%), Gaps = 1/61 (1%)
Frame = +1
Query: 331 NCLAMG-HKSNQVLATGGDDKKVNLWAIGRQSCLMSLSGHTTPVECVCFGHSEDLVCAGS 507
NC+++ H + A+G D + +W I ++ C+ + GHT V + F + +G
Sbjct: 196 NCVSVNFHPFGEFFASGSLDTNLKIWDIRKKGCIHTYKGHTRGVNVLRFTPDGRWIVSGG 255
Query: 508 Q 510
+
Sbjct: 256 E 256
Score = 28.7 bits (61), Expect = 3.8
Identities = 12/41 (29%), Positives = 22/41 (53%)
Frame = +3
Query: 519 LKIWDLEAAKLLRTFTGHXGAIKCMDFHPYGDYLTTGSCDS 641
+K WDLE +L+ + ++C+ F+P G + G +S
Sbjct: 302 VKFWDLETFELIGSGGTETTGVRCLTFNPDGKSVLCGLQES 342
Score = 28.3 bits (60), Expect = 5.0
Identities = 16/67 (23%), Positives = 27/67 (40%)
Frame = +1
Query: 307 FVAHKANVNCLAMGHKSNQVLATGGDDKKVNLWAIGRQSCLMSLSGHTTPVECVCFGHSE 486
+ H VN L +++ GG+D V +W + L H ++ + F E
Sbjct: 232 YKGHTRGVNVLRFTPDGRWIVS-GGEDNVVKVWDLTAGKLLHEFKSHEGKIQSLDFHPHE 290
Query: 487 DLVCAGS 507
L+ GS
Sbjct: 291 FLLATGS 297
>At1g11160.1 68414.m01278 WD-40 repeat family protein / katanin p80
subunit, putative similar to contains 6 WD-40 repeats
(PF00400); katanin p80 subunit (GI:3005601)
[Strongylocentrotus purpuratus]
Length = 974
Score = 63.7 bits (148), Expect = 1e-10
Identities = 25/67 (37%), Positives = 43/67 (64%)
Frame = +3
Query: 450 NPCRMCVFWSFRRLSMCWFTTGALKIWDLEAAKLLRTFTGHXGAIKCMDFHPYGDYLTTG 629
+P F S L + ++G +K+WDLE +K++R FTGH ++FHP+G++L +G
Sbjct: 8 SPVDSVAFNSEEVLVLAGASSGVIKLWDLEESKMVRAFTGHRSNCSAVEFHPFGEFLASG 67
Query: 630 SCDSNVK 650
S D+N++
Sbjct: 68 SSDTNLR 74
Score = 53.2 bits (122), Expect = 2e-07
Identities = 26/54 (48%), Positives = 30/54 (55%), Gaps = 4/54 (7%)
Frame = +3
Query: 501 WFTTGAL----KIWDLEAAKLLRTFTGHXGAIKCMDFHPYGDYLTTGSCDSNVK 650
W +G L K+WDL A KLL F H G I+ +DFHP L TGS D VK
Sbjct: 105 WVVSGGLDNVVKVWDLTAGKLLHEFKCHEGPIRSLDFHPLEFLLATGSADRTVK 158
Score = 38.3 bits (85), Expect = 0.005
Identities = 16/66 (24%), Positives = 31/66 (46%)
Frame = +1
Query: 307 FVAHKANVNCLAMGHKSNQVLATGGDDKKVNLWAIGRQSCLMSLSGHTTPVECVCFGHSE 486
F H++N + + H + LA+G D + +W ++ C+ + GHT + + F
Sbjct: 45 FTGHRSNCSAVEF-HPFGEFLASGSSDTNLRVWDTRKKGCIQTYKGHTRGISTIEFSPDG 103
Query: 487 DLVCAG 504
V +G
Sbjct: 104 RWVVSG 109
Score = 37.1 bits (82), Expect = 0.011
Identities = 14/44 (31%), Positives = 25/44 (56%)
Frame = +3
Query: 519 LKIWDLEAAKLLRTFTGHXGAIKCMDFHPYGDYLTTGSCDSNVK 650
L++WD ++T+ GH I ++F P G ++ +G D+ VK
Sbjct: 73 LRVWDTRKKGCIQTYKGHTRGISTIEFSPDGRWVVSGGLDNVVK 116
Score = 33.5 bits (73), Expect = 0.13
Identities = 15/26 (57%), Positives = 18/26 (69%)
Frame = +1
Query: 430 MSLSGHTTPVECVCFGHSEDLVCAGS 507
MSL GHT+PV+ V F E LV AG+
Sbjct: 1 MSLCGHTSPVDSVAFNSEEVLVLAGA 26
Score = 31.5 bits (68), Expect = 0.53
Identities = 21/73 (28%), Positives = 28/73 (38%)
Frame = +3
Query: 420 KLFNES*WTYNPCRMCVFWSFRRLSMCWFTTGALKIWDLEAAKLLRTFTGHXGAIKCMDF 599
KL +E P R F L +K WDLE +L+ T ++ + F
Sbjct: 124 KLLHEFKCHEGPIRSLDFHPLEFLLATGSADRTVKFWDLETFELIGTTRPEATGVRAIAF 183
Query: 600 HPYGDYLTTGSCD 638
HP G L G D
Sbjct: 184 HPDGQTLFCGLDD 196
>At1g71840.1 68414.m08302 transducin family protein / WD-40 repeat
family protein contains Pfam profile:PF00560 Leucine
Rich Repeat (4 copies); Pfam profile:PF00069 Eukaryotic
protein kinase domain; Pfam profile:PF00400 WD domain,
G-beta repeat (7 copies)
Length = 407
Score = 49.2 bits (112), Expect = 2e-06
Identities = 23/66 (34%), Positives = 30/66 (45%)
Frame = +1
Query: 307 FVAHKANVNCLAMGHKSNQVLATGGDDKKVNLWAIGRQSCLMSLSGHTTPVECVCFGHSE 486
F HK + LA ++ATGG D K LW IG L GH V C+ F +
Sbjct: 66 FTGHKGELYALACSPTDATLVATGGGDDKAFLWKIGNGDWAAELPGHKDSVSCLAFSYDG 125
Query: 487 DLVCAG 504
L+ +G
Sbjct: 126 QLLASG 131
Score = 36.3 bits (80), Expect = 0.019
Identities = 22/72 (30%), Positives = 35/72 (48%)
Frame = +1
Query: 295 WKLQFVAHKANVNCLAMGHKSNQVLATGGDDKKVNLWAIGRQSCLMSLSGHTTPVECVCF 474
W + HK +V+CLA + Q+LA+GG D V ++ + L G +E V +
Sbjct: 105 WAAELPGHKDSVSCLAFSY-DGQLLASGGLDGVVQIFDASSGTLKCVLDGPGAGIEWVRW 163
Query: 475 GHSEDLVCAGSQ 510
+V AGS+
Sbjct: 164 HPRGHIVLAGSE 175
Score = 35.1 bits (77), Expect = 0.043
Identities = 15/44 (34%), Positives = 25/44 (56%)
Frame = +3
Query: 516 ALKIWDLEAAKLLRTFTGHXGAIKCMDFHPYGDYLTTGSCDSNV 647
+L +W+ + L F+GH + C DF P G + TGS D+++
Sbjct: 178 SLWMWNADKEAYLNMFSGHNLNVTCGDFTPDGKLICTGSDDASL 221
Score = 34.7 bits (76), Expect = 0.057
Identities = 15/53 (28%), Positives = 24/53 (45%)
Frame = +1
Query: 349 HKSNQVLATGGDDKKVNLWAIGRQSCLMSLSGHTTPVECVCFGHSEDLVCAGS 507
H ++ G +D + +W +++ L SGH V C F L+C GS
Sbjct: 164 HPRGHIVLAGSEDCSLWMWNADKEAYLNMFSGHNLNVTCGDFTPDGKLICTGS 216
Score = 32.3 bits (70), Expect = 0.30
Identities = 23/77 (29%), Positives = 35/77 (45%), Gaps = 1/77 (1%)
Frame = +1
Query: 316 HKANVNCLAMGHKSNQVLATGGDDKKVNLWAIGRQSCLMSLSGHTTPVECVCFGHSEDLV 495
H + CL + S+ ++ G D V++ I + SL+ HT VECV F S +
Sbjct: 241 HTEGLTCLDINSNSSLAIS-GSKDGSVHIVNIVTGKVVSSLNSHTDSVECVKFSPSSATI 299
Query: 496 -CAGSQLVP*KFGIWKL 543
A + + K IW L
Sbjct: 300 PLAATGGMDKKLIIWDL 316
Score = 29.5 bits (63), Expect = 2.1
Identities = 11/46 (23%), Positives = 22/46 (47%)
Frame = +3
Query: 513 GALKIWDLEAAKLLRTFTGHXGAIKCMDFHPYGDYLTTGSCDSNVK 650
G + IWD + T+ GH A++ + D++ + S D+ +
Sbjct: 350 GTVSIWDSLLGNCVHTYHGHQDAVQAISVSTNTDFIVSVSVDNTAR 395
>At3g15980.3 68416.m02022 coatomer protein complex, subunit beta 2
(beta prime), putative contains 7 WD-40 repeats
(PF00400) (1 weak); identical to coatomer protein
complex, beta prime (beta'-COP) protein {Arabidopsis
thaliana} (GI:9294445); similar to Coatomer beta'
subunit (Beta'-coat protein) (Beta'-COP) (p102)
(SP:P35606) [Homo sapiens]
Length = 918
Score = 47.6 bits (108), Expect = 8e-06
Identities = 23/67 (34%), Positives = 34/67 (50%), Gaps = 1/67 (1%)
Frame = +1
Query: 313 AHKANVNCLAMGHKSNQ-VLATGGDDKKVNLWAIGRQSCLMSLSGHTTPVECVCFGHSED 489
AH+ VNC+ ++ L TG DD +W +SC+ +L GHT V VCF
Sbjct: 183 AHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSCVQTLDGHTHNVSAVCFHPELP 242
Query: 490 LVCAGSQ 510
++ GS+
Sbjct: 243 IIITGSE 249
Score = 35.1 bits (77), Expect = 0.043
Identities = 14/43 (32%), Positives = 22/43 (51%)
Frame = +3
Query: 522 KIWDLEAAKLLRTFTGHXGAIKCMDFHPYGDYLTTGSCDSNVK 650
K+WD + ++T GH + + FHP + TGS D V+
Sbjct: 212 KVWDYQTKSCVQTLDGHTHNVSAVCFHPELPIIITGSEDGTVR 254
Score = 33.1 bits (72), Expect = 0.17
Identities = 17/46 (36%), Positives = 23/46 (50%), Gaps = 2/46 (4%)
Frame = +3
Query: 519 LKIWDLEAAKLLRTFTGHXGAIKCMDFHPYGD--YLTTGSCDSNVK 650
+KIW+L + T H + C+D+ GD YL TGS D K
Sbjct: 167 IKIWNLGSPDPNFTLDAHQKGVNCVDYFTGGDKPYLITGSDDHTAK 212
Score = 29.9 bits (64), Expect = 1.6
Identities = 17/74 (22%), Positives = 28/74 (37%), Gaps = 2/74 (2%)
Frame = +1
Query: 253 SNNLLITMEATRRSWKLQ--FVAHKANVNCLAMGHKSNQVLATGGDDKKVNLWAIGRQSC 426
S+++LI + W F H V + K A+ D+ + +W +G
Sbjct: 118 SDDMLIKLWDWENGWACTQIFEGHSHYVMQVVFNPKDTNTFASASLDRTIKIWNLGSPDP 177
Query: 427 LMSLSGHTTPVECV 468
+L H V CV
Sbjct: 178 NFTLDAHQKGVNCV 191
Score = 28.3 bits (60), Expect = 5.0
Identities = 13/54 (24%), Positives = 25/54 (46%), Gaps = 4/54 (7%)
Frame = +3
Query: 501 WFTTGA----LKIWDLEAAKLLRTFTGHXGAIKCMDFHPYGDYLTTGSCDSNVK 650
W GA +++++ ++ F H I+C+ HP Y+ + S D +K
Sbjct: 71 WVVAGADDMYIRVYNYNTMDKVKVFEAHSDYIRCVAVHPTLPYVLSSSDDMLIK 124
>At3g15980.2 68416.m02021 coatomer protein complex, subunit beta 2
(beta prime), putative contains 7 WD-40 repeats
(PF00400) (1 weak); identical to coatomer protein
complex, beta prime (beta'-COP) protein {Arabidopsis
thaliana} (GI:9294445); similar to Coatomer beta'
subunit (Beta'-coat protein) (Beta'-COP) (p102)
(SP:P35606) [Homo sapiens]
Length = 918
Score = 47.6 bits (108), Expect = 8e-06
Identities = 23/67 (34%), Positives = 34/67 (50%), Gaps = 1/67 (1%)
Frame = +1
Query: 313 AHKANVNCLAMGHKSNQ-VLATGGDDKKVNLWAIGRQSCLMSLSGHTTPVECVCFGHSED 489
AH+ VNC+ ++ L TG DD +W +SC+ +L GHT V VCF
Sbjct: 183 AHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSCVQTLDGHTHNVSAVCFHPELP 242
Query: 490 LVCAGSQ 510
++ GS+
Sbjct: 243 IIITGSE 249
Score = 35.1 bits (77), Expect = 0.043
Identities = 14/43 (32%), Positives = 22/43 (51%)
Frame = +3
Query: 522 KIWDLEAAKLLRTFTGHXGAIKCMDFHPYGDYLTTGSCDSNVK 650
K+WD + ++T GH + + FHP + TGS D V+
Sbjct: 212 KVWDYQTKSCVQTLDGHTHNVSAVCFHPELPIIITGSEDGTVR 254
Score = 33.1 bits (72), Expect = 0.17
Identities = 17/46 (36%), Positives = 23/46 (50%), Gaps = 2/46 (4%)
Frame = +3
Query: 519 LKIWDLEAAKLLRTFTGHXGAIKCMDFHPYGD--YLTTGSCDSNVK 650
+KIW+L + T H + C+D+ GD YL TGS D K
Sbjct: 167 IKIWNLGSPDPNFTLDAHQKGVNCVDYFTGGDKPYLITGSDDHTAK 212
Score = 29.9 bits (64), Expect = 1.6
Identities = 17/74 (22%), Positives = 28/74 (37%), Gaps = 2/74 (2%)
Frame = +1
Query: 253 SNNLLITMEATRRSWKLQ--FVAHKANVNCLAMGHKSNQVLATGGDDKKVNLWAIGRQSC 426
S+++LI + W F H V + K A+ D+ + +W +G
Sbjct: 118 SDDMLIKLWDWENGWACTQIFEGHSHYVMQVVFNPKDTNTFASASLDRTIKIWNLGSPDP 177
Query: 427 LMSLSGHTTPVECV 468
+L H V CV
Sbjct: 178 NFTLDAHQKGVNCV 191
Score = 28.3 bits (60), Expect = 5.0
Identities = 13/54 (24%), Positives = 25/54 (46%), Gaps = 4/54 (7%)
Frame = +3
Query: 501 WFTTGA----LKIWDLEAAKLLRTFTGHXGAIKCMDFHPYGDYLTTGSCDSNVK 650
W GA +++++ ++ F H I+C+ HP Y+ + S D +K
Sbjct: 71 WVVAGADDMYIRVYNYNTMDKVKVFEAHSDYIRCVAVHPTLPYVLSSSDDMLIK 124
>At3g15980.1 68416.m02020 coatomer protein complex, subunit beta 2
(beta prime), putative contains 7 WD-40 repeats
(PF00400) (1 weak); identical to coatomer protein
complex, beta prime (beta'-COP) protein {Arabidopsis
thaliana} (GI:9294445); similar to Coatomer beta'
subunit (Beta'-coat protein) (Beta'-COP) (p102)
(SP:P35606) [Homo sapiens]
Length = 909
Score = 47.6 bits (108), Expect = 8e-06
Identities = 23/67 (34%), Positives = 34/67 (50%), Gaps = 1/67 (1%)
Frame = +1
Query: 313 AHKANVNCLAMGHKSNQ-VLATGGDDKKVNLWAIGRQSCLMSLSGHTTPVECVCFGHSED 489
AH+ VNC+ ++ L TG DD +W +SC+ +L GHT V VCF
Sbjct: 183 AHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSCVQTLDGHTHNVSAVCFHPELP 242
Query: 490 LVCAGSQ 510
++ GS+
Sbjct: 243 IIITGSE 249
Score = 35.1 bits (77), Expect = 0.043
Identities = 14/43 (32%), Positives = 22/43 (51%)
Frame = +3
Query: 522 KIWDLEAAKLLRTFTGHXGAIKCMDFHPYGDYLTTGSCDSNVK 650
K+WD + ++T GH + + FHP + TGS D V+
Sbjct: 212 KVWDYQTKSCVQTLDGHTHNVSAVCFHPELPIIITGSEDGTVR 254
Score = 33.1 bits (72), Expect = 0.17
Identities = 17/46 (36%), Positives = 23/46 (50%), Gaps = 2/46 (4%)
Frame = +3
Query: 519 LKIWDLEAAKLLRTFTGHXGAIKCMDFHPYGD--YLTTGSCDSNVK 650
+KIW+L + T H + C+D+ GD YL TGS D K
Sbjct: 167 IKIWNLGSPDPNFTLDAHQKGVNCVDYFTGGDKPYLITGSDDHTAK 212
Score = 29.9 bits (64), Expect = 1.6
Identities = 17/74 (22%), Positives = 28/74 (37%), Gaps = 2/74 (2%)
Frame = +1
Query: 253 SNNLLITMEATRRSWKLQ--FVAHKANVNCLAMGHKSNQVLATGGDDKKVNLWAIGRQSC 426
S+++LI + W F H V + K A+ D+ + +W +G
Sbjct: 118 SDDMLIKLWDWENGWACTQIFEGHSHYVMQVVFNPKDTNTFASASLDRTIKIWNLGSPDP 177
Query: 427 LMSLSGHTTPVECV 468
+L H V CV
Sbjct: 178 NFTLDAHQKGVNCV 191
Score = 28.3 bits (60), Expect = 5.0
Identities = 13/54 (24%), Positives = 25/54 (46%), Gaps = 4/54 (7%)
Frame = +3
Query: 501 WFTTGA----LKIWDLEAAKLLRTFTGHXGAIKCMDFHPYGDYLTTGSCDSNVK 650
W GA +++++ ++ F H I+C+ HP Y+ + S D +K
Sbjct: 71 WVVAGADDMYIRVYNYNTMDKVKVFEAHSDYIRCVAVHPTLPYVLSSSDDMLIK 124
>At1g52360.1 68414.m05909 coatomer protein complex, subunit beta 2
(beta prime), putative contains 7 WD-40 repeats
(PF00400) (1 weak); similar to (SP:O55029) Coatomer
beta' subunit (Beta'-coat protein) (Beta'-COP) (p102)
(SP:O55029) [Mus musculus]; similar to GI:298096 from
[Homo sapiens]
Length = 926
Score = 47.6 bits (108), Expect = 8e-06
Identities = 23/67 (34%), Positives = 34/67 (50%), Gaps = 1/67 (1%)
Frame = +1
Query: 313 AHKANVNCLAMGHKSNQ-VLATGGDDKKVNLWAIGRQSCLMSLSGHTTPVECVCFGHSED 489
AH+ VNC+ ++ L TG DD +W +SC+ +L GHT V VCF
Sbjct: 183 AHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSCVQTLEGHTHNVSAVCFHPELP 242
Query: 490 LVCAGSQ 510
++ GS+
Sbjct: 243 IIITGSE 249
Score = 35.1 bits (77), Expect = 0.043
Identities = 14/43 (32%), Positives = 22/43 (51%)
Frame = +3
Query: 522 KIWDLEAAKLLRTFTGHXGAIKCMDFHPYGDYLTTGSCDSNVK 650
K+WD + ++T GH + + FHP + TGS D V+
Sbjct: 212 KVWDYQTKSCVQTLEGHTHNVSAVCFHPELPIIITGSEDGTVR 254
Score = 33.1 bits (72), Expect = 0.17
Identities = 17/46 (36%), Positives = 23/46 (50%), Gaps = 2/46 (4%)
Frame = +3
Query: 519 LKIWDLEAAKLLRTFTGHXGAIKCMDFHPYGD--YLTTGSCDSNVK 650
+KIW+L + T H + C+D+ GD YL TGS D K
Sbjct: 167 IKIWNLGSPDPNFTLDAHQKGVNCVDYFTGGDKPYLITGSDDHTAK 212
Score = 31.1 bits (67), Expect = 0.70
Identities = 25/120 (20%), Positives = 46/120 (38%), Gaps = 4/120 (3%)
Frame = +1
Query: 253 SNNLLITMEATRRSWKLQ--FVAHKANVNCLAMGHKSNQVLATGGDDKKVNLWAIGRQSC 426
S+++LI + + W F H V + K A+ D+ + +W +G
Sbjct: 118 SDDMLIKLWDWEKGWACTQIFEGHSHYVMQVTFNPKDTNTFASASLDRTIKIWNLGSPDP 177
Query: 427 LMSLSGHTTPVECVCF--GHSEDLVCAGSQLVP*KFGIWKLLNC*EHSQGTKEPLSVWIF 600
+L H V CV + G + + GS K ++ +C + +G +S F
Sbjct: 178 NFTLDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSCVQTLEGHTHNVSAVCF 237
Score = 28.3 bits (60), Expect = 5.0
Identities = 13/54 (24%), Positives = 25/54 (46%), Gaps = 4/54 (7%)
Frame = +3
Query: 501 WFTTGA----LKIWDLEAAKLLRTFTGHXGAIKCMDFHPYGDYLTTGSCDSNVK 650
W GA +++++ ++ F H I+C+ HP Y+ + S D +K
Sbjct: 71 WVVAGADDMYIRVYNYNTMDKVKVFEAHSDYIRCVAVHPTLPYVLSSSDDMLIK 124
>At4g15900.1 68417.m02416 PP1/PP2A phosphatases pleiotropic
regulator 1 (PRL1) identical to PP1/PP2A phosphatases
pleiotropic regulator PRL1 (SP:Q42384) [Arabidopsis
thaliana], PRL1 [Arabidopsis thaliana] GI:577733;
contains Pfam PF00400: WD domain, G-beta repeat (7
copies)
Length = 486
Score = 44.8 bits (101), Expect = 5e-05
Identities = 18/41 (43%), Positives = 25/41 (60%)
Frame = +3
Query: 519 LKIWDLEAAKLLRTFTGHXGAIKCMDFHPYGDYLTTGSCDS 641
+K WDLE K++R++ GH + C+ HP D L TG DS
Sbjct: 242 VKCWDLEQNKVIRSYHGHLSGVYCLALHPTLDVLLTGGRDS 282
Score = 39.9 bits (89), Expect = 0.002
Identities = 27/76 (35%), Positives = 36/76 (47%)
Frame = +1
Query: 316 HKANVNCLAMGHKSNQVLATGGDDKKVNLWAIGRQSCLMSLSGHTTPVECVCFGHSEDLV 495
H + V CLA+ H + VL TGG D +W I + + +LSGH V V ++ V
Sbjct: 259 HLSGVYCLAL-HPTLDVLLTGGRDSVCRVWDIRTKMQIFALSGHDNTVCSVFTRPTDPQV 317
Query: 496 CAGSQLVP*KFGIWKL 543
GS KF W L
Sbjct: 318 VTGSHDTTIKF--WDL 331
Score = 38.3 bits (85), Expect = 0.005
Identities = 19/71 (26%), Positives = 34/71 (47%)
Frame = +1
Query: 298 KLQFVAHKANVNCLAMGHKSNQVLATGGDDKKVNLWAIGRQSCLMSLSGHTTPVECVCFG 477
KL H V LA+ ++ + + G DDK+V W + + + S GH + V C+
Sbjct: 211 KLTLTGHIEQVRGLAVSNRHTYMFSAG-DDKQVKCWDLEQNKVIRSYHGHLSGVYCLALH 269
Query: 478 HSEDLVCAGSQ 510
+ D++ G +
Sbjct: 270 PTLDVLLTGGR 280
Score = 35.9 bits (79), Expect = 0.025
Identities = 14/44 (31%), Positives = 22/44 (50%)
Frame = +3
Query: 519 LKIWDLEAAKLLRTFTGHXGAIKCMDFHPYGDYLTTGSCDSNVK 650
+K WDL K + T T H +++ M HP + + S D+ K
Sbjct: 326 IKFWDLRYGKTMSTLTHHKKSVRAMTLHPKENAFASASADNTKK 369
Score = 32.3 bits (70), Expect = 0.30
Identities = 17/54 (31%), Positives = 25/54 (46%), Gaps = 4/54 (7%)
Frame = +3
Query: 501 WFTTGA----LKIWDLEAAKLLRTFTGHXGAIKCMDFHPYGDYLTTGSCDSNVK 650
WF TG+ +KIWD+ L T TGH ++ + Y+ + D VK
Sbjct: 190 WFCTGSADRTIKIWDVATGVLKLTLTGHIEQVRGLAVSNRHTYMFSAGDDKQVK 243
Score = 30.3 bits (65), Expect = 1.2
Identities = 12/35 (34%), Positives = 18/35 (51%)
Frame = +3
Query: 546 KLLRTFTGHXGAIKCMDFHPYGDYLTTGSCDSNVK 650
K R GH G ++ + F P ++ TGS D +K
Sbjct: 167 KNYRVIQGHLGWVRSVAFDPSNEWFCTGSADRTIK 201
Score = 27.5 bits (58), Expect = 8.7
Identities = 10/43 (23%), Positives = 20/43 (46%)
Frame = +3
Query: 522 KIWDLEAAKLLRTFTGHXGAIKCMDFHPYGDYLTTGSCDSNVK 650
++WD+ + +GH + + P + TGS D+ +K
Sbjct: 285 RVWDIRTKMQIFALSGHDNTVCSVFTRPTDPQVVTGSHDTTIK 327
>At5g67320.1 68418.m08490 WD-40 repeat family protein strong
similarity to unknown protein (ref|NP_005638.1)
Length = 613
Score = 44.4 bits (100), Expect = 7e-05
Identities = 16/43 (37%), Positives = 27/43 (62%)
Frame = +3
Query: 519 LKIWDLEAAKLLRTFTGHXGAIKCMDFHPYGDYLTTGSCDSNV 647
+K+WD E K+L +F GH + + F P G+Y+ +GS D ++
Sbjct: 523 VKLWDAELGKMLCSFNGHREPVYSLAFSPNGEYIASGSLDKSI 565
Score = 35.1 bits (77), Expect = 0.043
Identities = 17/42 (40%), Positives = 24/42 (57%)
Frame = +3
Query: 513 GALKIWDLEAAKLLRTFTGHXGAIKCMDFHPYGDYLTTGSCD 638
G +IW L +L+ T + H G I + ++ GDYL TGS D
Sbjct: 346 GQARIWTLNG-ELISTLSKHKGPIFSLKWNKKGDYLLTGSVD 386
Score = 34.7 bits (76), Expect = 0.057
Identities = 14/32 (43%), Positives = 19/32 (59%)
Frame = +3
Query: 555 RTFTGHXGAIKCMDFHPYGDYLTTGSCDSNVK 650
+TFTGH G + C+ + P G L + S DS K
Sbjct: 442 KTFTGHQGEVNCVKWDPTGSLLASCSDDSTAK 473
Score = 31.9 bits (69), Expect = 0.40
Identities = 20/80 (25%), Positives = 32/80 (40%)
Frame = +1
Query: 268 ITMEATRRSWKLQFVAHKANVNCLAMGHKSNQVLATGGDDKKVNLWAIGRQSCLMSLSGH 447
+ + WK QF H L + ++N AT D + L IG + +GH
Sbjct: 390 VVWDVKAEEWKQQFEFHSGPT--LDVDWRNNVSFATSSTDSMIYLCKIGETRPAKTFTGH 447
Query: 448 TTPVECVCFGHSEDLVCAGS 507
V CV + + L+ + S
Sbjct: 448 QGEVNCVKWDPTGSLLASCS 467
Score = 31.1 bits (67), Expect = 0.70
Identities = 15/47 (31%), Positives = 22/47 (46%)
Frame = +1
Query: 367 LATGGDDKKVNLWAIGRQSCLMSLSGHTTPVECVCFGHSEDLVCAGS 507
LA+ D V LW L S +GH PV + F + + + +GS
Sbjct: 514 LASASFDSTVKLWDAELGKMLCSFNGHREPVYSLAFSPNGEYIASGS 560
Score = 30.7 bits (66), Expect = 0.93
Identities = 14/51 (27%), Positives = 24/51 (47%)
Frame = +1
Query: 307 FVAHKANVNCLAMGHKSNQVLATGGDDKKVNLWAIGRQSCLMSLSGHTTPV 459
F H+ VNC+ + +LA+ DD +W I + + + L HT +
Sbjct: 444 FTGHQGEVNCVKWD-PTGSLLASCSDDSTAKIWNIKQSTFVHDLREHTKEI 493
>At3g49660.1 68416.m05427 transducin family protein / WD-40 repeat
family protein beta-transducin, Schizosaccharomyces
pombe, EMBL:CAA17803
Length = 317
Score = 44.4 bits (100), Expect = 7e-05
Identities = 16/44 (36%), Positives = 27/44 (61%)
Frame = +3
Query: 519 LKIWDLEAAKLLRTFTGHXGAIKCMDFHPYGDYLTTGSCDSNVK 650
LK+WD+E L++T GH C++F+P + + +GS D V+
Sbjct: 95 LKLWDVETGSLIKTLIGHTNYAFCVNFNPQSNMIVSGSFDETVR 138
Score = 40.3 bits (90), Expect = 0.001
Identities = 18/68 (26%), Positives = 35/68 (51%)
Frame = +1
Query: 304 QFVAHKANVNCLAMGHKSNQVLATGGDDKKVNLWAIGRQSCLMSLSGHTTPVECVCFGHS 483
+F H+ ++ +A + + + + DDK + LW + S + +L GHT CV F
Sbjct: 66 EFTGHENGISDVAFSSDA-RFIVSASDDKTLKLWDVETGSLIKTLIGHTNYAFCVNFNPQ 124
Query: 484 EDLVCAGS 507
+++ +GS
Sbjct: 125 SNMIVSGS 132
Score = 39.1 bits (87), Expect = 0.003
Identities = 29/104 (27%), Positives = 53/104 (50%), Gaps = 13/104 (12%)
Frame = +1
Query: 235 ILFMEFSNN----LLITMEATRRSWKL---QFV-AHKANVN---CL--AMGHKSNQVLAT 375
+ F+ FS N L+ T++ T R W + +F+ + +VN C+ A + + + +
Sbjct: 201 VSFVRFSPNGKFILVGTLDNTLRLWNISSAKFLKTYTGHVNAQYCISSAFSVTNGKRIVS 260
Query: 376 GGDDKKVNLWAIGRQSCLMSLSGHTTPVECVCFGHSEDLVCAGS 507
G +D V++W + + L L GHT V V +E+L+ +GS
Sbjct: 261 GSEDNCVHMWELNSKKLLQKLEGHTETVMNVACHPTENLIASGS 304
Score = 37.5 bits (83), Expect = 0.008
Identities = 18/66 (27%), Positives = 30/66 (45%)
Frame = +1
Query: 310 VAHKANVNCLAMGHKSNQVLATGGDDKKVNLWAIGRQSCLMSLSGHTTPVECVCFGHSED 489
+ H C+ +SN +++ G D+ V +W + CL L H+ PV V F
Sbjct: 110 IGHTNYAFCVNFNPQSNMIVS-GSFDETVRIWDVTTGKCLKVLPAHSDPVTAVDFNRDGS 168
Query: 490 LVCAGS 507
L+ + S
Sbjct: 169 LIVSSS 174
Score = 33.5 bits (73), Expect = 0.13
Identities = 11/25 (44%), Positives = 19/25 (76%)
Frame = +3
Query: 519 LKIWDLEAAKLLRTFTGHXGAIKCM 593
L++W++ +AK L+T+TGH A C+
Sbjct: 222 LRLWNISSAKFLKTYTGHVNAQYCI 246
Score = 33.1 bits (72), Expect = 0.17
Identities = 13/42 (30%), Positives = 23/42 (54%)
Frame = +3
Query: 525 IWDLEAAKLLRTFTGHXGAIKCMDFHPYGDYLTTGSCDSNVK 650
+W+L + KLL+ GH + + HP + + +GS D V+
Sbjct: 269 MWELNSKKLLQKLEGHTETVMNVACHPTENLIASGSLDKTVR 310
Score = 30.3 bits (65), Expect = 1.2
Identities = 11/40 (27%), Positives = 20/40 (50%)
Frame = +3
Query: 519 LKIWDLEAAKLLRTFTGHXGAIKCMDFHPYGDYLTTGSCD 638
++IWD+ K L+ H + +DF+ G + + S D
Sbjct: 137 VRIWDVTTGKCLKVLPAHSDPVTAVDFNRDGSLIVSSSYD 176
>At3g15880.2 68416.m02009 WD-40 repeat family protein contains Pfam
profile: PF00400 WD domain, G-beta repeat (7 copies)
Length = 1135
Score = 44.4 bits (100), Expect = 7e-05
Identities = 26/80 (32%), Positives = 37/80 (46%), Gaps = 1/80 (1%)
Frame = +1
Query: 301 LQFVAHKANVNCLAMGHKSNQV-LATGGDDKKVNLWAIGRQSCLMSLSGHTTPVECVCFG 477
L+ AH NVN LA + Q+ + T G+DK + +W + L + GH PV VC
Sbjct: 458 LEIDAHAGNVNDLAFSQPNQQLCVVTCGEDKTIKVWDAVTGNKLHTFEGHEAPVYSVCPH 517
Query: 478 HSEDLVCAGSQLVP*KFGIW 537
E++ S V K W
Sbjct: 518 QKENIQFIFSTAVDGKIKAW 537
Score = 27.9 bits (59), Expect = 6.6
Identities = 14/58 (24%), Positives = 24/58 (41%)
Frame = +1
Query: 307 FVAHKANVNCLAMGHKSNQVLATGGDDKKVNLWAIGRQSCLMSLSGHTTPVECVCFGH 480
F+A LA + N ++A G DD + ++ + L GH V + F +
Sbjct: 882 FMAPPPAATSLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHQKRVTGLAFSN 939
>At3g15880.1 68416.m02008 WD-40 repeat family protein contains Pfam
profile: PF00400 WD domain, G-beta repeat (7 copies)
Length = 1137
Score = 44.4 bits (100), Expect = 7e-05
Identities = 26/80 (32%), Positives = 37/80 (46%), Gaps = 1/80 (1%)
Frame = +1
Query: 301 LQFVAHKANVNCLAMGHKSNQV-LATGGDDKKVNLWAIGRQSCLMSLSGHTTPVECVCFG 477
L+ AH NVN LA + Q+ + T G+DK + +W + L + GH PV VC
Sbjct: 458 LEIDAHAGNVNDLAFSQPNQQLCVVTCGEDKTIKVWDAVTGNKLHTFEGHEAPVYSVCPH 517
Query: 478 HSEDLVCAGSQLVP*KFGIW 537
E++ S V K W
Sbjct: 518 QKENIQFIFSTAVDGKIKAW 537
Score = 27.9 bits (59), Expect = 6.6
Identities = 14/58 (24%), Positives = 24/58 (41%)
Frame = +1
Query: 307 FVAHKANVNCLAMGHKSNQVLATGGDDKKVNLWAIGRQSCLMSLSGHTTPVECVCFGH 480
F+A LA + N ++A G DD + ++ + L GH V + F +
Sbjct: 882 FMAPPPAATSLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHQKRVTGLAFSN 939
>At1g15440.2 68414.m01856 transducin family protein / WD-40 repeat
family protein Strong similarity to gb X95263 Periodic
tryptophan protein 2 gene (PWP2) from Homo sapiens and
contains 6 WD40, G-beta repeat domains
Length = 860
Score = 44.0 bits (99), Expect = 9e-05
Identities = 22/70 (31%), Positives = 37/70 (52%)
Frame = +1
Query: 265 LITMEATRRSWKLQFVAHKANVNCLAMGHKSNQVLATGGDDKKVNLWAIGRQSCLMSLSG 444
L+ + ++ L+ H +VNC+ S Q+LATG DD KV +W + +C ++ +
Sbjct: 331 LLVWDWRTETYILKQQGHYFDVNCVTYSPDS-QLLATGADDNKVKVWNVMSGTCFITFTE 389
Query: 445 HTTPVECVCF 474
HT V + F
Sbjct: 390 HTNAVTALHF 399
Score = 32.7 bits (71), Expect = 0.23
Identities = 14/46 (30%), Positives = 21/46 (45%)
Frame = +3
Query: 513 GALKIWDLEAAKLLRTFTGHXGAIKCMDFHPYGDYLTTGSCDSNVK 650
G L +WD + GH + C+ + P L TG+ D+ VK
Sbjct: 329 GQLLVWDWRTETYILKQQGHYFDVNCVTYSPDSQLLATGADDNKVK 374
Score = 28.3 bits (60), Expect = 5.0
Identities = 12/44 (27%), Positives = 21/44 (47%)
Frame = +3
Query: 519 LKIWDLEAAKLLRTFTGHXGAIKCMDFHPYGDYLTTGSCDSNVK 650
+K+W++ + TFT H A+ + F L + S D V+
Sbjct: 373 VKVWNVMSGTCFITFTEHTNAVTALHFMADNHSLLSASLDGTVR 416
>At1g15440.1 68414.m01855 transducin family protein / WD-40 repeat
family protein Strong similarity to gb X95263 Periodic
tryptophan protein 2 gene (PWP2) from Homo sapiens and
contains 6 WD40, G-beta repeat domains
Length = 900
Score = 44.0 bits (99), Expect = 9e-05
Identities = 22/70 (31%), Positives = 37/70 (52%)
Frame = +1
Query: 265 LITMEATRRSWKLQFVAHKANVNCLAMGHKSNQVLATGGDDKKVNLWAIGRQSCLMSLSG 444
L+ + ++ L+ H +VNC+ S Q+LATG DD KV +W + +C ++ +
Sbjct: 371 LLVWDWRTETYILKQQGHYFDVNCVTYSPDS-QLLATGADDNKVKVWNVMSGTCFITFTE 429
Query: 445 HTTPVECVCF 474
HT V + F
Sbjct: 430 HTNAVTALHF 439
Score = 32.7 bits (71), Expect = 0.23
Identities = 14/46 (30%), Positives = 21/46 (45%)
Frame = +3
Query: 513 GALKIWDLEAAKLLRTFTGHXGAIKCMDFHPYGDYLTTGSCDSNVK 650
G L +WD + GH + C+ + P L TG+ D+ VK
Sbjct: 369 GQLLVWDWRTETYILKQQGHYFDVNCVTYSPDSQLLATGADDNKVK 414
Score = 28.3 bits (60), Expect = 5.0
Identities = 12/44 (27%), Positives = 21/44 (47%)
Frame = +3
Query: 519 LKIWDLEAAKLLRTFTGHXGAIKCMDFHPYGDYLTTGSCDSNVK 650
+K+W++ + TFT H A+ + F L + S D V+
Sbjct: 413 VKVWNVMSGTCFITFTEHTNAVTALHFMADNHSLLSASLDGTVR 456
>At3g16650.1 68416.m02128 PP1/PP2A phosphatases pleiotropic
regulator 2 (PRL2) identical to SP|Q39190 PP1/PP2A
phosphatases pleiotropic regulator PRL2 {Arabidopsis
thaliana}, GB:Q39190 from [Arabidopsis thaliana];
contains Pfam PF00400: WD domain, G-beta repeat (7
copies, 1 weak)
Length = 479
Score = 42.7 bits (96), Expect = 2e-04
Identities = 17/41 (41%), Positives = 25/41 (60%)
Frame = +3
Query: 519 LKIWDLEAAKLLRTFTGHXGAIKCMDFHPYGDYLTTGSCDS 641
+K WDLE K++R++ GH + C+ HP D + TG DS
Sbjct: 236 VKCWDLEQNKVIRSYHGHLHGVYCLALHPTLDVVLTGGRDS 276
Score = 38.7 bits (86), Expect = 0.004
Identities = 20/71 (28%), Positives = 33/71 (46%)
Frame = +1
Query: 298 KLQFVAHKANVNCLAMGHKSNQVLATGGDDKKVNLWAIGRQSCLMSLSGHTTPVECVCFG 477
KL H V LA+ ++ + + G DDK+V W + + + S GH V C+
Sbjct: 205 KLTLTGHIGQVRGLAVSNRHTYMFSAG-DDKQVKCWDLEQNKVIRSYHGHLHGVYCLALH 263
Query: 478 HSEDLVCAGSQ 510
+ D+V G +
Sbjct: 264 PTLDVVLTGGR 274
Score = 35.5 bits (78), Expect = 0.033
Identities = 18/54 (33%), Positives = 26/54 (48%), Gaps = 4/54 (7%)
Frame = +3
Query: 501 WFTTGA----LKIWDLEAAKLLRTFTGHXGAIKCMDFHPYGDYLTTGSCDSNVK 650
WF TG+ +KIWD+ L T TGH G ++ + Y+ + D VK
Sbjct: 184 WFCTGSADRTIKIWDVATGVLKLTLTGHIGQVRGLAVSNRHTYMFSAGDDKQVK 237
Score = 34.7 bits (76), Expect = 0.057
Identities = 15/44 (34%), Positives = 22/44 (50%)
Frame = +3
Query: 519 LKIWDLEAAKLLRTFTGHXGAIKCMDFHPYGDYLTTGSCDSNVK 650
+K WDL K + T T H ++ M HP + + S D N+K
Sbjct: 319 IKFWDLRYGKSMATITNHKKTVRAMALHPKENDFVSASAD-NIK 361
Score = 30.3 bits (65), Expect = 1.2
Identities = 12/35 (34%), Positives = 18/35 (51%)
Frame = +3
Query: 546 KLLRTFTGHXGAIKCMDFHPYGDYLTTGSCDSNVK 650
K R GH G ++ + F P ++ TGS D +K
Sbjct: 161 KNYRVLQGHLGWVRSVAFDPSNEWFCTGSADRTIK 195
Score = 27.9 bits (59), Expect = 6.6
Identities = 24/76 (31%), Positives = 33/76 (43%)
Frame = +1
Query: 316 HKANVNCLAMGHKSNQVLATGGDDKKVNLWAIGRQSCLMSLSGHTTPVECVCFGHSEDLV 495
H V CLA+ H + V+ TGG D +W I R + + H + V V ++ V
Sbjct: 253 HLHGVYCLAL-HPTLDVVLTGGRDSVCRVWDI-RTKMQIFVLPHDSDVFSVLARPTDPQV 310
Query: 496 CAGSQLVP*KFGIWKL 543
GS KF W L
Sbjct: 311 ITGSHDSTIKF--WDL 324
>At2g21390.1 68415.m02546 coatomer protein complex, subunit alpha,
putative contains Pfam PF00400: WD domain, G-beta
repeat; similar to Coatomer alpha subunit (Alpha-coat
protein) (Alpha-COP) (HEPCOP) (HEP-COP) (SP:P53621)
[Homo sapiens]
Length = 1218
Score = 42.3 bits (95), Expect = 3e-04
Identities = 19/68 (27%), Positives = 29/68 (42%)
Frame = +1
Query: 349 HKSNQVLATGGDDKKVNLWAIGRQSCLMSLSGHTTPVECVCFGHSEDLVCAGSQLVP*KF 528
H S + +GGDD K+ +W CL +L GH + V F H + + S +
Sbjct: 60 HNSQPLFVSGGDDYKIKVWNYKTHRCLFTLLGHLDYIRTVQFHHENPWIVSASDDQTIRI 119
Query: 529 GIWKLLNC 552
W+ C
Sbjct: 120 WNWQSRTC 127
Score = 40.7 bits (91), Expect = 9e-04
Identities = 17/53 (32%), Positives = 27/53 (50%)
Frame = +1
Query: 349 HKSNQVLATGGDDKKVNLWAIGRQSCLMSLSGHTTPVECVCFGHSEDLVCAGS 507
H N + + DD+ + +W ++C+ L+GH V C F EDLV + S
Sbjct: 102 HHENPWIVSASDDQTIRIWNWQSRTCISVLTGHNHYVMCASFHPKEDLVVSAS 154
Score = 37.1 bits (82), Expect = 0.011
Identities = 13/44 (29%), Positives = 23/44 (52%)
Frame = +3
Query: 519 LKIWDLEAAKLLRTFTGHXGAIKCMDFHPYGDYLTTGSCDSNVK 650
++IW+ ++ + TGH + C FHP D + + S D V+
Sbjct: 117 IRIWNWQSRTCISVLTGHNHYVMCASFHPKEDLVVSASLDQTVR 160
Score = 35.1 bits (77), Expect = 0.043
Identities = 18/67 (26%), Positives = 33/67 (49%), Gaps = 2/67 (2%)
Frame = +1
Query: 316 HKANVNCLAMGHKSNQVLATGGDDKKVNLWAIGRQSC--LMSLSGHTTPVECVCFGHSED 489
H VN + H + ++ +G DD++V LW + + +L GH V V F +D
Sbjct: 203 HDRGVNWASF-HPTLPLIVSGADDRQVKLWRMNETKAWEVDTLRGHMNNVSSVMFHAKQD 261
Query: 490 LVCAGSQ 510
++ + S+
Sbjct: 262 IIVSNSE 268
Score = 31.5 bits (68), Expect = 0.53
Identities = 12/47 (25%), Positives = 22/47 (46%)
Frame = +3
Query: 510 TGALKIWDLEAAKLLRTFTGHXGAIKCMDFHPYGDYLTTGSCDSNVK 650
+G +++WD L+ F H G ++ + FH +G D +K
Sbjct: 30 SGVIQLWDYRMGTLIDRFDEHEGPVRGVHFHNSQPLFVSGGDDYKIK 76
Score = 31.5 bits (68), Expect = 0.53
Identities = 11/44 (25%), Positives = 23/44 (52%)
Frame = +3
Query: 519 LKIWDLEAAKLLRTFTGHXGAIKCMDFHPYGDYLTTGSCDSNVK 650
+K+W+ + + L T GH I+ + FH ++ + S D ++
Sbjct: 75 IKVWNYKTHRCLFTLLGHLDYIRTVQFHHENPWIVSASDDQTIR 118
>At1g79990.1 68414.m09356 coatomer protein complex, subunit beta 2
(beta prime), putative contains 7 WD-40 repeats
(PF00400) (1 weak); similar to Coatomer beta' subunit
(Beta'-coat protein) (Beta'-COP) (p102) (SP:P35606)
[Homo sapiens]; similar to Coatomer beta' subunit
(Beta'-coat protein) (Beta'-COP) (p102) (SP:O55029) [Mus
musculus]
Length = 920
Score = 42.3 bits (95), Expect = 3e-04
Identities = 22/67 (32%), Positives = 32/67 (47%), Gaps = 1/67 (1%)
Frame = +1
Query: 313 AHKANVNCLAMGHKSNQ-VLATGGDDKKVNLWAIGRQSCLMSLSGHTTPVECVCFGHSED 489
AH VNC+ ++ L TG DD +W +SC+ +L GHT V V F
Sbjct: 183 AHLKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSCVQTLEGHTHNVSAVSFHPELP 242
Query: 490 LVCAGSQ 510
++ GS+
Sbjct: 243 IIITGSE 249
Score = 36.3 bits (80), Expect = 0.019
Identities = 14/43 (32%), Positives = 22/43 (51%)
Frame = +3
Query: 522 KIWDLEAAKLLRTFTGHXGAIKCMDFHPYGDYLTTGSCDSNVK 650
K+WD + ++T GH + + FHP + TGS D V+
Sbjct: 212 KVWDYQTKSCVQTLEGHTHNVSAVSFHPELPIIITGSEDGTVR 254
Score = 33.1 bits (72), Expect = 0.17
Identities = 17/46 (36%), Positives = 23/46 (50%), Gaps = 2/46 (4%)
Frame = +3
Query: 519 LKIWDLEAAKLLRTFTGHXGAIKCMDFHPYGD--YLTTGSCDSNVK 650
+KIW+L + T H + C+D+ GD YL TGS D K
Sbjct: 167 IKIWNLGSPDPNFTLDAHLKGVNCVDYFTGGDKPYLITGSDDHTAK 212
Score = 30.3 bits (65), Expect = 1.2
Identities = 17/74 (22%), Positives = 29/74 (39%), Gaps = 2/74 (2%)
Frame = +1
Query: 253 SNNLLITMEATRRSWKLQ--FVAHKANVNCLAMGHKSNQVLATGGDDKKVNLWAIGRQSC 426
S+++LI + + W F H V + K A+ D+ + +W +G
Sbjct: 118 SDDMLIKLWDWEKGWLCTQIFEGHSHYVMQVTFNPKDTNTFASASLDRTIKIWNLGSPDP 177
Query: 427 LMSLSGHTTPVECV 468
+L H V CV
Sbjct: 178 NFTLDAHLKGVNCV 191
Score = 28.7 bits (61), Expect = 3.8
Identities = 13/54 (24%), Positives = 25/54 (46%), Gaps = 4/54 (7%)
Frame = +3
Query: 501 WFTTGA----LKIWDLEAAKLLRTFTGHXGAIKCMDFHPYGDYLTTGSCDSNVK 650
W GA +++++ ++ F H I+C+ HP Y+ + S D +K
Sbjct: 71 WVVAGADDMFIRVYNYNTMDKIKVFEAHADYIRCVAVHPTLPYVLSSSDDMLIK 124
>At4g18905.1 68417.m02787 transducin family protein / WD-40 repeat
family protein contains 5 (4 significant) WD-40 repeats;
similar to periodic tryptophan protein 1 homolog
(Keratinocyte protein IEF SSP 9502) (PWP1)(SP:Q13610)
(PIR2:I39360) [Homo sapiens]
Length = 494
Score = 41.9 bits (94), Expect = 4e-04
Identities = 19/66 (28%), Positives = 37/66 (56%), Gaps = 1/66 (1%)
Frame = +1
Query: 313 AHKANVNCLAMGHKSNQVLATGGDDKKVNLWAIGRQSCLMSLSGHTTPVECVCFGH-SED 489
+H +V LA + +LA+ DKKV +W + +C +++ HT V+ V + H + +
Sbjct: 263 SHTESVLGLAWNKEFRNILASASADKKVKVWDVATGTCKITMEHHTKEVQAVAWNHYAPE 322
Query: 490 LVCAGS 507
++ +GS
Sbjct: 323 VLLSGS 328
Score = 27.5 bits (58), Expect = 8.7
Identities = 16/63 (25%), Positives = 29/63 (46%), Gaps = 2/63 (3%)
Frame = +1
Query: 292 SWKLQFVAHKANVNCLAMGHKSNQVLATGGDDKKVNLWAIGRQ--SCLMSLSGHTTPVEC 465
++ +Q A V+ ++ + +LATG DK V LW + SC+ + + V
Sbjct: 395 TYTIQAHAQDRGVSSISYNISTPNLLATGSMDKSVKLWDLSNNEPSCIATHQPNAGAVFS 454
Query: 466 VCF 474
+ F
Sbjct: 455 ISF 457
>At4g18900.1 68417.m02786 transducin family protein / WD-40 repeat
family protein contains 5 (4 significant) WD-40 repeats;
similar to periodic tryptophan protein 1 homolog
(Keratinocyte protein IEF SSP 9502) (PWP1)(SP:Q13610)
(PIR2:I39360) [Homo sapiens]
Length = 461
Score = 41.9 bits (94), Expect = 4e-04
Identities = 19/66 (28%), Positives = 37/66 (56%), Gaps = 1/66 (1%)
Frame = +1
Query: 313 AHKANVNCLAMGHKSNQVLATGGDDKKVNLWAIGRQSCLMSLSGHTTPVECVCFGH-SED 489
+H +V LA + +LA+ DKKV +W + +C +++ HT V+ V + H + +
Sbjct: 231 SHTRSVLGLAWNKEFRNILASASADKKVKVWDVATGTCKITMEHHTKEVQAVAWNHYAPE 290
Query: 490 LVCAGS 507
++ +GS
Sbjct: 291 VLLSGS 296
>At1g62020.1 68414.m06995 coatomer protein complex, subunit alpha,
putative contains Pfam PF00400: WD domain, G-beta
repeat; similar to Coatomer alpha subunit (Alpha-coat
protein) (Alpha-COP) (HEPCOP) (HEP-COP) (SP:P53621)
[Homo sapiens]
Length = 1216
Score = 41.9 bits (94), Expect = 4e-04
Identities = 19/68 (27%), Positives = 29/68 (42%)
Frame = +1
Query: 349 HKSNQVLATGGDDKKVNLWAIGRQSCLMSLSGHTTPVECVCFGHSEDLVCAGSQLVP*KF 528
H S + +GGDD K+ +W CL +L GH + V F H + + S +
Sbjct: 60 HNSQPLFVSGGDDYKIKVWNYKNHRCLFTLLGHLDYIRTVQFHHEYPWIVSASDDQTIRI 119
Query: 529 GIWKLLNC 552
W+ C
Sbjct: 120 WNWQSRTC 127
Score = 37.1 bits (82), Expect = 0.011
Identities = 16/53 (30%), Positives = 26/53 (49%)
Frame = +1
Query: 349 HKSNQVLATGGDDKKVNLWAIGRQSCLMSLSGHTTPVECVCFGHSEDLVCAGS 507
H + + DD+ + +W ++C+ L+GH V C F EDLV + S
Sbjct: 102 HHEYPWIVSASDDQTIRIWNWQSRTCVSVLTGHNHYVMCASFHPKEDLVVSAS 154
Score = 36.7 bits (81), Expect = 0.014
Identities = 13/44 (29%), Positives = 23/44 (52%)
Frame = +3
Query: 519 LKIWDLEAAKLLRTFTGHXGAIKCMDFHPYGDYLTTGSCDSNVK 650
++IW+ ++ + TGH + C FHP D + + S D V+
Sbjct: 117 IRIWNWQSRTCVSVLTGHNHYVMCASFHPKEDLVVSASLDQTVR 160
Score = 36.3 bits (80), Expect = 0.019
Identities = 19/67 (28%), Positives = 33/67 (49%), Gaps = 2/67 (2%)
Frame = +1
Query: 316 HKANVNCLAMGHKSNQVLATGGDDKKVNLWAIGRQSC--LMSLSGHTTPVECVCFGHSED 489
H VN A H + ++ +G DD++V LW + + +L GH V V F +D
Sbjct: 203 HDRGVNWAAF-HPTLPLIVSGADDRQVKLWRMNETKAWEVDTLRGHMNNVSSVMFHAKQD 261
Query: 490 LVCAGSQ 510
++ + S+
Sbjct: 262 IIVSNSE 268
Score = 31.5 bits (68), Expect = 0.53
Identities = 12/47 (25%), Positives = 22/47 (46%)
Frame = +3
Query: 510 TGALKIWDLEAAKLLRTFTGHXGAIKCMDFHPYGDYLTTGSCDSNVK 650
+G +++WD L+ F H G ++ + FH +G D +K
Sbjct: 30 SGVIQLWDYRMGTLIDRFDEHEGPVRGVHFHNSQPLFVSGGDDYKIK 76
Score = 29.5 bits (63), Expect = 2.1
Identities = 11/44 (25%), Positives = 23/44 (52%)
Frame = +3
Query: 519 LKIWDLEAAKLLRTFTGHXGAIKCMDFHPYGDYLTTGSCDSNVK 650
+K+W+ + + L T GH I+ + FH ++ + S D ++
Sbjct: 75 IKVWNYKNHRCLFTLLGHLDYIRTVQFHHEYPWIVSASDDQTIR 118
>At5g10940.1 68418.m01269 transducin family protein / WD-40 repeat
family protein unnamed ORF cDNA FLJ10872, Homo sapiens,
EMBL:AK001734; contains Pfam PF00400: WD domain, G-beta
repeat (6 copies,1 weak)
Length = 757
Score = 41.1 bits (92), Expect = 7e-04
Identities = 24/77 (31%), Positives = 42/77 (54%), Gaps = 3/77 (3%)
Frame = +1
Query: 286 RRSWKLQFVAHKANVNCLAMGHKSNQVLATGGDDKKVNLWAIGRQSCLMSL-SGHTTPVE 462
R S + + H+ VN LA + + +L +G DD ++N+W + L S+ +GHT +
Sbjct: 39 RLSQEQELEGHQGCVNALAW-NSNGSLLISGSDDLRINIWNYSSRKLLHSIDTGHTANIF 97
Query: 463 CVCF--GHSEDLVCAGS 507
C F S++LV +G+
Sbjct: 98 CTKFVPETSDELVVSGA 114
Score = 35.1 bits (77), Expect = 0.043
Identities = 10/42 (23%), Positives = 21/42 (50%)
Frame = +3
Query: 525 IWDLEAAKLLRTFTGHXGAIKCMDFHPYGDYLTTGSCDSNVK 650
IW+ + +L++ G + C+ HP+ + T D+ +K
Sbjct: 647 IWEKQTGRLMKVLVGDESVLNCIQCHPFDSVVATSGIDNTIK 688
>At4g05410.1 68417.m00823 transducin family protein / WD-40 repeat
family protein contains 6 WD-40 repeats (PF00400); U3
snoRNP-associated 55-kDa protein, Homo sapiens,
gb:NP_004695; Vegetatible incompatibility protein
HET-E-1 (SP:Q00808) [Podospora anserina]
Length = 504
Score = 41.1 bits (92), Expect = 7e-04
Identities = 19/58 (32%), Positives = 33/58 (56%), Gaps = 1/58 (1%)
Frame = +1
Query: 337 LAMGHKSN-QVLATGGDDKKVNLWAIGRQSCLMSLSGHTTPVECVCFGHSEDLVCAGS 507
LA+ S+ + LATGG D+ V++W + + + + GH V C+CF + + +GS
Sbjct: 226 LALAVSSDGRYLATGGVDRHVHIWDVRTREHVQAFPGHRNTVSCLCFRYGTSELYSGS 283
Score = 32.7 bits (71), Expect = 0.23
Identities = 14/42 (33%), Positives = 21/42 (50%)
Frame = +3
Query: 525 IWDLEAAKLLRTFTGHXGAIKCMDFHPYGDYLTTGSCDSNVK 650
IWD+ + ++ F GH + C+ F L +GS D VK
Sbjct: 248 IWDVRTREHVQAFPGHRNTVSCLCFRYGTSELYSGSFDRTVK 289
>At5g16750.1 68418.m01961 transducin family protein / WD-40 repeat
family protein contains 8 WD-40 repeats (PF00400);
similar to transducin homolog sazD - Homo sapiens,
EMBL:U02609
Length = 876
Score = 39.9 bits (89), Expect = 0.002
Identities = 16/43 (37%), Positives = 23/43 (53%)
Frame = +3
Query: 519 LKIWDLEAAKLLRTFTGHXGAIKCMDFHPYGDYLTTGSCDSNV 647
+++WDLE K +R++ GH G + M H G L T D V
Sbjct: 84 IRVWDLETLKCIRSWKGHEGPVMGMACHASGGLLATAGADRKV 126
Score = 36.3 bits (80), Expect = 0.019
Identities = 15/34 (44%), Positives = 20/34 (58%)
Frame = +1
Query: 358 NQVLATGGDDKKVNLWAIGRQSCLMSLSGHTTPV 459
+Q + T DK V +WAI SCL + GHT+ V
Sbjct: 553 DQCVMTASGDKTVKIWAISDGSCLKTFEGHTSSV 586
Score = 35.9 bits (79), Expect = 0.025
Identities = 24/75 (32%), Positives = 37/75 (49%), Gaps = 2/75 (2%)
Frame = +1
Query: 289 RSWKLQFVAHKANVNCLAMGHKSNQVLATGGDDKKVNLWAIGRQSCLMSLSGHTTPVECV 468
RSWK H+ V +A H S +LAT G D+KV +W + C GH V +
Sbjct: 96 RSWK----GHEGPVMGMAC-HASGGLLATAGADRKVLVWDVDGGFCTHYFRGHKGVVSSI 150
Query: 469 CF--GHSEDLVCAGS 507
F +++++ +GS
Sbjct: 151 LFHPDSNKNILISGS 165
Score = 32.3 bits (70), Expect = 0.30
Identities = 15/65 (23%), Positives = 34/65 (52%)
Frame = +1
Query: 313 AHKANVNCLAMGHKSNQVLATGGDDKKVNLWAIGRQSCLMSLSGHTTPVECVCFGHSEDL 492
AH ++N +A+ +++ ++ TG +D+ ++W + +++L GH + V F +
Sbjct: 497 AHDKDINSVAVA-RNDSLVCTGSEDRTASIWRLPDLVHVVTLKGHKRRIFSVEFSTVDQC 555
Query: 493 VCAGS 507
V S
Sbjct: 556 VMTAS 560
Score = 31.9 bits (69), Expect = 0.40
Identities = 14/39 (35%), Positives = 20/39 (51%)
Frame = +1
Query: 358 NQVLATGGDDKKVNLWAIGRQSCLMSLSGHTTPVECVCF 474
N ++ TG DK V LW +SC+ +GH + V F
Sbjct: 416 NVLIVTGSKDKTVRLWNATSKSCIGVGTGHNGDILAVAF 454
Score = 31.5 bits (68), Expect = 0.53
Identities = 14/44 (31%), Positives = 23/44 (52%), Gaps = 2/44 (4%)
Frame = +3
Query: 525 IWDLEAAKLLRTFTGHXGAIKCMDFHPYG--DYLTTGSCDSNVK 650
+WD++ F GH G + + FHP + L +GS D+ V+
Sbjct: 128 VWDVDGGFCTHYFRGHKGVVSSILFHPDSNKNILISGSDDATVR 171
Score = 31.5 bits (68), Expect = 0.53
Identities = 14/30 (46%), Positives = 21/30 (70%)
Frame = +1
Query: 316 HKANVNCLAMGHKSNQVLATGGDDKKVNLW 405
H+ V LA+G K+ +++ATGG D +NLW
Sbjct: 624 HEDKVWALAVGKKT-EMIATGGGDAVINLW 652
Score = 29.5 bits (63), Expect = 2.1
Identities = 18/79 (22%), Positives = 34/79 (43%), Gaps = 1/79 (1%)
Frame = +1
Query: 274 MEATRRSWKLQFVAHKANVNCLAMGHKSNQVLATGGDDKKVNLWAIGRQSCLMSLSGHTT 453
+++T S K + LA+ +++L + G +++ +W + C+ S GH
Sbjct: 45 VDSTDSSVKSTIEGESDTLTALALS-PDDKLLFSAGHSRQIRVWDLETLKCIRSWKGHEG 103
Query: 454 PV-ECVCFGHSEDLVCAGS 507
PV C L AG+
Sbjct: 104 PVMGMACHASGGLLATAGA 122
>At5g56130.1 68418.m07002 transducin family protein / WD-40 repeat
family protein contains 5 WD-40 repeats (PF00400);
similar to beta transducin-like protein HET-E2C*4
(GI:17225206) [Podospora anserina]
Length = 315
Score = 39.5 bits (88), Expect = 0.002
Identities = 20/66 (30%), Positives = 32/66 (48%)
Frame = +1
Query: 313 AHKANVNCLAMGHKSNQVLATGGDDKKVNLWAIGRQSCLMSLSGHTTPVECVCFGHSEDL 492
AH A C+A+ K + A G D V+LW I CL + + PV + F +S +
Sbjct: 189 AHTAGCYCIAIDPKG-RYFAVGSADSLVSLWDISDMLCLRTFTKLEWPVRTISFNYSGEY 247
Query: 493 VCAGSQ 510
+ + S+
Sbjct: 248 IASASE 253
Score = 29.5 bits (63), Expect = 2.1
Identities = 12/40 (30%), Positives = 22/40 (55%)
Frame = +3
Query: 519 LKIWDLEAAKLLRTFTGHXGAIKCMDFHPYGDYLTTGSCD 638
+ +WD+ LRTFT ++ + F+ G+Y+ + S D
Sbjct: 215 VSLWDISDMLCLRTFTKLEWPVRTISFNYSGEYIASASED 254
>At5g50120.1 68418.m06207 transducin family protein / WD-40 repeat
family protein Similar to En/Spm-like transposon protein
(gi:2739374)[Arabidopsis thaliana]; similar to
GTP-binding regulatory protein and WD-repeat protein;
contains 7 WD-40 repeats
Length = 388
Score = 39.5 bits (88), Expect = 0.002
Identities = 21/53 (39%), Positives = 29/53 (54%), Gaps = 2/53 (3%)
Frame = +1
Query: 316 HKANVNCLAMGHKSNQVLATGGDDKKVNLWAIGRQ--SCLMSLSGHTTPVECV 468
H +V CLA+ + +L +G DK V LW + SCL L GH PV+C+
Sbjct: 304 HTESVLCLAV---VSDILCSGSADKTVRLWKCSAKDYSCLAMLEGHLGPVKCL 353
>At5g13840.1 68418.m01618 WD-40 repeat family protein contains 6
WD-40 repeats (PF00400); similar to Fzr1
(GI:6463679){Homo sapiens}
Length = 481
Score = 39.5 bits (88), Expect = 0.002
Identities = 22/83 (26%), Positives = 38/83 (45%), Gaps = 1/83 (1%)
Frame = +1
Query: 304 QFVAHKANVNCLAMGHKSNQVLATGGDDKKVNLWAIGRQSCLMSLSGHTTPVECVCFG-H 480
+ V HK+ V L H + LA+GG+D ++ +W Q ++ L+ HT V+ + + H
Sbjct: 293 KLVGHKSEVCGLKWSHDDRE-LASGGNDNQLLVWNNHSQQPILKLTEHTAAVKAITWSPH 351
Query: 481 SEDLVCAGSQLVP*KFGIWKLLN 549
L+ +G W N
Sbjct: 352 QSSLLASGGGTADRCIRFWNTTN 374
>At5g02430.1 68418.m00167 WD-40 repeat family protein contains 6
WD-40 repeats (PF00400); rab11 binding protein, Bos
taurus, EMBL:AF117897
Length = 905
Score = 39.5 bits (88), Expect = 0.002
Identities = 30/82 (36%), Positives = 38/82 (46%), Gaps = 1/82 (1%)
Frame = +1
Query: 307 FVAHKANVNCLAMGHKSNQVLATGGDDKKVNLWAIGRQSCLMSLSGHTTPVECVCFGH-S 483
F H +V L + +Q+L + DK V LW I QSCL L H V CV F
Sbjct: 515 FTGHLDDV--LDLSWSRSQLLLSSSMDKTVRLWDIETQSCL-KLFAHNDYVTCVQFNPLD 571
Query: 484 EDLVCAGSQLVP*KFGIWKLLN 549
ED +GS + K IW + N
Sbjct: 572 EDYFISGS--LDAKIRIWNISN 591
Score = 37.9 bits (84), Expect = 0.006
Identities = 17/60 (28%), Positives = 31/60 (51%), Gaps = 1/60 (1%)
Frame = +3
Query: 474 WSFRRLSMCWFTTGALKIWDLEAAKLLRTFTGHXGAIKCMDFHPYG-DYLTTGSCDSNVK 650
WS +L + +++WD+E L+ F H + C+ F+P DY +GS D+ ++
Sbjct: 527 WSRSQLLLSSSMDKTVRLWDIETQSCLKLF-AHNDYVTCVQFNPLDEDYFISGSLDAKIR 585
>At5g49200.1 68418.m06089 WD-40 repeat family protein / zfwd4
protein (ZFWD4) contains 6 WD-40 repeats (PF00400);
contains Zinc finger C-x8-C-x5-C-x3-H type domain
(PF00642); identical to zfwd4 protein (GI:12057170)
[Arabidopsis thaliana]
Length = 419
Score = 39.1 bits (87), Expect = 0.003
Identities = 31/115 (26%), Positives = 52/115 (45%), Gaps = 11/115 (9%)
Frame = +1
Query: 163 FSAQYSQILFIN---IVTQT-LLVLKLEILFMEFSNNLLITMEATRRS------WKLQFV 312
F+ Q SQ L + +V Q + + +LF S+ ++ +AT S +
Sbjct: 196 FNVQTSQDLHLQAAGVVGQVNAMTIANGMLFAGTSSGSILVWKATTDSESDPFKYLTSLE 255
Query: 313 AHKANVNCLAMGHKSNQVLATGGDDKKVNLWAIGRQSCLMSLSGHT-TPVECVCF 474
H V C A+G Q+L +G DK + +W + C+M+L HT T +C+
Sbjct: 256 GHSGEVTCFAVG---GQMLYSGSVDKTIKMWDLNTLQCIMTLKQHTGTVTSLLCW 307
>At4g02730.1 68417.m00372 transducin family protein / WD-40 repeat
family protein similar to C. elegans putative WD-repeat
protein C14B1.4 (SP:Q17963)
Length = 333
Score = 39.1 bits (87), Expect = 0.003
Identities = 25/82 (30%), Positives = 38/82 (46%), Gaps = 1/82 (1%)
Frame = +1
Query: 265 LITMEATRRSWKLQFVAHKANVNCLAMGHKSNQVLATGGDDKKVNLW-AIGRQSCLMSLS 441
+I AT S ++ H + ++ LA S+ + DD + +W A CL L
Sbjct: 67 MILWSATNYSLIHRYEGHSSGISDLAWSSDSHYT-CSASDDCTLRIWDARSPYECLKVLR 125
Query: 442 GHTTPVECVCFGHSEDLVCAGS 507
GHT V CV F +L+ +GS
Sbjct: 126 GHTNFVFCVNFNPPSNLIVSGS 147
Score = 35.9 bits (79), Expect = 0.025
Identities = 28/105 (26%), Positives = 47/105 (44%), Gaps = 3/105 (2%)
Frame = +1
Query: 235 ILFMEFSNNLLITMEATRRSWKLQFVAHKANVNCL--AMGHKSNQVLATGGDDKKVNLWA 408
IL + L ++ AT + K+ + H V C+ A + + + +G +D V LW
Sbjct: 228 ILVATLDSTLKLSNYATGKFLKV-YTGHTNKVFCITSAFSVTNGKYIVSGSEDNCVYLWD 286
Query: 409 IGRQSCLMSLSGHTTPVECV-CFGHSEDLVCAGSQLVP*KFGIWK 540
+ ++ L L GHT V V C ++ +G+ L IWK
Sbjct: 287 LQARNILQRLEGHTDAVISVSCHPVQNEISSSGNHLDK-TIRIWK 330
Score = 34.3 bits (75), Expect = 0.075
Identities = 13/45 (28%), Positives = 26/45 (57%), Gaps = 1/45 (2%)
Frame = +3
Query: 519 LKIWDLEAA-KLLRTFTGHXGAIKCMDFHPYGDYLTTGSCDSNVK 650
L+IWD + + L+ GH + C++F+P + + +GS D ++
Sbjct: 109 LRIWDARSPYECLKVLRGHTNFVFCVNFNPPSNLIVSGSFDETIR 153
Score = 33.1 bits (72), Expect = 0.17
Identities = 15/64 (23%), Positives = 30/64 (46%)
Frame = +1
Query: 316 HKANVNCLAMGHKSNQVLATGGDDKKVNLWAIGRQSCLMSLSGHTTPVECVCFGHSEDLV 495
H A ++C+ + N +LA+ DK + LW+ S + GH++ + + +
Sbjct: 42 HTAAISCVKFSNDGN-LLASASVDKTMILWSATNYSLIHRYEGHSSGISDLAWSSDSHYT 100
Query: 496 CAGS 507
C+ S
Sbjct: 101 CSAS 104
Score = 29.1 bits (62), Expect = 2.8
Identities = 10/27 (37%), Positives = 16/27 (59%)
Frame = +3
Query: 525 IWDLEAAKLLRTFTGHXGAIKCMDFHP 605
+WDL+A +L+ GH A+ + HP
Sbjct: 284 LWDLQARNILQRLEGHTDAVISVSCHP 310
Score = 28.7 bits (61), Expect = 3.8
Identities = 12/32 (37%), Positives = 17/32 (53%)
Frame = +3
Query: 552 LRTFTGHXGAIKCMDFHPYGDYLTTGSCDSNV 647
L+T GH AI C+ F G+ L + S D +
Sbjct: 36 LKTLEGHTAAISCVKFSNDGNLLASASVDKTM 67
>At3g18950.1 68416.m02405 transducin family protein / WD-40 repeat
family protein contains 7 WD-40 repeats (PF00400);
similar to En/Spm-like transposon protein GI:2739374
from [Arabidopsis thaliana]; no characterized homologs
Length = 473
Score = 38.7 bits (86), Expect = 0.004
Identities = 26/89 (29%), Positives = 43/89 (48%)
Frame = +1
Query: 241 FMEFSNNLLITMEATRRSWKLQFVAHKANVNCLAMGHKSNQVLATGGDDKKVNLWAIGRQ 420
F+ S N +E RR L+ + H V+CL++ + +L +G DK + +W +
Sbjct: 224 FLTKSVNPKNYVEVRRRKNVLK-IRHYDAVSCLSLNEELG-LLYSGSWDKTLKVWRLSDS 281
Query: 421 SCLMSLSGHTTPVECVCFGHSEDLVCAGS 507
CL S+ H + V G +DL+ GS
Sbjct: 282 KCLESIQAHDDAINTVAAGF-DDLLFTGS 309
Score = 34.7 bits (76), Expect = 0.057
Identities = 19/54 (35%), Positives = 28/54 (51%), Gaps = 3/54 (5%)
Frame = +1
Query: 316 HKANVNCLAMGHKSNQVLATGGDDKKVNLW---AIGRQSCLMSLSGHTTPVECV 468
H+ V CLA + ++ +GG DK + +W G SCL L H PV+C+
Sbjct: 380 HRLAVLCLAA---AGSLVLSGGADKNICVWRRNGDGSHSCLSVLMDHVGPVKCL 430
Score = 30.3 bits (65), Expect = 1.2
Identities = 16/44 (36%), Positives = 22/44 (50%)
Frame = +3
Query: 519 LKIWDLEAAKLLRTFTGHXGAIKCMDFHPYGDYLTTGSCDSNVK 650
LK+W L +K L + H AI + + D L TGS D +K
Sbjct: 273 LKVWRLSDSKCLESIQAHDDAINTV-AAGFDDLLFTGSADGTLK 315
>At2g47990.1 68415.m06006 transducin family protein / WD-40 repeat
family protein similar to Vegetatible incompatibility
protein HET-E-1 (SP:Q00808) {Podospora anserina};
contains 5 WD-40 repeats (PF00400); similar to beta
transducin-like protein HET-E2C*4
(GP:17225206)[Podospora anserina]
Length = 530
Score = 38.7 bits (86), Expect = 0.004
Identities = 18/47 (38%), Positives = 24/47 (51%), Gaps = 1/47 (2%)
Frame = +3
Query: 513 GALKIWDLEAAKLLRTFTGHXGAIKCMDFHPYGD-YLTTGSCDSNVK 650
G +K WD+ A ++ GH ++C D P D L TGS D VK
Sbjct: 158 GVVKYWDVAGATVISDLLGHKDYVRCGDCSPVNDSMLVTGSYDHTVK 204
Score = 30.3 bits (65), Expect = 1.2
Identities = 15/48 (31%), Positives = 23/48 (47%), Gaps = 1/48 (2%)
Frame = +1
Query: 367 LATGGDDKKVNLWAIGRQSCLMSLSGHTTPVEC-VCFGHSEDLVCAGS 507
L +GGDD V W + + + L GH V C C ++ ++ GS
Sbjct: 151 LVSGGDDGVVKYWDVAGATVISDLLGHKDYVRCGDCSPVNDSMLVTGS 198
>At1g80490.2 68414.m09430 WD-40 repeat family protein contains 9
WD-40 repeats domain (PF00400) (6 weak)
Length = 1120
Score = 38.7 bits (86), Expect = 0.004
Identities = 22/80 (27%), Positives = 35/80 (43%), Gaps = 1/80 (1%)
Frame = +1
Query: 301 LQFVAHKANVNCLAMGHKSNQV-LATGGDDKKVNLWAIGRQSCLMSLSGHTTPVECVCFG 477
L+ AH VN +A + Q+ + T GDDK + +W + GH PV +C
Sbjct: 456 LEIDAHVGGVNDIAFSTPNKQLCVTTCGDDKTIKVWDAATGVKRYTFEGHEAPVYSICPH 515
Query: 478 HSEDLVCAGSQLVP*KFGIW 537
+ E++ S + K W
Sbjct: 516 YKENIQFIFSTALDGKIKAW 535
>At1g80490.1 68414.m09429 WD-40 repeat family protein contains 9
WD-40 repeats domain (PF00400) (6 weak)
Length = 1120
Score = 38.7 bits (86), Expect = 0.004
Identities = 22/80 (27%), Positives = 35/80 (43%), Gaps = 1/80 (1%)
Frame = +1
Query: 301 LQFVAHKANVNCLAMGHKSNQV-LATGGDDKKVNLWAIGRQSCLMSLSGHTTPVECVCFG 477
L+ AH VN +A + Q+ + T GDDK + +W + GH PV +C
Sbjct: 456 LEIDAHVGGVNDIAFSTPNKQLCVTTCGDDKTIKVWDAATGVKRYTFEGHEAPVYSICPH 515
Query: 478 HSEDLVCAGSQLVP*KFGIW 537
+ E++ S + K W
Sbjct: 516 YKENIQFIFSTALDGKIKAW 535
>At1g49450.1 68414.m05543 transducin family protein / WD-40 repeat
family protein contains 7 WD-40 repeats (PF00400);
similar to En/Spm-like transposon protein GI:2739374
from [Arabidopsis thaliana]; no characterized homologs
Length = 471
Score = 38.7 bits (86), Expect = 0.004
Identities = 28/89 (31%), Positives = 42/89 (47%)
Frame = +1
Query: 241 FMEFSNNLLITMEATRRSWKLQFVAHKANVNCLAMGHKSNQVLATGGDDKKVNLWAIGRQ 420
F+ S N +E RR L+ + H V+CL++ +L +G DK + +W +
Sbjct: 220 FLTKSVNPRNYVEVRRRKNVLK-IRHFDAVSCLSLNEDLG-LLYSGSWDKTLKVWRLSDS 277
Query: 421 SCLMSLSGHTTPVECVCFGHSEDLVCAGS 507
CL S+ H V V G +DLV GS
Sbjct: 278 KCLESIEAHDDAVNTVVSGF-DDLVFTGS 305
Score = 34.3 bits (75), Expect = 0.075
Identities = 19/54 (35%), Positives = 28/54 (51%), Gaps = 3/54 (5%)
Frame = +1
Query: 316 HKANVNCLAMGHKSNQVLATGGDDKKVNLW---AIGRQSCLMSLSGHTTPVECV 468
H+ V CLA + +L +GG DK + +W G +CL L H PV+C+
Sbjct: 376 HRMAVLCLAT---AGSLLLSGGADKNICVWKRNGDGSHTCLSVLMDHEGPVKCL 426
Score = 29.5 bits (63), Expect = 2.1
Identities = 14/44 (31%), Positives = 22/44 (50%)
Frame = +3
Query: 519 LKIWDLEAAKLLRTFTGHXGAIKCMDFHPYGDYLTTGSCDSNVK 650
LK+W L +K L + H A+ + + D + TGS D +K
Sbjct: 269 LKVWRLSDSKCLESIEAHDDAVNTV-VSGFDDLVFTGSADGTLK 311
>At4g34460.3 68417.m04900 guanine nucleotide-binding protein beta
subunit (GB1) / GTP-binding protein beta subunit (AGB1)
/ transducin contains 7 WD-40 repeats (PF00400);
identical to Guanine nucleotide-binding protein beta
subunit.SP:P49177 [Arabidopsis thaliana]; Weiss, CA et
al, PNAS 91:9954 (1994)
Length = 347
Score = 38.3 bits (85), Expect = 0.005
Identities = 20/55 (36%), Positives = 29/55 (52%), Gaps = 5/55 (9%)
Frame = +3
Query: 501 WFTTGAL----KIWDLEAA-KLLRTFTGHXGAIKCMDFHPYGDYLTTGSCDSNVK 650
WF +G+ ++WD AA + +RTF GH G + + F P G TGS D +
Sbjct: 219 WFISGSCDSTARLWDTRAASRAVRTFHGHEGDVNTVKFFPDGYRFGTGSDDGTCR 273
>At4g34460.2 68417.m04898 guanine nucleotide-binding protein beta
subunit (GB1) / GTP-binding protein beta subunit (AGB1)
/ transducin contains 7 WD-40 repeats (PF00400);
identical to Guanine nucleotide-binding protein beta
subunit.SP:P49177 [Arabidopsis thaliana]; Weiss, CA et
al, PNAS 91:9954 (1994)
Length = 315
Score = 38.3 bits (85), Expect = 0.005
Identities = 20/55 (36%), Positives = 29/55 (52%), Gaps = 5/55 (9%)
Frame = +3
Query: 501 WFTTGAL----KIWDLEAA-KLLRTFTGHXGAIKCMDFHPYGDYLTTGSCDSNVK 650
WF +G+ ++WD AA + +RTF GH G + + F P G TGS D +
Sbjct: 157 WFISGSCDSTARLWDTRAASRAVRTFHGHEGDVNTVKFFPDGYRFGTGSDDGTCR 211
>At4g34460.1 68417.m04899 guanine nucleotide-binding protein beta
subunit (GB1) / GTP-binding protein beta subunit (AGB1)
/ transducin contains 7 WD-40 repeats (PF00400);
identical to Guanine nucleotide-binding protein beta
subunit.SP:P49177 [Arabidopsis thaliana]; Weiss, CA et
al, PNAS 91:9954 (1994)
Length = 377
Score = 38.3 bits (85), Expect = 0.005
Identities = 20/55 (36%), Positives = 29/55 (52%), Gaps = 5/55 (9%)
Frame = +3
Query: 501 WFTTGAL----KIWDLEAA-KLLRTFTGHXGAIKCMDFHPYGDYLTTGSCDSNVK 650
WF +G+ ++WD AA + +RTF GH G + + F P G TGS D +
Sbjct: 219 WFISGSCDSTARLWDTRAASRAVRTFHGHEGDVNTVKFFPDGYRFGTGSDDGTCR 273
>At4g34380.1 68417.m04884 transducin family protein / WD-40 repeat
family protein contains 7 WD-40 repeats (PF00400);
similar to Myosin heavy chain kinase B (MHCK
B).(SP:P90648) [Dictyostelium discoideum]
Length = 495
Score = 38.3 bits (85), Expect = 0.005
Identities = 27/96 (28%), Positives = 48/96 (50%), Gaps = 5/96 (5%)
Frame = +1
Query: 196 NIVTQTLLVLKLEILFMEFSNNLLITMEATRRSWKLQFV-AHKANVNCLAMGHKSNQVLA 372
N VT + + I++ S+ L+ E ++RS+ + HK+ V CL + + +L
Sbjct: 325 NAVTALAVKSQSSIVYCGSSDGLVNYWERSKRSFTGGILKGHKSAVLCLGI---AGNLLL 381
Query: 373 TGGDDKKVNLW----AIGRQSCLMSLSGHTTPVECV 468
+G DK + +W + CL L+GH PV+C+
Sbjct: 382 SGSADKNICVWRRDPSDKSHQCLSVLTGHMGPVKCL 417
Score = 29.1 bits (62), Expect = 2.8
Identities = 14/41 (34%), Positives = 19/41 (46%)
Frame = +1
Query: 385 DKKVNLWAIGRQSCLMSLSGHTTPVECVCFGHSEDLVCAGS 507
D + +W I CL S+ H + V G +DLV GS
Sbjct: 256 DTTIKVWRIADSKCLESIHAHDDAINSVMSGF-DDLVFTGS 295
>At2g22040.1 68415.m02617 transducin family protein / WD-40 repeat
family protein similar to Pop3 (GI:3434986)
[Schizosaccharomyces pombe]; contains Pfam PF00400: WD
domain, G-beta repeat (6 copies, 2 weak);
Length = 312
Score = 38.3 bits (85), Expect = 0.005
Identities = 17/44 (38%), Positives = 25/44 (56%)
Frame = +3
Query: 519 LKIWDLEAAKLLRTFTGHXGAIKCMDFHPYGDYLTTGSCDSNVK 650
+KIW+L+ KL + TGH + DF G+YL T S D+ +
Sbjct: 241 VKIWNLDGFKLEKVLTGHERWVWDCDFSMDGEYLVTASSDTTAR 284
Score = 28.3 bits (60), Expect = 5.0
Identities = 25/72 (34%), Positives = 33/72 (45%), Gaps = 2/72 (2%)
Frame = +1
Query: 298 KLQFVAHKANV-NCLAMGHKSNQVLATGGDDKKVNLWAIGRQSCLMSLSGHTTPV-ECVC 471
KLQ AH +++ CL N+ LAT DK V +W + L+GH V +C
Sbjct: 212 KLQ--AHNSHILKCLLS--PGNKYLATASSDKTVKIWNLDGFKLEKVLTGHERWVWDCDF 267
Query: 472 FGHSEDLVCAGS 507
E LV A S
Sbjct: 268 SMDGEYLVTASS 279
>At5g05970.1 68418.m00661 transducin family protein / WD-40 repeat
family protein contains similarity to regulatory protein
Nedd1; contains Pfam PF00400: WD domain, G-beta repeat
(6 copies, 2 weak)|19804256|gb|AV785466.1|AV785466
Length = 781
Score = 37.9 bits (84), Expect = 0.006
Identities = 20/56 (35%), Positives = 26/56 (46%), Gaps = 1/56 (1%)
Frame = +1
Query: 337 LAMGHKSNQVLATGGDDKKVNLW-AIGRQSCLMSLSGHTTPVECVCFGHSEDLVCA 501
L S +L T GDD V+LW GR + L H+ P VCF S + + A
Sbjct: 184 LDYSRSSRHLLVTAGDDGTVHLWDTTGRSPKMSWLKQHSAPTAGVCFSPSNEKIIA 239
Score = 35.9 bits (79), Expect = 0.025
Identities = 12/54 (22%), Positives = 30/54 (55%)
Frame = +1
Query: 328 VNCLAMGHKSNQVLATGGDDKKVNLWAIGRQSCLMSLSGHTTPVECVCFGHSED 489
++ ++ K ++ + +GG + V +W + R+ C+ L GHT+ + V + ++
Sbjct: 95 LSAISFSKKGSRYICSGGTGQIVKIWDLQRKLCIKKLKGHTSTITGVMYNCKDE 148
Score = 29.9 bits (64), Expect = 1.6
Identities = 14/32 (43%), Positives = 21/32 (65%)
Frame = +1
Query: 328 VNCLAMGHKSNQVLATGGDDKKVNLWAIGRQS 423
VN + H +N V+A+ G+DKK++LW QS
Sbjct: 46 VNSVKWNH-TNLVVASTGEDKKISLWRKNGQS 76
>At3g21540.1 68416.m02717 transducin family protein / WD-40 repeat
family protein contains Pfam profile: PF00400 WD domain,
G-beta repeat (10 copies); similar to WD-repeat protein
3 (SP:Q9UNX4) [Homo sapiens]
Length = 955
Score = 37.9 bits (84), Expect = 0.006
Identities = 14/48 (29%), Positives = 26/48 (54%)
Frame = +3
Query: 504 FTTGALKIWDLEAAKLLRTFTGHXGAIKCMDFHPYGDYLTTGSCDSNV 647
+ G+++IWD E F H GA+ + ++ G L +GS D+++
Sbjct: 83 YADGSIRIWDTEKGTCEVNFNSHKGAVTALRYNKVGSMLASGSKDNDI 130
Score = 37.1 bits (82), Expect = 0.011
Identities = 14/44 (31%), Positives = 24/44 (54%)
Frame = +3
Query: 519 LKIWDLEAAKLLRTFTGHXGAIKCMDFHPYGDYLTTGSCDSNVK 650
L++WDLE ++ +GH + +D P Y+ TGS D ++
Sbjct: 172 LRVWDLETQHCMQIVSGHHSEVWSVDTDPEERYVVTGSADQELR 215
Score = 36.7 bits (81), Expect = 0.014
Identities = 16/44 (36%), Positives = 24/44 (54%)
Frame = +3
Query: 519 LKIWDLEAAKLLRTFTGHXGAIKCMDFHPYGDYLTTGSCDSNVK 650
+K WD + + L T GH I C+ GD+L TGS D +++
Sbjct: 648 VKYWDADKFEHLLTLEGHHAEIWCLAISNRGDFLVTGSHDRSMR 691
Score = 33.9 bits (74), Expect = 0.100
Identities = 14/47 (29%), Positives = 26/47 (55%)
Frame = +3
Query: 519 LKIWDLEAAKLLRTFTGHXGAIKCMDFHPYGDYLTTGSCDSNVKPMG 659
+K++ +++ K + GH + C+D G+ + TGS D N+K G
Sbjct: 564 VKVFYMDSLKFYLSLYGHKLPVMCIDISSDGELIVTGSQDKNLKIWG 610
Score = 33.5 bits (73), Expect = 0.13
Identities = 19/59 (32%), Positives = 29/59 (49%)
Frame = +1
Query: 298 KLQFVAHKANVNCLAMGHKSNQVLATGGDDKKVNLWAIGRQSCLMSLSGHTTPVECVCF 474
++ F +HK V L +K +LA+G D + LW + +S L L GH V + F
Sbjct: 99 EVNFNSHKGAVTALRY-NKVGSMLASGSKDNDIILWDVVGESGLFRLRGHRDQVTDLVF 156
Score = 30.3 bits (65), Expect = 1.2
Identities = 21/84 (25%), Positives = 34/84 (40%)
Frame = +1
Query: 256 NNLLITMEATRRSWKLQFVAHKANVNCLAMGHKSNQVLATGGDDKKVNLWAIGRQSCLMS 435
+N +I + S + H+ V L + L + DK + +W + Q C+
Sbjct: 127 DNDIILWDVVGESGLFRLRGHRDQVTDLVF-LDGGKKLVSSSKDKFLRVWDLETQHCMQI 185
Query: 436 LSGHTTPVECVCFGHSEDLVCAGS 507
+SGH + V V E V GS
Sbjct: 186 VSGHHSEVWSVDTDPEERYVVTGS 209
Score = 28.7 bits (61), Expect = 3.8
Identities = 13/42 (30%), Positives = 20/42 (47%)
Frame = +1
Query: 385 DKKVNLWAIGRQSCLMSLSGHTTPVECVCFGHSEDLVCAGSQ 510
D V ++ + +SL GH PV C+ +L+ GSQ
Sbjct: 561 DSTVKVFYMDSLKFYLSLYGHKLPVMCIDISSDGELIVTGSQ 602
>At2g32700.5 68415.m04001 WD-40 repeat family protein contains 7
WD-40 repeats ; similar to LEUNIG
(GP:11141605)[Arabidopsis thaliana]
Length = 785
Score = 37.9 bits (84), Expect = 0.006
Identities = 19/43 (44%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
Frame = +3
Query: 519 LKIWDL-EAAKLLRTFTGHXGAIKCMDFHPYGDYLTTGSCDSN 644
+KIWD + LRT +GH + +DFHP L SCDSN
Sbjct: 574 IKIWDASDPGYFLRTISGHAAPVMSIDFHPKKTELLC-SCDSN 615
>At2g32700.4 68415.m04000 WD-40 repeat family protein contains 7
WD-40 repeats ; similar to LEUNIG
(GP:11141605)[Arabidopsis thaliana]
Length = 787
Score = 37.9 bits (84), Expect = 0.006
Identities = 19/43 (44%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
Frame = +3
Query: 519 LKIWDL-EAAKLLRTFTGHXGAIKCMDFHPYGDYLTTGSCDSN 644
+KIWD + LRT +GH + +DFHP L SCDSN
Sbjct: 576 IKIWDASDPGYFLRTISGHAAPVMSIDFHPKKTELLC-SCDSN 617
>At2g32700.3 68415.m03999 WD-40 repeat family protein contains 7
WD-40 repeats ; similar to LEUNIG
(GP:11141605)[Arabidopsis thaliana]
Length = 787
Score = 37.9 bits (84), Expect = 0.006
Identities = 19/43 (44%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
Frame = +3
Query: 519 LKIWDL-EAAKLLRTFTGHXGAIKCMDFHPYGDYLTTGSCDSN 644
+KIWD + LRT +GH + +DFHP L SCDSN
Sbjct: 576 IKIWDASDPGYFLRTISGHAAPVMSIDFHPKKTELLC-SCDSN 617
>At2g32700.2 68415.m03998 WD-40 repeat family protein contains 7
WD-40 repeats ; similar to LEUNIG
(GP:11141605)[Arabidopsis thaliana]
Length = 787
Score = 37.9 bits (84), Expect = 0.006
Identities = 19/43 (44%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
Frame = +3
Query: 519 LKIWDL-EAAKLLRTFTGHXGAIKCMDFHPYGDYLTTGSCDSN 644
+KIWD + LRT +GH + +DFHP L SCDSN
Sbjct: 576 IKIWDASDPGYFLRTISGHAAPVMSIDFHPKKTELLC-SCDSN 617
>At2g32700.1 68415.m03997 WD-40 repeat family protein contains 7
WD-40 repeats ; similar to LEUNIG
(GP:11141605)[Arabidopsis thaliana]
Length = 787
Score = 37.9 bits (84), Expect = 0.006
Identities = 19/43 (44%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
Frame = +3
Query: 519 LKIWDL-EAAKLLRTFTGHXGAIKCMDFHPYGDYLTTGSCDSN 644
+KIWD + LRT +GH + +DFHP L SCDSN
Sbjct: 576 IKIWDASDPGYFLRTISGHAAPVMSIDFHPKKTELLC-SCDSN 617
>At2g47410.1 68415.m05917 transducin family protein / WD-40 repeat
family protein contains 5 WD-40 repeats (PF00400);
similar to WDR protein, form B (GI:14970593) [Mus
musculus]
Length = 1589
Score = 37.5 bits (83), Expect = 0.008
Identities = 19/64 (29%), Positives = 32/64 (50%)
Frame = +1
Query: 316 HKANVNCLAMGHKSNQVLATGGDDKKVNLWAIGRQSCLMSLSGHTTPVECVCFGHSEDLV 495
H+ V C A+ +S + + TG DD+ V +W++ CL S GH + + + LV
Sbjct: 304 HRNAVYC-AIFDRSGRYVITGSDDRLVKIWSMETALCLASCRGHEGDITDLAVSSNNALV 362
Query: 496 CAGS 507
+ S
Sbjct: 363 ASAS 366
Score = 28.3 bits (60), Expect = 5.0
Identities = 13/33 (39%), Positives = 17/33 (51%)
Frame = +3
Query: 552 LRTFTGHXGAIKCMDFHPYGDYLTTGSCDSNVK 650
++ GH A+ C F G Y+ TGS D VK
Sbjct: 298 IKKLRGHRNAVYCAIFDRSGRYVITGSDDRLVK 330
Score = 27.9 bits (59), Expect = 6.6
Identities = 13/53 (24%), Positives = 27/53 (50%)
Frame = +1
Query: 316 HKANVNCLAMGHKSNQVLATGGDDKKVNLWAIGRQSCLMSLSGHTTPVECVCF 474
H+ ++ LA+ +N ++A+ +D + +W + + L GHT V + F
Sbjct: 346 HEGDITDLAVS-SNNALVASASNDFVIRVWRLPDGMPISVLRGHTGAVTAIAF 397
>At2g16405.1 68415.m01878 transducin family protein / WD-40 repeat
family protein contains 7 WD-40 repeats (PF00400);
similar to WD-repeat protein 13 (SP:Q9H1Z4) [Homo
sapiens]
Length = 482
Score = 37.5 bits (83), Expect = 0.008
Identities = 20/75 (26%), Positives = 36/75 (48%), Gaps = 3/75 (4%)
Frame = +1
Query: 286 RRSWKLQFVAHKANVN-CLAMGHKSNQVLATGGDDKKVNLWAIGR--QSCLMSLSGHTTP 456
R S KL H+ + C + + + + G +D V + + + +C+ L GH P
Sbjct: 391 RCSLKLAPRIHRIQASFCPLLSLEKGEYIVAGSEDSNVYFYDLTKPKHTCVNKLQGHRFP 450
Query: 457 VECVCFGHSEDLVCA 501
V CV + H E+L+ +
Sbjct: 451 VMCVAWNHGENLLAS 465
Score = 29.5 bits (63), Expect = 2.1
Identities = 15/57 (26%), Positives = 26/57 (45%)
Frame = +1
Query: 304 QFVAHKANVNCLAMGHKSNQVLATGGDDKKVNLWAIGRQSCLMSLSGHTTPVECVCF 474
Q H +V +NQ +A+ DK + +W + R C+ + G +P C+ F
Sbjct: 211 QLTGHSKDVTDFDFS-SNNQYIASSSLDKTIRVWELSRGVCIRVIYG-ISPQYCIRF 265
Score = 27.5 bits (58), Expect = 8.7
Identities = 11/39 (28%), Positives = 18/39 (46%)
Frame = +3
Query: 534 LEAAKLLRTFTGHXGAIKCMDFHPYGDYLTTGSCDSNVK 650
LE +L+ TGH + DF Y+ + S D ++
Sbjct: 203 LEEPSVLKQLTGHSKDVTDFDFSSNNQYIASSSLDKTIR 241
>At1g47610.1 68414.m05288 transducin family protein / WD-40 repeat
family protein contains 7 WD-40 repeats (PF00400);
similar to En/Spm-like transposon protein (GI:2739374)
[Arabidopsis thaliana]
Length = 351
Score = 37.5 bits (83), Expect = 0.008
Identities = 21/56 (37%), Positives = 33/56 (58%), Gaps = 2/56 (3%)
Frame = +1
Query: 307 FVAHKANVNCLAMGHKSNQVLATGGDDKKVNLWAI-GR-QSCLMSLSGHTTPVECV 468
F H+ V C+A K +L +G DKK+ +W G+ +C+ L+GHT PV+C+
Sbjct: 262 FKKHRLAVLCIAAAGK---LLFSGAADKKICVWRREGKVHTCVSVLTGHTGPVKCL 314
>At1g15750.2 68414.m01890 WD-40 repeat family protein contains 10
WD-40 repeats (PF00400) (1 weak)
Length = 1131
Score = 37.1 bits (82), Expect = 0.011
Identities = 22/80 (27%), Positives = 35/80 (43%), Gaps = 1/80 (1%)
Frame = +1
Query: 301 LQFVAHKANVNCLAMGHKSNQV-LATGGDDKKVNLWAIGRQSCLMSLSGHTTPVECVCFG 477
L+ AH VN ++ + Q+ + T GDDK + +W + GH PV VC
Sbjct: 456 LEIDAHVGGVNDISFSTPNKQLCVITCGDDKTIKVWDAATGVKRHTFEGHEAPVYSVCPH 515
Query: 478 HSEDLVCAGSQLVP*KFGIW 537
+ E++ S + K W
Sbjct: 516 YKENIQFIFSTALDGKIKAW 535
>At1g15750.1 68414.m01889 WD-40 repeat family protein contains 10
WD-40 repeats (PF00400) (1 weak)
Length = 1131
Score = 37.1 bits (82), Expect = 0.011
Identities = 22/80 (27%), Positives = 35/80 (43%), Gaps = 1/80 (1%)
Frame = +1
Query: 301 LQFVAHKANVNCLAMGHKSNQV-LATGGDDKKVNLWAIGRQSCLMSLSGHTTPVECVCFG 477
L+ AH VN ++ + Q+ + T GDDK + +W + GH PV VC
Sbjct: 456 LEIDAHVGGVNDISFSTPNKQLCVITCGDDKTIKVWDAATGVKRHTFEGHEAPVYSVCPH 515
Query: 478 HSEDLVCAGSQLVP*KFGIW 537
+ E++ S + K W
Sbjct: 516 YKENIQFIFSTALDGKIKAW 535
>At4g32551.1 68417.m04633 WD-40 repeat family protein (LEUNIG)
contains seven G-protein beta WD-40 repeats; beta
transducin-like protein, Podospora anserina, gb:L28125;
contains Pfam profiles PF04503: Single-stranded DNA
binding protein, SSDP; PF00400:WD domain, G-beta repeat;
identical to cDNA LEUNIG (LEUNIG) GI:11141604
Length = 931
Score = 36.7 bits (81), Expect = 0.014
Identities = 17/43 (39%), Positives = 25/43 (58%), Gaps = 1/43 (2%)
Frame = +3
Query: 519 LKIWDLE-AAKLLRTFTGHXGAIKCMDFHPYGDYLTTGSCDSN 644
+++WD + LRTF GH + +DFHP D L SCD++
Sbjct: 717 VRVWDADNKGYSLRTFMGHSSMVTSLDFHPIKDDLIC-SCDND 758
Score = 29.5 bits (63), Expect = 2.1
Identities = 13/39 (33%), Positives = 21/39 (53%)
Frame = +1
Query: 394 VNLWAIGRQSCLMSLSGHTTPVECVCFGHSEDLVCAGSQ 510
VN+ + Q+ SL GH P+ VC+ S D + + S+
Sbjct: 800 VNVLDVETQAIRHSLQGHANPINSVCWDPSGDFLASVSE 838
Score = 28.3 bits (60), Expect = 5.0
Identities = 13/62 (20%), Positives = 29/62 (46%), Gaps = 1/62 (1%)
Frame = +1
Query: 277 EATRRSWKLQ-FVAHKANVNCLAMGHKSNQVLATGGDDKKVNLWAIGRQSCLMSLSGHTT 453
+A + + L+ F+ H + V L + ++ + +D ++ W+I SC G +T
Sbjct: 721 DADNKGYSLRTFMGHSSMVTSLDFHPIKDDLICSCDNDNEIRYWSINNGSCTRVYKGGST 780
Query: 454 PV 459
+
Sbjct: 781 QI 782
>At3g51930.1 68416.m05696 transducin family protein / WD-40 repeat
family protein contains 7 WD-40 repeats (PF00400);
myosin heavy chain kinase B (SP:P90648)(GI:1903458)
[Dictyostelium discoideum]
Length = 415
Score = 36.7 bits (81), Expect = 0.014
Identities = 18/65 (27%), Positives = 34/65 (52%)
Frame = +1
Query: 283 TRRSWKLQFVAHKANVNCLAMGHKSNQVLATGGDDKKVNLWAIGRQSCLMSLSGHTTPVE 462
TRR+ K ++ H +++CLA+ H ++ +G DK + +W + CL S+ H +
Sbjct: 162 TRRNHKRLWIEHADSISCLAV-HAG--IIYSGSWDKTLKVWRLSDLKCLESIKAHDDAIN 218
Query: 463 CVCFG 477
+ G
Sbjct: 219 GLVAG 223
>At3g27640.1 68416.m03452 transducin family protein / WD-40 repeat
family protein contains seven WD-40 G-protein beta
repeats; similar to RA-regulated nuclear
matrix-associated protein (GI:14161320) {Homo sapiens}
Length = 535
Score = 36.7 bits (81), Expect = 0.014
Identities = 17/41 (41%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
Frame = +3
Query: 519 LKIWDLEAAKLLRTFTGHXGAIKCMDFHP-YGDYLTTGSCD 638
+K+WD+E K GH G +K M HP D L +GS D
Sbjct: 152 IKVWDVEENKCTGVLIGHTGTVKSMCSHPTNSDLLVSGSRD 192
Score = 34.3 bits (75), Expect = 0.075
Identities = 19/65 (29%), Positives = 31/65 (47%), Gaps = 1/65 (1%)
Frame = +1
Query: 352 KSNQVLATGGDDKKVNLWAIGRQSCLMSLSGHTTPVECVC-FGHSEDLVCAGSQLVP*KF 528
K + L T D+ + +W + C L GHT V+ +C + DL+ +GS+ F
Sbjct: 138 KGDSCLLTASGDQTIKVWDVEENKCTGVLIGHTGTVKSMCSHPTNSDLLVSGSR--DGCF 195
Query: 529 GIWKL 543
+W L
Sbjct: 196 ALWDL 200
>At5g64730.1 68418.m08140 transducin family protein / WD-40 repeat
family protein contains 7 WD-40 repeats (PF00400);
similar to Will die slowly protein (SP:Q9V3J8) [Fruit
fly] {Drosophila m.]
Length = 299
Score = 36.3 bits (80), Expect = 0.019
Identities = 15/46 (32%), Positives = 23/46 (50%)
Frame = +3
Query: 513 GALKIWDLEAAKLLRTFTGHXGAIKCMDFHPYGDYLTTGSCDSNVK 650
G + WDL AK+L F H + + +HP D + T S D ++
Sbjct: 250 GLVFFWDLVDAKVLSKFRAHDLVVTSVSYHPKEDCMLTSSVDGTIR 295
Score = 30.3 bits (65), Expect = 1.2
Identities = 9/41 (21%), Positives = 21/41 (51%)
Frame = +3
Query: 528 WDLEAAKLLRTFTGHXGAIKCMDFHPYGDYLTTGSCDSNVK 650
WD+ +++R F GH G + + F+ + + D +++
Sbjct: 87 WDVSTGRVIRKFRGHDGEVNAVKFNDSSSVVVSAGFDRSLR 127
>At4g35370.1 68417.m05025 transducin family protein / WD-40 repeat
family protein contains 4 (3 significant) WD-40 repeats;
similar to periodic tryptophan protein 1 homolog
(Keratinocyte protein IEF SSP 9502) (PWP1)(SP:Q13610)
(PIR2:I39360) [Homo sapiens]
Length = 414
Score = 36.3 bits (80), Expect = 0.019
Identities = 14/59 (23%), Positives = 33/59 (55%), Gaps = 1/59 (1%)
Frame = +1
Query: 337 LAMGHKSNQVLATGGDDKKVNLWAIGRQSCLMSLSGHTTPVECVCF-GHSEDLVCAGSQ 510
L ++ ++A+G +DKKV +W + C +++ H V V + ++ +++ +GS+
Sbjct: 220 LTFNWENRNIVASGSEDKKVKVWDVATGKCKVTMEHHEKKVHAVAWNNYTPEVLLSGSR 278
>At2g45540.1 68415.m05663 WD-40 repeat family protein / beige-related
contains Pfam PF02138: Beige/BEACH domain; contains Pfam
PF00400: WD domain, G-beta repeat (3 copies)
Length = 2946
Score = 36.3 bits (80), Expect = 0.019
Identities = 16/44 (36%), Positives = 24/44 (54%)
Frame = +3
Query: 516 ALKIWDLEAAKLLRTFTGHXGAIKCMDFHPYGDYLTTGSCDSNV 647
++K+ + AK L T GH + C+ P ++L TGS DS V
Sbjct: 2649 SIKLVSSDGAKTLETAFGHCAPVTCLALSPDNNFLVTGSRDSTV 2692
>At2g05720.1 68415.m00613 transducin family protein / WD-40 repeat
family protein Similar to U4/U6 small nuclear
ribonucleoprotein hPrp4 (gi:2708305)[Homo sapiens];
contains 4 WD-40 repeats
Length = 276
Score = 36.3 bits (80), Expect = 0.019
Identities = 14/43 (32%), Positives = 24/43 (55%)
Frame = +3
Query: 522 KIWDLEAAKLLRTFTGHXGAIKCMDFHPYGDYLTTGSCDSNVK 650
++WDL A+ + F GH + +DF P G +L +G D+ +
Sbjct: 155 RVWDLRTARNILIFQGHIKQVLSVDFSPNGYHLASGGEDNQCR 197
Score = 30.7 bits (66), Expect = 0.93
Identities = 16/43 (37%), Positives = 20/43 (46%), Gaps = 1/43 (2%)
Frame = +3
Query: 522 KIWDLEAAKLLRTFTGHXGAIKCMDFHPYGDY-LTTGSCDSNV 647
+IWDL KLL H + + + P Y L T S D NV
Sbjct: 197 RIWDLRMRKLLYIIPAHVNLVSQVKYEPQERYFLATASHDMNV 239
Score = 27.5 bits (58), Expect = 8.7
Identities = 19/59 (32%), Positives = 28/59 (47%), Gaps = 2/59 (3%)
Frame = +1
Query: 289 RSWKLQFV--AHKANVNCLAMGHKSNQVLATGGDDKKVNLWAIGRQSCLMSLSGHTTPV 459
R KL ++ AH V+ + + LAT D VN+W+ S + SL GH + V
Sbjct: 202 RMRKLLYIIPAHVNLVSQVKYEPQERYFLATASHDMNVNIWSGRDFSLVKSLVGHESKV 260
>At5g52820.1 68418.m06556 WD-40 repeat family protein / notchless
protein, putative similar to notchless [Xenopus laevis]
GI:3687833; contains Pfam PF00400: WD domain, G-beta
repeat (8 copies)
Length = 473
Score = 35.9 bits (79), Expect = 0.025
Identities = 19/62 (30%), Positives = 30/62 (48%), Gaps = 1/62 (1%)
Frame = +3
Query: 468 VFWSF-RRLSMCWFTTGALKIWDLEAAKLLRTFTGHXGAIKCMDFHPYGDYLTTGSCDSN 644
V WS RL + LKIW++ KL + GH + +D+ P G+ + +G D
Sbjct: 408 VSWSADSRLLLSGSKDSTLKIWEIRTKKLKQDLPGHADEVFAVDWSPDGEKVVSGGKDRV 467
Query: 645 VK 650
+K
Sbjct: 468 LK 469
Score = 33.5 bits (73), Expect = 0.13
Identities = 16/46 (34%), Positives = 24/46 (52%)
Frame = +1
Query: 373 TGGDDKKVNLWAIGRQSCLMSLSGHTTPVECVCFGHSEDLVCAGSQ 510
T D +W I + ++ LSGHT V CV +G + ++ GSQ
Sbjct: 216 TSSKDGDARIWDITLKKSIICLSGHTLAVTCVKWG-GDGIIYTGSQ 260
Score = 32.3 bits (70), Expect = 0.30
Identities = 13/32 (40%), Positives = 19/32 (59%)
Frame = +3
Query: 555 RTFTGHXGAIKCMDFHPYGDYLTTGSCDSNVK 650
+T GH A+ C+ F P G L +GS D+ V+
Sbjct: 103 QTIAGHAEAVLCVSFSPDGKQLASGSGDTTVR 134
Score = 29.9 bits (64), Expect = 1.6
Identities = 15/46 (32%), Positives = 24/46 (52%)
Frame = +3
Query: 513 GALKIWDLEAAKLLRTFTGHXGAIKCMDFHPYGDYLTTGSCDSNVK 650
G +IWD+ K + +GH A+ C+ + G + TGS D +K
Sbjct: 221 GDARIWDITLKKSIICLSGHTLAVTCVKWGGDG-IIYTGSQDCTIK 265
Score = 29.1 bits (62), Expect = 2.8
Identities = 18/65 (27%), Positives = 29/65 (44%)
Frame = +1
Query: 316 HKANVNCLAMGHKSNQVLATGGDDKKVNLWAIGRQSCLMSLSGHTTPVECVCFGHSEDLV 495
H V C++ Q LA+G D V LW + ++ L + GH V V + +
Sbjct: 108 HAEAVLCVSFSPDGKQ-LASGSGDTTVRLWDLYTETPLFTCKGHKNWVLTVAWSPDGKHL 166
Query: 496 CAGSQ 510
+GS+
Sbjct: 167 VSGSK 171
>At5g25150.1 68418.m02981 transducin family protein / WD-40 repeat
family protein similar to TBP-associated factor
(GI:1732075) [Homo sapiens] and to 100 kDa subunit of
Pol II transcription factor (GI:1491718) {Homo sapiens];
contains Pfam PF00400: WD domain, G-beta repeat (6
copies)|8689032|gb|AV528749.1|AV528749
Length = 666
Score = 35.9 bits (79), Expect = 0.025
Identities = 14/46 (30%), Positives = 22/46 (47%)
Frame = +3
Query: 513 GALKIWDLEAAKLLRTFTGHXGAIKCMDFHPYGDYLTTGSCDSNVK 650
G + +WDL A+ + GH + + + G L +GS D VK
Sbjct: 563 GTIMMWDLSTARCITPLMGHNSCVWSLSYSGEGSLLASGSADCTVK 608
Score = 35.1 bits (77), Expect = 0.043
Identities = 15/43 (34%), Positives = 24/43 (55%)
Frame = +3
Query: 522 KIWDLEAAKLLRTFTGHXGAIKCMDFHPYGDYLTTGSCDSNVK 650
+IW ++ + LR GH + D+HP +Y+ TGS D V+
Sbjct: 485 RIWSMDRIQPLRIMAGHLSDV---DWHPNCNYIATGSSDKTVR 524
Score = 34.3 bits (75), Expect = 0.075
Identities = 11/43 (25%), Positives = 23/43 (53%)
Frame = +3
Query: 519 LKIWDLEAAKLLRTFTGHXGAIKCMDFHPYGDYLTTGSCDSNV 647
+++WD++ + +R F GH + + P G Y+ +G D +
Sbjct: 523 VRLWDVQTGECVRIFIGHRSMVLSLAMSPDGRYMASGDEDGTI 565
Score = 31.1 bits (67), Expect = 0.70
Identities = 13/37 (35%), Positives = 18/37 (48%)
Frame = +1
Query: 349 HKSNQVLATGGDDKKVNLWAIGRQSCLMSLSGHTTPV 459
H + +ATG DK V LW + C+ GH + V
Sbjct: 508 HPNCNYIATGSSDKTVRLWDVQTGECVRIFIGHRSMV 544
>At2g43770.1 68415.m05441 transducin family protein / WD-40 repeat
family protein contains 7 WD-40 repeats (PF00400);
similar to U5 snRNP-specific 40 kDa protein (GI:3820594)
[Homo sapiens]
Length = 343
Score = 35.9 bits (79), Expect = 0.025
Identities = 15/43 (34%), Positives = 20/43 (46%)
Frame = +3
Query: 519 LKIWDLEAAKLLRTFTGHXGAIKCMDFHPYGDYLTTGSCDSNV 647
+K+WDL + T GH I M P G YL T D+ +
Sbjct: 204 VKVWDLRKGEATMTLEGHQDTITGMSLSPDGSYLLTNGMDNKL 246
Score = 29.9 bits (64), Expect = 1.6
Identities = 12/41 (29%), Positives = 20/41 (48%)
Frame = +3
Query: 525 IWDLEAAKLLRTFTGHXGAIKCMDFHPYGDYLTTGSCDSNV 647
IWD + + + GH G++ FHP + + S D N+
Sbjct: 298 IWDTTSRRTIYKLPGHTGSVNECVFHPTEPIIGSCSSDKNI 338
Score = 28.7 bits (61), Expect = 3.8
Identities = 13/54 (24%), Positives = 26/54 (48%)
Frame = +1
Query: 286 RRSWKLQFVAHKANVNCLAMGHKSNQVLATGGDDKKVNLWAIGRQSCLMSLSGH 447
R+ +Q K + ++ ++++ TGG D V +W + + M+L GH
Sbjct: 169 RQRGAIQTFPDKYQITAVSFSDAADKIF-TGGVDNDVKVWDLRKGEATMTLEGH 221
Score = 27.5 bits (58), Expect = 8.7
Identities = 14/38 (36%), Positives = 21/38 (55%)
Frame = +3
Query: 534 LEAAKLLRTFTGHXGAIKCMDFHPYGDYLTTGSCDSNV 647
LEA +L +GH A+ M F+P G + +GS D +
Sbjct: 42 LEAPIML--LSGHPSAVYTMKFNPAGTLIASGSHDREI 77
>At5g58230.1 68418.m07290 WD-40 repeat protein (MSI1) contains 6
WD-40 repeats (PF0400); identical to WD-40 repeat
protein (SP:O22467) [Arabidopsis thaliana]
Length = 424
Score = 35.5 bits (78), Expect = 0.033
Identities = 22/65 (33%), Positives = 31/65 (47%), Gaps = 1/65 (1%)
Frame = +1
Query: 310 VAHKANVNCLAMGHKSNQVLATGGDDKKVNLWAIGRQS-CLMSLSGHTTPVECVCFGHSE 486
VAH VNCLA + V+ATG DK V L+ + + S L + H V V +
Sbjct: 270 VAHSMEVNCLAFNPFNEWVVATGSTDKTVKLFDLRKLSTALHTFDSHKEEVFQVGWNPKN 329
Query: 487 DLVCA 501
+ + A
Sbjct: 330 ETILA 334
Score = 34.7 bits (76), Expect = 0.057
Identities = 17/48 (35%), Positives = 28/48 (58%), Gaps = 4/48 (8%)
Frame = +3
Query: 519 LKIWDLE---AAKLLRTFTGHXGAIKCMDFHPYGDY-LTTGSCDSNVK 650
L IWDL A+K +++ H + C+ F+P+ ++ + TGS D VK
Sbjct: 252 LLIWDLRSPSASKPVQSVVAHSMEVNCLAFNPFNEWVVATGSTDKTVK 299
Score = 29.1 bits (62), Expect = 2.8
Identities = 19/71 (26%), Positives = 34/71 (47%), Gaps = 4/71 (5%)
Frame = +1
Query: 307 FVAHKANVNCLAMGHKSNQVLATGGDDKKVNLWAIGRQSC---LMSLSGHTTPVECVCFG 477
F AH+ V +A + + + GDD+ + +W + S + S+ H+ V C+ F
Sbjct: 223 FKAHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRSPSASKPVQSVVAHSMEVNCLAFN 282
Query: 478 -HSEDLVCAGS 507
+E +V GS
Sbjct: 283 PFNEWVVATGS 293
>At2g41500.1 68415.m05127 WD-40 repeat family protein / small
nuclear ribonucleoprotein Prp4p-related similar to U4/U6
small nuclear ribonucleoprotein hPrp4 (GP:2708305) {Homo
sapiens}; contains Pfam PF00400: WD domain, G-beta
repeat (7 copies)|19877698|gb|AU238529.1|AU238529
Length = 554
Score = 35.5 bits (78), Expect = 0.033
Identities = 17/39 (43%), Positives = 22/39 (56%)
Frame = +3
Query: 522 KIWDLEAAKLLRTFTGHXGAIKCMDFHPYGDYLTTGSCD 638
K+W + LL+TF GH + + FHP G YL T S D
Sbjct: 323 KLWKTDGT-LLQTFEGHLDRLARVAFHPSGKYLGTTSYD 360
Score = 33.1 bits (72), Expect = 0.17
Identities = 12/43 (27%), Positives = 23/43 (53%)
Frame = +3
Query: 522 KIWDLEAAKLLRTFTGHXGAIKCMDFHPYGDYLTTGSCDSNVK 650
++WDL + + F GH + ++F P G +L +G D+ +
Sbjct: 406 RVWDLRTGRSILVFQGHIKPVFSVNFSPNGYHLASGGEDNQCR 448
Score = 29.9 bits (64), Expect = 1.6
Identities = 17/49 (34%), Positives = 25/49 (51%)
Frame = +1
Query: 313 AHKANVNCLAMGHKSNQVLATGGDDKKVNLWAIGRQSCLMSLSGHTTPV 459
AH V+ + + LAT D KVN+W+ S + SL+GH + V
Sbjct: 463 AHANLVSQVKYEPQEGYFLATASYDMKVNIWSGRDFSLVKSLAGHESKV 511
Score = 27.5 bits (58), Expect = 8.7
Identities = 30/104 (28%), Positives = 45/104 (43%), Gaps = 13/104 (12%)
Frame = +1
Query: 202 VTQTLLVLK------LEILFMEFSNNLLI-TMEATRRSWK-----LQ-FVAHKANVNCLA 342
VT T+ VLK +++F + L + + T + WK LQ F H + +A
Sbjct: 287 VTNTIAVLKDHKERATDVVFSPVDDCLATASADRTAKLWKTDGTLLQTFEGHLDRLARVA 346
Query: 343 MGHKSNQVLATGGDDKKVNLWAIGRQSCLMSLSGHTTPVECVCF 474
H S + L T DK LW I + L+ GH+ V + F
Sbjct: 347 F-HPSGKYLGTTSYDKTWRLWDINTGAELLLQEGHSRSVYGIAF 389
>At1g48870.1 68414.m05474 WD-40 repeat family protein contains Pfam
PF00400: WD domain, G-beta repeat; similar to WD-repeat
protein 5 (WD repeat protein BIG-3) (SP: Q9UGP9) [Homo
sapiens]; similar to rab11 binding protein GI:4512103
from [Bos taurus]
Length = 593
Score = 35.5 bits (78), Expect = 0.033
Identities = 17/40 (42%), Positives = 22/40 (55%)
Frame = +3
Query: 531 DLEAAKLLRTFTGHXGAIKCMDFHPYGDYLTTGSCDSNVK 650
+L AA +++ GH G I + F P G YL TG D VK
Sbjct: 184 ELSAAYMVQKINGHKGKIWTLKFSPDGKYLATGGEDGVVK 223
Score = 27.5 bits (58), Expect = 8.7
Identities = 15/46 (32%), Positives = 20/46 (43%)
Frame = +1
Query: 337 LAMGHKSNQVLATGGDDKKVNLWAIGRQSCLMSLSGHTTPVECVCF 474
L + + +L + DK V LW G CL + H V CV F
Sbjct: 276 LDLAWSDSNLLLSASKDKTVRLWRTGCDQCL-HVFHHNNYVTCVEF 320
>At5g43920.1 68418.m05372 transducin family protein / WD-40 repeat
family protein contains 7 WD-40 repeats (PF00400);
similar to will die slowly protein (WDS) (SP:Q9V3J8)
[Drosophila melanogaster]
Length = 523
Score = 35.1 bits (77), Expect = 0.043
Identities = 19/62 (30%), Positives = 31/62 (50%), Gaps = 4/62 (6%)
Frame = +1
Query: 295 WK--LQFVAHKANVNCL--AMGHKSNQVLATGGDDKKVNLWAIGRQSCLMSLSGHTTPVE 462
WK L+F H+ + + G + +A+G +D +V +W + L LSGH+ V
Sbjct: 430 WKQPLKFSGHRQSKYVIRSCFGGLDSSFIASGSEDSQVYIWNLKNTKPLEVLSGHSMTVN 489
Query: 463 CV 468
CV
Sbjct: 490 CV 491
Score = 33.5 bits (73), Expect = 0.13
Identities = 11/34 (32%), Positives = 21/34 (61%)
Frame = +1
Query: 316 HKANVNCLAMGHKSNQVLATGGDDKKVNLWAIGR 417
H VNC++ K+ ++LA+ DD+ + +W G+
Sbjct: 484 HSMTVNCVSWNPKNPRMLASASDDQTIRIWGPGK 517
Score = 29.1 bits (62), Expect = 2.8
Identities = 13/46 (28%), Positives = 23/46 (50%), Gaps = 1/46 (2%)
Frame = +3
Query: 525 IWDLEAAKLLRTFTGHXGAIKCMDFHPYGD-YLTTGSCDSNVKPMG 659
IW+L+ K L +GH + C+ ++P L + S D ++ G
Sbjct: 469 IWNLKNTKPLEVLSGHSMTVNCVSWNPKNPRMLASASDDQTIRIWG 514
>At3g49180.1 68416.m05375 transducin family protein / WD-40 repeat
family protein contains 5 WD-40 repeats (PF00400);
GTP-binding protein beta chain homolog, Nicotiana
tabacum, PIR:T16970
Length = 438
Score = 35.1 bits (77), Expect = 0.043
Identities = 13/47 (27%), Positives = 27/47 (57%)
Frame = +3
Query: 510 TGALKIWDLEAAKLLRTFTGHXGAIKCMDFHPYGDYLTTGSCDSNVK 650
+G + +W++ KLL+ + GH ++ C+ F L +GS D +++
Sbjct: 99 SGDIYLWEVATGKLLKKWHGHYRSVTCLVFSGDDSLLVSGSQDGSIR 145
Score = 32.3 bits (70), Expect = 0.30
Identities = 15/48 (31%), Positives = 21/48 (43%)
Frame = +1
Query: 367 LATGGDDKKVNLWAIGRQSCLMSLSGHTTPVECVCFGHSEDLVCAGSQ 510
L GG + LW + L GH V C+ F + L+ +GSQ
Sbjct: 93 LVGGGISGDIYLWEVATGKLLKKWHGHYRSVTCLVFSGDDSLLVSGSQ 140
>At2g37670.1 68415.m04620 WD-40 repeat family protein contains 6
WD-40 repeats (PF00400); similiar to rab11 binding
protein (GI:4512103) [Bos taurus]
Length = 903
Score = 35.1 bits (77), Expect = 0.043
Identities = 16/60 (26%), Positives = 30/60 (50%), Gaps = 1/60 (1%)
Frame = +3
Query: 474 WSFRRLSMCWFTTGALKIWDLEAAKLLRTFTGHXGAIKCMDFHPYGD-YLTTGSCDSNVK 650
WS +L + +++WD+E L+ F H + C+ F P + Y +GS D+ ++
Sbjct: 514 WSKSQLLLSSSMDKTVRLWDIETKTCLKLF-AHNDYVTCIQFSPVDENYFLSGSLDAKIR 572
Score = 32.3 bits (70), Expect = 0.30
Identities = 22/70 (31%), Positives = 33/70 (47%), Gaps = 1/70 (1%)
Frame = +1
Query: 337 LAMGHKSNQVLATGGDDKKVNLWAIGRQSCLMSLSGHTTPVECVCFGH-SEDLVCAGSQL 513
L + +Q+L + DK V LW I ++CL L H V C+ F E+ +GS
Sbjct: 510 LDLSWSKSQLLLSSSMDKTVRLWDIETKTCL-KLFAHNDYVTCIQFSPVDENYFLSGS-- 566
Query: 514 VP*KFGIWKL 543
+ K IW +
Sbjct: 567 LDAKIRIWSI 576
>At1g10580.1 68414.m01192 transducin family protein / WD-40 repeat
family protein similar to splicing factor hPRP17
(gi|3283220); contains 7 WD-40 repeats (PF00400);similar
to ESTs emb|F15435 and dbj|AUO62661
Length = 573
Score = 35.1 bits (77), Expect = 0.043
Identities = 16/45 (35%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
Frame = +3
Query: 519 LKIWDL-EAAKLLRTFTGHXGAIKCMDFHPYGDYLTTGSCDSNVK 650
+KIWD+ + K +RT+ GH A++ + F G T D N+K
Sbjct: 307 VKIWDVYNSGKCMRTYMGHAKAVRDICFSNDGSKFLTAGYDKNIK 351
Score = 33.5 bits (73), Expect = 0.13
Identities = 15/56 (26%), Positives = 25/56 (44%), Gaps = 1/56 (1%)
Frame = +1
Query: 316 HKANVNCLAMGHKSNQVLATGGDDKKVNLWAIGRQS-CLMSLSGHTTPVECVCFGH 480
H V+ + K +L + G D KV +W + C+ + GH V +CF +
Sbjct: 281 HTKGVSAIRFFPKQGHLLLSAGMDCKVKIWDVYNSGKCMRTYMGHAKAVRDICFSN 336
>At5g49430.1 68418.m06116 transducin family protein / WD-40 repeat
family protein similar to WD-repeat protein 9
(SP:Q9NSI6) {Homo sapiens}; contains Pfam PF00400: WD
domain, G-beta repeat (4 copies)
Length = 1677
Score = 34.7 bits (76), Expect = 0.057
Identities = 16/44 (36%), Positives = 25/44 (56%)
Frame = +1
Query: 316 HKANVNCLAMGHKSNQVLATGGDDKKVNLWAIGRQSCLMSLSGH 447
H+ V C A+ +S + + TG DD+ V +W++ CL S GH
Sbjct: 244 HRNAVYC-AILDRSGRYVITGSDDRLVKVWSMDTAYCLASCRGH 286
Score = 28.7 bits (61), Expect = 3.8
Identities = 9/28 (32%), Positives = 15/28 (53%)
Frame = +3
Query: 525 IWDLEAAKLLRTFTGHXGAIKCMDFHPY 608
+W+ L+ + TGH + MD HP+
Sbjct: 570 VWNASDGSLVHSLTGHTASTYVMDVHPF 597
>At2g46290.1 68415.m05758 eukaryotic translation initiation factor 3
subunit 2, putative / eIF-3 beta, putative / eIF3i,
putative strong similarity to SP|Q38884 Eukaryotic
translation initiation factor 3 subunit 2 (eIF-3 beta)
(eIF3 p36) (eIF3i) (TGF-beta receptor interacting
protein 1) (TRIP-1) {Arabidopsis thaliana}; contains
Pfam PF00400: WD domain, G-beta repeat (5
copies)|19799885|gb|AU231175.1|AU231175
Length = 355
Score = 34.7 bits (76), Expect = 0.057
Identities = 15/42 (35%), Positives = 20/42 (47%)
Frame = +3
Query: 525 IWDLEAAKLLRTFTGHXGAIKCMDFHPYGDYLTTGSCDSNVK 650
+W + + L T+ GH GA+ C D L TGS D K
Sbjct: 63 VWFADNGERLGTYRGHSGAVWCCDISRDSSRLITGSADQTAK 104
Score = 28.3 bits (60), Expect = 5.0
Identities = 17/48 (35%), Positives = 22/48 (45%), Gaps = 3/48 (6%)
Frame = +3
Query: 516 ALKIWDLEAAKLLRTF---TGHXGAIKCMDFHPYGDYLTTGSCDSNVK 650
A++IWD E KLL+ GH AI + + TGS D K
Sbjct: 198 AIRIWDAETGKLLKQSDEEVGHKEAITSLCKAADDSHFLTGSHDKTAK 245
>At5g27945.1 68418.m03364 transducin family protein / WD-40 repeat
family protein fizzy-related (FZR); contains 6 WD-40
repeats (PF00400); WD-repeat protein,
carrot,(gi:2253631) PIR:T14352
Length = 428
Score = 34.3 bits (75), Expect = 0.075
Identities = 20/52 (38%), Positives = 25/52 (48%), Gaps = 2/52 (3%)
Frame = +1
Query: 289 RSWKLQFVAHKANVNCLAMGHKSNQVLATGG--DDKKVNLWAIGRQSCLMSL 438
R W +F H A V LA +LATGG D K+N W +CL S+
Sbjct: 274 RQWLHRFEEHTAAVRALAWCPFQASLLATGGGVGDGKINFWNTHTGACLNSV 325
>At5g13480.1 68418.m01554 WD-40 repeat family protein similar to
WD-repeat protein WDC146 (SP:Q9C0J8|) {Homo sapiens};
contains 3 weak Pfam PF00400: WD domain, G-beta repeats;
Length = 711
Score = 34.3 bits (75), Expect = 0.075
Identities = 13/44 (29%), Positives = 27/44 (61%), Gaps = 1/44 (2%)
Frame = +3
Query: 519 LKIWDLEAAKLLRTFTGHXGAIKCMDFHP-YGDYLTTGSCDSNV 647
+K++D+ K L++F GH + + +HP + +Y +GS D ++
Sbjct: 334 IKLYDIRTMKELQSFRGHTKDVTSLAWHPCHEEYFVSGSSDGSI 377
Score = 29.9 bits (64), Expect = 1.6
Identities = 12/44 (27%), Positives = 24/44 (54%)
Frame = +3
Query: 519 LKIWDLEAAKLLRTFTGHXGAIKCMDFHPYGDYLTTGSCDSNVK 650
+K+WD + + L + GH + + ++ G++L T S D +K
Sbjct: 292 VKLWDTRSGRELCSLHGHKNIVLSVKWNQNGNWLLTASKDQIIK 335
Score = 29.1 bits (62), Expect = 2.8
Identities = 18/56 (32%), Positives = 28/56 (50%), Gaps = 2/56 (3%)
Frame = +1
Query: 349 HKSNQVLATGGDDKKVNLW--AIGRQSCLMSLSGHTTPVECVCFGHSEDLVCAGSQ 510
H + +L +GG D+ V LW GR+ C SL GH V V + + + + S+
Sbjct: 277 HPTKSLLVSGGKDQLVKLWDTRSGRELC--SLHGHKNIVLSVKWNQNGNWLLTASK 330
>At3g05090.2 68416.m00553 transducin family protein / WD-40 repeat
family protein contains seven G-protein beta WD-40
repeats; similar to uncharacterized KIAA1449 protein
(gi:7959157) [Homo sapiens]
Length = 753
Score = 34.3 bits (75), Expect = 0.075
Identities = 21/74 (28%), Positives = 35/74 (47%)
Frame = +1
Query: 289 RSWKLQFVAHKANVNCLAMGHKSNQVLATGGDDKKVNLWAIGRQSCLMSLSGHTTPVECV 468
+S KL+ H NV L + + + +G D + LW +G+Q CL + + HT V +
Sbjct: 247 KSMKLR--GHTDNVRVLLLD-STGRFCLSGSSDSMIRLWDLGQQRCLHTYAVHTDSVWAL 303
Query: 469 CFGHSEDLVCAGSQ 510
S V +G +
Sbjct: 304 ACNPSFSHVYSGGR 317
Score = 33.9 bits (74), Expect = 0.100
Identities = 23/85 (27%), Positives = 37/85 (43%)
Frame = +1
Query: 253 SNNLLITMEATRRSWKLQFVAHKANVNCLAMGHKSNQVLATGGDDKKVNLWAIGRQSCLM 432
SNN+ + + HK +V LAM + + +L +GG +K + +W S M
Sbjct: 191 SNNISVQSSPSHGYTPTIAKGHKESVYALAM-NDTGTMLVSGGTEKVLRVWDPRTGSKSM 249
Query: 433 SLSGHTTPVECVCFGHSEDLVCAGS 507
L GHT V + + +GS
Sbjct: 250 KLRGHTDNVRVLLLDSTGRFCLSGS 274
Score = 31.5 bits (68), Expect = 0.53
Identities = 14/32 (43%), Positives = 20/32 (62%)
Frame = +1
Query: 316 HKANVNCLAMGHKSNQVLATGGDDKKVNLWAI 411
H V CLA+ K+N V+A+GG +V +W I
Sbjct: 125 HSDYVTCLAVAAKNNNVVASGGLGGEVFIWDI 156
>At3g05090.1 68416.m00552 transducin family protein / WD-40 repeat
family protein contains seven G-protein beta WD-40
repeats; similar to uncharacterized KIAA1449 protein
(gi:7959157) [Homo sapiens]
Length = 753
Score = 34.3 bits (75), Expect = 0.075
Identities = 21/74 (28%), Positives = 35/74 (47%)
Frame = +1
Query: 289 RSWKLQFVAHKANVNCLAMGHKSNQVLATGGDDKKVNLWAIGRQSCLMSLSGHTTPVECV 468
+S KL+ H NV L + + + +G D + LW +G+Q CL + + HT V +
Sbjct: 247 KSMKLR--GHTDNVRVLLLD-STGRFCLSGSSDSMIRLWDLGQQRCLHTYAVHTDSVWAL 303
Query: 469 CFGHSEDLVCAGSQ 510
S V +G +
Sbjct: 304 ACNPSFSHVYSGGR 317
Score = 33.9 bits (74), Expect = 0.100
Identities = 23/85 (27%), Positives = 37/85 (43%)
Frame = +1
Query: 253 SNNLLITMEATRRSWKLQFVAHKANVNCLAMGHKSNQVLATGGDDKKVNLWAIGRQSCLM 432
SNN+ + + HK +V LAM + + +L +GG +K + +W S M
Sbjct: 191 SNNISVQSSPSHGYTPTIAKGHKESVYALAM-NDTGTMLVSGGTEKVLRVWDPRTGSKSM 249
Query: 433 SLSGHTTPVECVCFGHSEDLVCAGS 507
L GHT V + + +GS
Sbjct: 250 KLRGHTDNVRVLLLDSTGRFCLSGS 274
Score = 31.5 bits (68), Expect = 0.53
Identities = 14/32 (43%), Positives = 20/32 (62%)
Frame = +1
Query: 316 HKANVNCLAMGHKSNQVLATGGDDKKVNLWAI 411
H V CLA+ K+N V+A+GG +V +W I
Sbjct: 125 HSDYVTCLAVAAKNNNVVASGGLGGEVFIWDI 156
>At1g49040.1 68414.m05498 stomatal cytokinesis defective / SCD1
protein (SCD1) contains Pfam PF02141: DENN (AEX-3)
domain; contains Pfam PF00400: WD domain, G-beta repeat
(8 copies); identical to stomatal cytokinesis defective
[Arabidopsis thaliana] GI:19743728; supporting cDNA
gi|19743727|gb|AY082605.1|; PMID 12874123
Length = 1187
Score = 34.3 bits (75), Expect = 0.075
Identities = 16/47 (34%), Positives = 24/47 (51%)
Frame = +1
Query: 367 LATGGDDKKVNLWAIGRQSCLMSLSGHTTPVECVCFGHSEDLVCAGS 507
L TG DD +W++ R SC L+ H PV+ V + + + GS
Sbjct: 1035 LITGSDDWTARVWSVSRGSCDAVLACHAGPVQSVEYSPFDKGIITGS 1081
Score = 28.3 bits (60), Expect = 5.0
Identities = 12/42 (28%), Positives = 20/42 (47%)
Frame = +3
Query: 525 IWDLEAAKLLRTFTGHXGAIKCMDFHPYGDYLTTGSCDSNVK 650
+WD + +LL GH + C+ G+ + T + D VK
Sbjct: 923 VWDKQTTQLLEELKGHDSQVSCVKMLS-GERVLTAAHDGTVK 963
Score = 27.5 bits (58), Expect = 8.7
Identities = 12/34 (35%), Positives = 16/34 (47%)
Frame = +1
Query: 367 LATGGDDKKVNLWAIGRQSCLMSLSGHTTPVECV 468
+ +G DD V +W L L GH + V CV
Sbjct: 912 IVSGSDDLSVIVWDKQTTQLLEELKGHDSQVSCV 945
Score = 27.5 bits (58), Expect = 8.7
Identities = 16/51 (31%), Positives = 22/51 (43%)
Frame = +1
Query: 355 SNQVLATGGDDKKVNLWAIGRQSCLMSLSGHTTPVECVCFGHSEDLVCAGS 507
S +LA G D N+W I + L GHT + + ED + GS
Sbjct: 991 STGILAAAGRDTVANIWDIRSGKQMHKLKGHTKWIRSIRM--VEDTLITGS 1039
>At5g66240.2 68418.m08345 transducin family protein / WD-40 repeat
family protein contains Pfam PF00400: WD domain, G-beta
repeat (4 copies, 1 weak); similar to Will die slowly
protein. {Drosophila melanogaster} (SP:Q9V3J8)
{Drosophila melanogaster}
Length = 331
Score = 33.9 bits (74), Expect = 0.100
Identities = 12/42 (28%), Positives = 23/42 (54%)
Frame = +1
Query: 349 HKSNQVLATGGDDKKVNLWAIGRQSCLMSLSGHTTPVECVCF 474
HK++ + T DD + L+ + +CL +++ V+ VCF
Sbjct: 42 HKTSTCMVTASDDDSIRLYDVASATCLKTINSKKYGVDLVCF 83
>At5g66240.1 68418.m08344 transducin family protein / WD-40 repeat
family protein contains Pfam PF00400: WD domain, G-beta
repeat (4 copies, 1 weak); similar to Will die slowly
protein. {Drosophila melanogaster} (SP:Q9V3J8)
{Drosophila melanogaster}
Length = 328
Score = 33.9 bits (74), Expect = 0.100
Identities = 12/42 (28%), Positives = 23/42 (54%)
Frame = +1
Query: 349 HKSNQVLATGGDDKKVNLWAIGRQSCLMSLSGHTTPVECVCF 474
HK++ + T DD + L+ + +CL +++ V+ VCF
Sbjct: 39 HKTSTCMVTASDDDSIRLYDVASATCLKTINSKKYGVDLVCF 80
>At3g18060.1 68416.m02297 transducin family protein / WD-40 repeat
family protein similar to 66 kDa stress protein
(SP:P90587) [Physarum polycephalum (Slime mold)];
similar to WDR1 protein GB:AAD05042 [Gallus gallus]
(Genomics 56 (1), 59-69 (1999)); contains 11 WD-40
repeats (PF00400)
Length = 609
Score = 33.9 bits (74), Expect = 0.100
Identities = 18/67 (26%), Positives = 31/67 (46%)
Frame = +1
Query: 304 QFVAHKANVNCLAMGHKSNQVLATGGDDKKVNLWAIGRQSCLMSLSGHTTPVECVCFGHS 483
QF H NV+ LA+ + + +G D + W +GR C + ++C H
Sbjct: 319 QFSGHMKNVSSLAVLKGNADYILSGSYDGLICKWMLGRGFCGKLQRTQNSQIKCFA-AHE 377
Query: 484 EDLVCAG 504
E++V +G
Sbjct: 378 EEIVTSG 384
Score = 30.3 bits (65), Expect = 1.2
Identities = 25/86 (29%), Positives = 39/86 (45%), Gaps = 3/86 (3%)
Frame = +1
Query: 256 NNLLITMEATRRSWKLQ-FVAHKANVNCLAMGHKSNQVLATGGDDKKVNLWAIGR-QSCL 429
N + + R KL+ + H A +NCLA S V ATG D V ++ + + S
Sbjct: 512 NREAVVWDRVSREMKLKNMLYHSARINCLAWSPNSTMV-ATGSLDTCVIVYEVDKPASSR 570
Query: 430 MSLSG-HTTPVECVCFGHSEDLVCAG 504
M++ G H V + F +V +G
Sbjct: 571 MTIKGAHLGGVYGLGFADDSHVVSSG 596
>At2g46280.3 68415.m05757 eukaryotic translation initiation factor 3
subunit 2 / TGF-beta receptor interacting protein 1 /
eIF-3 beta / eIF3i / TRIP-1 (TIF3I1) identical to
eukaryotic translation initiation factor 3 subunit 2
(SP:Q38884) {Arabidopsis thaliana}; contains Pfam
PF00400: WD domain, G-beta repeat (5 copies)
Length = 254
Score = 33.9 bits (74), Expect = 0.100
Identities = 15/42 (35%), Positives = 20/42 (47%)
Frame = +3
Query: 525 IWDLEAAKLLRTFTGHXGAIKCMDFHPYGDYLTTGSCDSNVK 650
+W + + L T+ GH GA+ C D L TGS D K
Sbjct: 36 LWFADNGERLGTYRGHNGAVWCCDVSRDSSRLITGSADQTAK 77
>At2g46280.2 68415.m05756 eukaryotic translation initiation factor 3
subunit 2 / TGF-beta receptor interacting protein 1 /
eIF-3 beta / eIF3i / TRIP-1 (TIF3I1) identical to
eukaryotic translation initiation factor 3 subunit 2
(SP:Q38884) {Arabidopsis thaliana}; contains Pfam
PF00400: WD domain, G-beta repeat (5 copies)
Length = 328
Score = 33.9 bits (74), Expect = 0.100
Identities = 15/42 (35%), Positives = 20/42 (47%)
Frame = +3
Query: 525 IWDLEAAKLLRTFTGHXGAIKCMDFHPYGDYLTTGSCDSNVK 650
+W + + L T+ GH GA+ C D L TGS D K
Sbjct: 36 LWFADNGERLGTYRGHNGAVWCCDVSRDSSRLITGSADQTAK 77
>At2g46280.1 68415.m05755 eukaryotic translation initiation factor 3
subunit 2 / TGF-beta receptor interacting protein 1 /
eIF-3 beta / eIF3i / TRIP-1 (TIF3I1) identical to
eukaryotic translation initiation factor 3 subunit 2
(SP:Q38884) {Arabidopsis thaliana}; contains Pfam
PF00400: WD domain, G-beta repeat (5 copies)
Length = 328
Score = 33.9 bits (74), Expect = 0.100
Identities = 15/42 (35%), Positives = 20/42 (47%)
Frame = +3
Query: 525 IWDLEAAKLLRTFTGHXGAIKCMDFHPYGDYLTTGSCDSNVK 650
+W + + L T+ GH GA+ C D L TGS D K
Sbjct: 36 LWFADNGERLGTYRGHNGAVWCCDVSRDSSRLITGSADQTAK 77
>At1g64610.2 68414.m07324 WD-40 repeat family protein contains Pfam
PF00400: WD domain, G-beta repeat; similar to WD-repeat
protein 5 (WD repeat protein BIG-3) (SP: Q9UGP9) [Homo
sapiens]
Length = 647
Score = 33.9 bits (74), Expect = 0.100
Identities = 24/84 (28%), Positives = 36/84 (42%), Gaps = 1/84 (1%)
Frame = +1
Query: 304 QFVAHKANVNCLAMGHKSNQVLATGGDDKKVNLWAIGRQSCLMSLSGHTTPVECVCFGHS 483
+F H + L+ K L + D+ V LW +G CL + + H V CV F
Sbjct: 317 EFKGHIGEILDLSWSEKG--YLLSSSVDETVRLWRVGCDECLRTFT-HNNFVTCVAFNPV 373
Query: 484 ED-LVCAGSQLVP*KFGIWKLLNC 552
+D +GS + K IW + C
Sbjct: 374 DDNYFISGS--IDGKVRIWDVTRC 395
>At1g64610.1 68414.m07323 WD-40 repeat family protein contains Pfam
PF00400: WD domain, G-beta repeat; similar to WD-repeat
protein 5 (WD repeat protein BIG-3) (SP: Q9UGP9) [Homo
sapiens]
Length = 647
Score = 33.9 bits (74), Expect = 0.100
Identities = 24/84 (28%), Positives = 36/84 (42%), Gaps = 1/84 (1%)
Frame = +1
Query: 304 QFVAHKANVNCLAMGHKSNQVLATGGDDKKVNLWAIGRQSCLMSLSGHTTPVECVCFGHS 483
+F H + L+ K L + D+ V LW +G CL + + H V CV F
Sbjct: 317 EFKGHIGEILDLSWSEKG--YLLSSSVDETVRLWRVGCDECLRTFT-HNNFVTCVAFNPV 373
Query: 484 ED-LVCAGSQLVP*KFGIWKLLNC 552
+D +GS + K IW + C
Sbjct: 374 DDNYFISGS--IDGKVRIWDVTRC 395
>At1g24130.1 68414.m03044 transducin family protein / WD-40 repeat
family protein contains 7 WD-40 repeats
(PF00400);similar to beta transducin-like protein
HET-D2Y (GI:17225210) [Podospora anserina].
Length = 415
Score = 33.9 bits (74), Expect = 0.100
Identities = 19/62 (30%), Positives = 32/62 (51%), Gaps = 5/62 (8%)
Frame = +1
Query: 316 HKANVNCLAMGHKSNQVLATGGDDKKVNLWAIGRQ-----SCLMSLSGHTTPVECVCFGH 480
H+ + CLA+ ++ ++ +G DK + +W G SCL L GHT PV+ +
Sbjct: 327 HRKAIMCLAV---ASDLVLSGSADKSLRVWRRGLMEKEGYSCLAVLEGHTKPVKSLAVSV 383
Query: 481 SE 486
S+
Sbjct: 384 SD 385
>At5g54200.1 68418.m06748 WD-40 repeat family protein contains Pfam
PF00400: WD domain, G-beta repeat; similar to WD-repeat
protein 5 (WD repeat protein BIG-3) (SP: Q9UGP9) [Homo
sapiens]
Length = 825
Score = 33.5 bits (73), Expect = 0.13
Identities = 24/79 (30%), Positives = 35/79 (44%)
Frame = +1
Query: 307 FVAHKANVNCLAMGHKSNQVLATGGDDKKVNLWAIGRQSCLMSLSGHTTPVECVCFGHSE 486
FV H +V L + +Q L + DK V LW + ++CL S H+ V C+ F +
Sbjct: 464 FVGHLDDV--LDLSWSKSQHLLSSSMDKTVRLWDLSSKTCLKVFS-HSDYVTCIQFNPVD 520
Query: 487 DLVCAGSQLVP*KFGIWKL 543
D L K IW +
Sbjct: 521 DNYFISGSLDA-KVRIWSI 538
>At4g00090.1 68417.m00009 transducin family protein / WD-40 repeat
family protein similar to Transducin beta-like 2 protein
(WS beta-transducin repeats protein) (WS-betaTRP)
(Williams-Beuren syndrome chromosome region 13 protein)
(SP:Q9Y4P3) {Homo sapiens}
Length = 430
Score = 33.5 bits (73), Expect = 0.13
Identities = 16/46 (34%), Positives = 24/46 (52%), Gaps = 7/46 (15%)
Frame = +1
Query: 313 AHKANVNCLA-------MGHKSNQVLATGGDDKKVNLWAIGRQSCL 429
AH+ ++ C++ +G + VL T GDDKKV LW + L
Sbjct: 385 AHEGDITCISWAPKAITVGERHAMVLGTSGDDKKVKLWEAPKSQSL 430
>At5g60940.2 68418.m07645 transducin family protein / WD-40 repeat
family protein contains 6 WD-40 repeats (PF00400);
similar to cleavage stimulation factor 50K chain Homo
sapiens, PIR:A45142
Length = 337
Score = 33.1 bits (72), Expect = 0.17
Identities = 15/40 (37%), Positives = 22/40 (55%)
Frame = +3
Query: 531 DLEAAKLLRTFTGHXGAIKCMDFHPYGDYLTTGSCDSNVK 650
D +A L+RTF H I +DFHP L + + D+ +K
Sbjct: 70 DTQARPLIRTFYDHAEPINDLDFHPRSTILISSAKDNCIK 109
Score = 30.7 bits (66), Expect = 0.93
Identities = 10/32 (31%), Positives = 18/32 (56%)
Frame = +3
Query: 555 RTFTGHXGAIKCMDFHPYGDYLTTGSCDSNVK 650
+T + H ++C F P G + TG D+++K
Sbjct: 25 KTLSEHKSVVRCARFSPDGMFFATGGADTSIK 56
>At5g60940.1 68418.m07644 transducin family protein / WD-40 repeat
family protein contains 6 WD-40 repeats (PF00400);
similar to cleavage stimulation factor 50K chain Homo
sapiens, PIR:A45142
Length = 429
Score = 33.1 bits (72), Expect = 0.17
Identities = 15/40 (37%), Positives = 22/40 (55%)
Frame = +3
Query: 531 DLEAAKLLRTFTGHXGAIKCMDFHPYGDYLTTGSCDSNVK 650
D +A L+RTF H I +DFHP L + + D+ +K
Sbjct: 162 DTQARPLIRTFYDHAEPINDLDFHPRSTILISSAKDNCIK 201
Score = 30.7 bits (66), Expect = 0.93
Identities = 10/32 (31%), Positives = 18/32 (56%)
Frame = +3
Query: 555 RTFTGHXGAIKCMDFHPYGDYLTTGSCDSNVK 650
+T + H ++C F P G + TG D+++K
Sbjct: 117 KTLSEHKSVVRCARFSPDGMFFATGGADTSIK 148
>At5g50230.1 68418.m06221 transducin family protein / WD-40 repeat
family protein contains 7 WD-40 repeats (PF00400);
similar to TIPD PROTEIN (SP:O15736)[Dictyostelium
discoideum]
Length = 515
Score = 33.1 bits (72), Expect = 0.17
Identities = 13/43 (30%), Positives = 22/43 (51%)
Frame = +3
Query: 513 GALKIWDLEAAKLLRTFTGHXGAIKCMDFHPYGDYLTTGSCDS 641
G L++WD++ KLL GH A+ + G+ + T D+
Sbjct: 379 GNLRLWDIQTGKLLSEVAGHSSAVTSVSLSRNGNRILTSGRDN 421
Score = 27.5 bits (58), Expect = 8.7
Identities = 16/65 (24%), Positives = 26/65 (40%)
Frame = +1
Query: 313 AHKANVNCLAMGHKSNQVLATGGDDKKVNLWAIGRQSCLMSLSGHTTPVECVCFGHSEDL 492
AH+ + + S L TGG D+ V +W + + SL G + + H
Sbjct: 229 AHEGGCGSIVFEYNSG-TLFTGGQDRAVKMWDTNSGTLIKSLYGSLGNILDMAVTHDNKS 287
Query: 493 VCAGS 507
V A +
Sbjct: 288 VIAAT 292
>At2g26490.1 68415.m03178 transducin family protein / WD-40 repeat
family protein contains 7 WD-40 repeats (PF00400);
related to En/Spm transposon family of maize
Length = 465
Score = 33.1 bits (72), Expect = 0.17
Identities = 18/67 (26%), Positives = 33/67 (49%)
Frame = +1
Query: 307 FVAHKANVNCLAMGHKSNQVLATGGDDKKVNLWAIGRQSCLMSLSGHTTPVECVCFGHSE 486
++ H V+CL++ + +L + D+ + +W I CL S+ H V V +E
Sbjct: 202 WIKHADAVSCLSLNDEQG-LLYSASWDRTIKVWRIADSKCLESIPAHDDAVNSV-VSTTE 259
Query: 487 DLVCAGS 507
+V +GS
Sbjct: 260 AIVFSGS 266
Score = 33.1 bits (72), Expect = 0.17
Identities = 18/53 (33%), Positives = 29/53 (54%), Gaps = 2/53 (3%)
Frame = +1
Query: 316 HKANVNCLAMGHKSNQVLATGGDDKKVNLWAIGRQ--SCLMSLSGHTTPVECV 468
HK V CL + + ++ +G DK + +W +CL L+GHT PV+C+
Sbjct: 337 HKLAVLCLEV---AGSLVFSGSADKTICVWKRDGNIHTCLSVLTGHTGPVKCL 386
>At1g48630.1 68414.m05440 guanine nucleotide-binding family protein
/ activated protein kinase C receptor, putative / RACK,
putative contains 7 WD-40 repeats (PF00400); very
similar to guanine nucleotide-binding protein; activated
protein kinase C receptor; RACK1 (GI:9294068)
{Arabidopsis thaliana}; similar to WD-40 repeat
auxin-dependent protein ARCA (SP:O24456) [Arabidopsis
thaliana];
Length = 326
Score = 33.1 bits (72), Expect = 0.17
Identities = 16/50 (32%), Positives = 24/50 (48%)
Frame = +3
Query: 489 LSMCWFTTGALKIWDLEAAKLLRTFTGHXGAIKCMDFHPYGDYLTTGSCD 638
+S W T +K+W+L+ KL T GH G + + P G +G D
Sbjct: 167 VSASWDKT--VKVWNLQNCKLRNTLAGHSGYLNTVAVSPDGSLCASGGKD 214
Score = 30.3 bits (65), Expect = 1.2
Identities = 16/54 (29%), Positives = 24/54 (44%)
Frame = +3
Query: 489 LSMCWFTTGALKIWDLEAAKLLRTFTGHXGAIKCMDFHPYGDYLTTGSCDSNVK 650
LS W G L++WDL + R F GH + + F + + S D +K
Sbjct: 79 LSGSW--DGELRLWDLATGESTRRFVGHTKDVLSVAFSTDNRQIVSASRDRTIK 130
>At1g24530.1 68414.m03088 transducin family protein / WD-40 repeat
family protein similar to Vegetatible incompatibility
protein HET-E-1 (SP:Q00808) {Podospora anserina};
contains 7 WD-40 repeats (PF00400)
Length = 418
Score = 33.1 bits (72), Expect = 0.17
Identities = 17/48 (35%), Positives = 26/48 (54%), Gaps = 3/48 (6%)
Frame = +1
Query: 358 NQVLATGGDDKKVNLWAIGRQS---CLMSLSGHTTPVECVCFGHSEDL 492
+ +L +G D+ V +W G S CL LSGHT PV+ + ++L
Sbjct: 336 SDLLLSGSADRTVRIWRRGPDSSYSCLEVLSGHTKPVKSLAAVREKEL 383
>At1g04510.1 68414.m00442 transducin family protein / WD-40 repeat
family protein contains 6 WD-40 repeats (PF00400);
similar to cell cycle control protein cwf8 (SP:O14011)
[Schizosaccharomyces pombe (Fission yeast)]
Length = 523
Score = 33.1 bits (72), Expect = 0.17
Identities = 14/40 (35%), Positives = 22/40 (55%)
Frame = +3
Query: 519 LKIWDLEAAKLLRTFTGHXGAIKCMDFHPYGDYLTTGSCD 638
+KIWD+++ + F GH G I + F G +L T + D
Sbjct: 378 VKIWDVKSQANVAKFGGHNGEITSISFSENGYFLATAALD 417
Score = 29.9 bits (64), Expect = 1.6
Identities = 18/51 (35%), Positives = 24/51 (47%)
Frame = +1
Query: 355 SNQVLATGGDDKKVNLWAIGRQSCLMSLSGHTTPVECVCFGHSEDLVCAGS 507
S V+ATGG D L+ L +L+GH+ V + F DLV S
Sbjct: 233 SKDVIATGGIDTTAVLFDRPSGQILSTLTGHSKKVTSIKFVGDTDLVLTAS 283
>At5g40880.1 68418.m04964 WD-40 repeat family protein / zfwd3
protein (ZFWD3) contains 5 WD-40 repeats (PF00400);
contains Zinc finger C-x8-C-x5-C-x3-H type domain
(PF00642); identical to zfwd3 protein (GP:12057168)
{Arabidopsis thaliana}
Length = 472
Score = 32.7 bits (71), Expect = 0.23
Identities = 16/54 (29%), Positives = 25/54 (46%), Gaps = 1/54 (1%)
Frame = +1
Query: 316 HKANVNCLAMGHKSNQVLATGGDDKKVNLWAIGRQSCLMSLSGHT-TPVECVCF 474
H V C +G +VL +G DK + +W + C M+L H T +C+
Sbjct: 311 HSGEVTCFVVG---GEVLYSGSVDKTIKVWDLNTLQCRMTLKQHIGTVTSLLCW 361
>At5g24320.2 68418.m02866 WD-40 repeat family protein contains Pfam
PF00400: WD domain, G-beta repeat; similar to WD-repeat
protein 5 (WD repeat protein BIG-3) (SP: Q9UGP9) [Homo
sapiens]
Length = 698
Score = 32.7 bits (71), Expect = 0.23
Identities = 24/84 (28%), Positives = 35/84 (41%), Gaps = 1/84 (1%)
Frame = +1
Query: 304 QFVAHKANVNCLAMGHKSNQVLATGGDDKKVNLWAIGRQSCLMSLSGHTTPVECVCFGH- 480
+F+ H ++ L + N L + D V LW IG + CL + H V V F
Sbjct: 351 EFLGHSGDI--LDISWSKNNRLLSASVDNSVRLWQIGCEDCL-GIFSHNNYVTSVQFNPV 407
Query: 481 SEDLVCAGSQLVP*KFGIWKLLNC 552
+D +GS + K IW C
Sbjct: 408 DDDHFISGS--IDGKVRIWSASQC 429
>At5g24320.1 68418.m02865 WD-40 repeat family protein contains Pfam
PF00400: WD domain, G-beta repeat; similar to WD-repeat
protein 5 (WD repeat protein BIG-3) (SP: Q9UGP9) [Homo
sapiens]
Length = 694
Score = 32.7 bits (71), Expect = 0.23
Identities = 24/84 (28%), Positives = 35/84 (41%), Gaps = 1/84 (1%)
Frame = +1
Query: 304 QFVAHKANVNCLAMGHKSNQVLATGGDDKKVNLWAIGRQSCLMSLSGHTTPVECVCFGH- 480
+F+ H ++ L + N L + D V LW IG + CL + H V V F
Sbjct: 351 EFLGHSGDI--LDISWSKNNRLLSASVDNSVRLWQIGCEDCL-GIFSHNNYVTSVQFNPV 407
Query: 481 SEDLVCAGSQLVP*KFGIWKLLNC 552
+D +GS + K IW C
Sbjct: 408 DDDHFISGS--IDGKVRIWSASQC 429
>At4g03020.1 68417.m00410 transducin family protein / WD-40 repeat
family protein contains 6 WD-40 repeats (PF00400);
similar to L. erythrorhizon LEC14B, GenBank accession
number Q40153
Length = 493
Score = 32.7 bits (71), Expect = 0.23
Identities = 21/62 (33%), Positives = 31/62 (50%), Gaps = 4/62 (6%)
Frame = +1
Query: 274 MEATRRSWKLQFVAHKANVNCLAMGHKSNQVLATGGDDKKVNLW----AIGRQSCLMSLS 441
+EA R S L+ VAH ++VN + +S ++ +G DD +W IGR L
Sbjct: 258 LEANRVS--LRTVAHTSDVNTVCFADESGNLILSGSDDNLCKVWDRRCFIGRDKPAGVLV 315
Query: 442 GH 447
GH
Sbjct: 316 GH 317
>At3g15470.1 68416.m01962 WD-40 repeat family protein contains Pfam
PF00400: WD domain, G-beta repeat; similar to WD-repeat
protein 5 (WD repeat protein BIG-3) (SP: Q9UGP9) [Homo
sapiens]
Length = 883
Score = 32.7 bits (71), Expect = 0.23
Identities = 20/69 (28%), Positives = 30/69 (43%)
Frame = +1
Query: 337 LAMGHKSNQVLATGGDDKKVNLWAIGRQSCLMSLSGHTTPVECVCFGHSEDLVCAGSQLV 516
L + +Q L + DK V LW + Q+CL S H+ V C+ F +D L
Sbjct: 517 LDLAWSKSQHLLSSSMDKTVRLWNLSSQTCLKVFS-HSDYVTCIQFNPVDDRYFISGSLD 575
Query: 517 P*KFGIWKL 543
K +W +
Sbjct: 576 A-KVRVWSI 583
Score = 27.5 bits (58), Expect = 8.7
Identities = 16/67 (23%), Positives = 31/67 (46%), Gaps = 6/67 (8%)
Frame = +1
Query: 229 LEILFMEFSNNLLITMEATRRSWKL------QFVAHKANVNCLAMGHKSNQVLATGGDDK 390
L++ + + + L +M+ T R W L + +H V C+ ++ +G D
Sbjct: 517 LDLAWSKSQHLLSSSMDKTVRLWNLSSQTCLKVFSHSDYVTCIQFNPVDDRYFISGSLDA 576
Query: 391 KVNLWAI 411
KV +W+I
Sbjct: 577 KVRVWSI 583
>At1g18080.1 68414.m02238 WD-40 repeat family protein /
auxin-dependent protein (ARCA) / guanine
nucleotide-binding protein beta subunit, putative
identical to SP|O24456 Guanine nucleotide-binding
protein beta subunit-like protein (WD-40 repeat
auxin-dependent protein ARCA) {Arabidopsis thaliana};
contains 7 WD-40 repeats (PF00400)
Length = 327
Score = 32.7 bits (71), Expect = 0.23
Identities = 17/53 (32%), Positives = 24/53 (45%)
Frame = +3
Query: 489 LSMCWFTTGALKIWDLEAAKLLRTFTGHXGAIKCMDFHPYGDYLTTGSCDSNV 647
+S W T +K+W+L KL T GH G + + P G +G D V
Sbjct: 168 VSASWDKT--VKVWNLSNCKLRSTLAGHTGYVSTVAVSPDGSLCASGGKDGVV 218
Score = 29.9 bits (64), Expect = 1.6
Identities = 17/54 (31%), Positives = 24/54 (44%)
Frame = +3
Query: 489 LSMCWFTTGALKIWDLEAAKLLRTFTGHXGAIKCMDFHPYGDYLTTGSCDSNVK 650
LS W G L++WDL A R F GH + + F + + S D +K
Sbjct: 79 LSGSW--DGELRLWDLAAGVSTRRFVGHTKDVLSVAFSLDNRQIVSASRDRTIK 130
Score = 29.9 bits (64), Expect = 1.6
Identities = 17/65 (26%), Positives = 31/65 (47%)
Frame = +1
Query: 316 HKANVNCLAMGHKSNQVLATGGDDKKVNLWAIGRQSCLMSLSGHTTPVECVCFGHSEDLV 495
H V+ +A+ + A+GG D V LW + L SL ++ + +CF + +
Sbjct: 193 HTGYVSTVAVS-PDGSLCASGGKDGVVLLWDLAEGKKLYSLEANSV-IHALCFSPNRYWL 250
Query: 496 CAGSQ 510
CA ++
Sbjct: 251 CAATE 255
Score = 27.9 bits (59), Expect = 6.6
Identities = 16/66 (24%), Positives = 28/66 (42%), Gaps = 1/66 (1%)
Frame = +1
Query: 316 HKANVNCLAMGHKSNQ-VLATGGDDKKVNLWAIGRQSCLMSLSGHTTPVECVCFGHSEDL 492
H+ V+C+ + Q + + DK V +W + +L+GHT V V L
Sbjct: 149 HRDWVSCVRFSPNTLQPTIVSASWDKTVKVWNLSNCKLRSTLAGHTGYVSTVAVSPDGSL 208
Query: 493 VCAGSQ 510
+G +
Sbjct: 209 CASGGK 214
>At5g53500.1 68418.m06649 WD-40 repeat family protein contains Pfam
PF00400: WD domain, G-beta repeat; similar to WD-repeat
protein 5 (WD repeat protein BIG-3) (SP: Q9UGP9) [Homo
sapiens]
Length = 654
Score = 32.3 bits (70), Expect = 0.30
Identities = 24/84 (28%), Positives = 36/84 (42%), Gaps = 1/84 (1%)
Frame = +1
Query: 304 QFVAHKANVNCLAMGHKSNQVLATGGDDKKVNLWAIGRQSCLMSLSGHTTPVECVCFGH- 480
+F H V L + + L + DK V LW +G CL + H + V V F
Sbjct: 323 EFRGHTGEV--LDISWSKDNYLLSASMDKTVRLWKVGSNDCL-GVFAHNSYVTSVQFNPV 379
Query: 481 SEDLVCAGSQLVP*KFGIWKLLNC 552
+E+ +GS + K IW + C
Sbjct: 380 NENYFMSGS--IDGKVRIWNISGC 401
>At4g29830.1 68417.m04246 transducin family protein / WD-40 repeat
family protein contains 7 WD-40 repeats (PF00400); G
protein beta subunit-like protein, Schistosoma mansoni,
gb:U30261
Length = 321
Score = 32.3 bits (70), Expect = 0.30
Identities = 15/44 (34%), Positives = 23/44 (52%)
Frame = +3
Query: 519 LKIWDLEAAKLLRTFTGHXGAIKCMDFHPYGDYLTTGSCDSNVK 650
+K+W + L+RT TGH + + HP G + S DS V+
Sbjct: 42 VKLWRPDELDLVRTNTGHSLGVAALAAHPSGIIAASSSIDSFVR 85
Score = 31.9 bits (69), Expect = 0.40
Identities = 21/68 (30%), Positives = 29/68 (42%)
Frame = +1
Query: 304 QFVAHKANVNCLAMGHKSNQVLATGGDDKKVNLWAIGRQSCLMSLSGHTTPVECVCFGHS 483
Q H V L +VL +G DD VN+ ++ L S+SGHT+ V V
Sbjct: 195 QLEGHNMPVRSLVFSPVDPRVLFSGSDDGHVNMHDAEGKTLLGSMSGHTSWVLSVDASPD 254
Query: 484 EDLVCAGS 507
+ GS
Sbjct: 255 GGAIATGS 262
Score = 31.5 bits (68), Expect = 0.53
Identities = 15/46 (32%), Positives = 23/46 (50%)
Frame = +3
Query: 513 GALKIWDLEAAKLLRTFTGHXGAIKCMDFHPYGDYLTTGSCDSNVK 650
G + + D E LL + +GH + +D P G + TGS D V+
Sbjct: 223 GHVNMHDAEGKTLLGSMSGHTSWVLSVDASPDGGAIATGSSDRTVR 268
Score = 31.1 bits (67), Expect = 0.70
Identities = 12/36 (33%), Positives = 20/36 (55%)
Frame = +1
Query: 367 LATGGDDKKVNLWAIGRQSCLMSLSGHTTPVECVCF 474
+ATG D+ V LW + ++ + ++S H V V F
Sbjct: 258 IATGSSDRTVRLWDLKMRAAIQTMSNHNDQVWSVAF 293
Score = 30.3 bits (65), Expect = 1.2
Identities = 20/65 (30%), Positives = 34/65 (52%), Gaps = 3/65 (4%)
Frame = +3
Query: 462 MCVFWS--FRRLSMCWFTTGALKIWDLEAAKLLRTFTGHXGAIKCMDFHPYGD-YLTTGS 632
+ V WS +RL+ C G + ++D++ +KLL GH ++ + F P L +GS
Sbjct: 162 LSVAWSPNGKRLA-CGSMDGTICVFDVDRSKLLHQLEGHNMPVRSLVFSPVDPRVLFSGS 220
Query: 633 CDSNV 647
D +V
Sbjct: 221 DDGHV 225
>At4g22910.1 68417.m03309 WD-40 repeat family protein contains 6
WD-40 repeats (PF00400); similar to fizzy-related
protein (GI:5813825) Drosophila melanogaster,
PID:g2326419;
Length = 518
Score = 32.3 bits (70), Expect = 0.30
Identities = 18/68 (26%), Positives = 34/68 (50%), Gaps = 1/68 (1%)
Frame = +1
Query: 304 QFVAHKANVNCLAMGHKSNQVLATGGDDKKVNLWAIGRQSCLMSLSGHTTPVECVCFG-H 480
+ HK+ V L + N+ LA+GG+D ++ +W ++ S HT V+ + + H
Sbjct: 330 KLAGHKSEVCGLKWSY-DNRELASGGNDNRLFVWNQHSTQPVLKYSEHTAAVKAIAWSPH 388
Query: 481 SEDLVCAG 504
L+ +G
Sbjct: 389 VHGLLASG 396
Score = 29.5 bits (63), Expect = 2.1
Identities = 18/61 (29%), Positives = 29/61 (47%), Gaps = 1/61 (1%)
Frame = +3
Query: 468 VFWSFRRLSMCWFT-TGALKIWDLEAAKLLRTFTGHXGAIKCMDFHPYGDYLTTGSCDSN 644
V W+ R + T TG ++IWD K RT GH + + + L++GS D +
Sbjct: 258 VGWALRGTHLAVGTSTGKVQIWDASRCKRTRTMEGHRLRVGALAWG--SSVLSSGSRDKS 315
Query: 645 V 647
+
Sbjct: 316 I 316
>At4g11110.1 68417.m01803 WD-40 repeat family protein / phytochrome
A-related contains 7 WD-40 repeats (PF00400); similar to
phytochrome A supressor spa1 (GI:4809171) [Arabidopsis
thaliana]; contains non-consensus (GC) donor splice
sites at introns 4 and 6
Length = 1017
Score = 32.3 bits (70), Expect = 0.30
Identities = 21/68 (30%), Positives = 31/68 (45%), Gaps = 1/68 (1%)
Frame = +1
Query: 307 FVAHKANVNCLAMGHKSNQVLATGGDDKKVNLWAIGRQSCLMSLSGHTTPVECVCFG-HS 483
F+ H+ + LA+G DD V LW I ++CL ++ + V CV F S
Sbjct: 792 FIEHEKRAWSVDFSEACPTKLASGSDDCSVKLWNINERNCLGTIR-NIANVCCVQFSPQS 850
Query: 484 EDLVCAGS 507
L+ GS
Sbjct: 851 SHLLAFGS 858
>At3g18140.1 68416.m02306 transducin family protein / WD-40 repeat
family protein contains 6 WD-40 repeats (PF00400);
similar to Pop3 (GP:3434986) [Schizosaccharomyces pombe]
Length = 305
Score = 32.3 bits (70), Expect = 0.30
Identities = 26/74 (35%), Positives = 35/74 (47%), Gaps = 2/74 (2%)
Frame = +1
Query: 298 KLQFVAHKANV-NCLAMGHKSNQVLATGGDDKKVNLWAIGRQSCLMSLSGHTTPV-ECVC 471
KLQ AH ++ CL +N+ LAT DK V +W + L+GH V +CV
Sbjct: 206 KLQ--AHNGHILKCLLS--PANKYLATASSDKTVKIWNVDGFKLEKVLTGHQRWVWDCVF 261
Query: 472 FGHSEDLVCAGSQL 513
E LV A S +
Sbjct: 262 SVDGEFLVTASSDM 275
Score = 31.1 bits (67), Expect = 0.70
Identities = 14/44 (31%), Positives = 23/44 (52%)
Frame = +3
Query: 519 LKIWDLEAAKLLRTFTGHXGAIKCMDFHPYGDYLTTGSCDSNVK 650
+KIW+++ KL + TGH + F G++L T S D +
Sbjct: 235 VKIWNVDGFKLEKVLTGHQRWVWDCVFSVDGEFLVTASSDMTAR 278
>At2g33340.2 68415.m04087 transducin family protein / WD-40 repeat
family protein contains 5 WD-40 repeats (PF00400);
similar to cell cycle control protein cwf8 (SP:O14011)
[Schizosaccharomyces pombe (Fission yeast)]
Length = 537
Score = 32.3 bits (70), Expect = 0.30
Identities = 13/40 (32%), Positives = 22/40 (55%)
Frame = +3
Query: 519 LKIWDLEAAKLLRTFTGHXGAIKCMDFHPYGDYLTTGSCD 638
+KIWD+++ + F GH G + + F G +L T + D
Sbjct: 377 VKIWDVKSQANVAKFDGHTGEVTAISFSENGYFLATAAED 416
Score = 30.7 bits (66), Expect = 0.93
Identities = 19/51 (37%), Positives = 24/51 (47%)
Frame = +1
Query: 355 SNQVLATGGDDKKVNLWAIGRQSCLMSLSGHTTPVECVCFGHSEDLVCAGS 507
S V+ATGG D L+ L +L+GH+ V V F DLV S
Sbjct: 233 SKDVIATGGVDATAVLFDRPSGQILSTLTGHSKKVTSVKFVGDSDLVLTAS 283
Score = 30.3 bits (65), Expect = 1.2
Identities = 12/45 (26%), Positives = 19/45 (42%)
Frame = +1
Query: 349 HKSNQVLATGGDDKKVNLWAIGRQSCLMSLSGHTTPVECVCFGHS 483
H +L TG V +W + Q+ + GHT V + F +
Sbjct: 362 HPDGLILGTGTSQSVVKIWDVKSQANVAKFDGHTGEVTAISFSEN 406
>At2g33340.1 68415.m04086 transducin family protein / WD-40 repeat
family protein contains 5 WD-40 repeats (PF00400);
similar to cell cycle control protein cwf8 (SP:O14011)
[Schizosaccharomyces pombe (Fission yeast)]
Length = 565
Score = 32.3 bits (70), Expect = 0.30
Identities = 13/40 (32%), Positives = 22/40 (55%)
Frame = +3
Query: 519 LKIWDLEAAKLLRTFTGHXGAIKCMDFHPYGDYLTTGSCD 638
+KIWD+++ + F GH G + + F G +L T + D
Sbjct: 377 VKIWDVKSQANVAKFDGHTGEVTAISFSENGYFLATAAED 416
Score = 30.7 bits (66), Expect = 0.93
Identities = 19/51 (37%), Positives = 24/51 (47%)
Frame = +1
Query: 355 SNQVLATGGDDKKVNLWAIGRQSCLMSLSGHTTPVECVCFGHSEDLVCAGS 507
S V+ATGG D L+ L +L+GH+ V V F DLV S
Sbjct: 233 SKDVIATGGVDATAVLFDRPSGQILSTLTGHSKKVTSVKFVGDSDLVLTAS 283
Score = 30.3 bits (65), Expect = 1.2
Identities = 12/45 (26%), Positives = 19/45 (42%)
Frame = +1
Query: 349 HKSNQVLATGGDDKKVNLWAIGRQSCLMSLSGHTTPVECVCFGHS 483
H +L TG V +W + Q+ + GHT V + F +
Sbjct: 362 HPDGLILGTGTSQSVVKIWDVKSQANVAKFDGHTGEVTAISFSEN 406
>At5g27570.1 68418.m03302 WD-40 repeat family protein contains 5
WD-40 repeats (PF00400); similar to fizzy1 (GI:3298595)
{Xenopus laevis}; similar to "Will die slowly" protein,
Drosophia; putative cdc20 protein - Arabidopsis
thaliana, EMBL:AF029262
Length = 411
Score = 31.9 bits (69), Expect = 0.40
Identities = 19/52 (36%), Positives = 24/52 (46%), Gaps = 2/52 (3%)
Frame = +1
Query: 289 RSWKLQFVAHKANVNCLAMGHKSNQVLATGG--DDKKVNLWAIGRQSCLMSL 438
R W +F H A V LA +LATGG D K+ W +CL S+
Sbjct: 257 RQWLHRFEEHTAAVRALAWCPFQASLLATGGGVGDGKIKFWNTHTGACLNSV 308
>At5g26900.1 68418.m03208 WD-40 repeat family protein contains 5
WD-40 repeats (PF00400); similar to fizzy1 (GI:3298595)
{Xenopus laevis}; WD-repeat protein, carrot, PIR:T14352
Length = 444
Score = 31.9 bits (69), Expect = 0.40
Identities = 19/52 (36%), Positives = 24/52 (46%), Gaps = 2/52 (3%)
Frame = +1
Query: 289 RSWKLQFVAHKANVNCLAMGHKSNQVLATGG--DDKKVNLWAIGRQSCLMSL 438
R W +F H A V LA +LATGG D K+ W +CL S+
Sbjct: 290 RQWLHRFEEHTAAVRALAWCPFQASLLATGGGVGDGKIKFWNTHTGACLNSV 341
>At4g28450.1 68417.m04071 transducin family protein / WD-40 repeat
family protein SOF1 (involved in rRNA processing)
protein-yeast
Length = 442
Score = 31.9 bits (69), Expect = 0.40
Identities = 12/46 (26%), Positives = 25/46 (54%)
Frame = +3
Query: 513 GALKIWDLEAAKLLRTFTGHXGAIKCMDFHPYGDYLTTGSCDSNVK 650
G +++WD+ + + + F GH GA++ + G+ L + D V+
Sbjct: 79 GDIRLWDISSRRTVCQFPGHQGAVRGLTASTDGNVLVSCGTDCTVR 124
>At1g04140.2 68414.m00404 transducin family protein / WD-40 repeat
family protein contains 4 WD-40 repeats (PF00400);
similar to neural cell adhesion molecule 2, large
isoform precursor gb|M76710 from Xenopus laevis, and
beta transducin from S. cerevisiae gb|Q05946. ESTs
gb|N65081 gb|Z30910, gb|Z34190, gb|Z34611, gb|R30101,
gb|H36304, and gb|N65606 come from
Length = 793
Score = 31.9 bits (69), Expect = 0.40
Identities = 16/45 (35%), Positives = 24/45 (53%), Gaps = 1/45 (2%)
Frame = +3
Query: 519 LKIWDLEAAKLLRTFTGHXGAIKCMDFHP-YGDYLTTGSCDSNVK 650
+KI D E K L+ TGH + FHP + + + +GS D V+
Sbjct: 127 VKIIDCETGKCLKILTGHRRTPWVVRFHPRHSEIVASGSLDHEVR 171
>At1g04140.1 68414.m00403 transducin family protein / WD-40 repeat
family protein contains 4 WD-40 repeats (PF00400);
similar to neural cell adhesion molecule 2, large
isoform precursor gb|M76710 from Xenopus laevis, and
beta transducin from S. cerevisiae gb|Q05946. ESTs
gb|N65081 gb|Z30910, gb|Z34190, gb|Z34611, gb|R30101,
gb|H36304, and gb|N65606 come from
Length = 790
Score = 31.9 bits (69), Expect = 0.40
Identities = 16/45 (35%), Positives = 24/45 (53%), Gaps = 1/45 (2%)
Frame = +3
Query: 519 LKIWDLEAAKLLRTFTGHXGAIKCMDFHP-YGDYLTTGSCDSNVK 650
+KI D E K L+ TGH + FHP + + + +GS D V+
Sbjct: 127 VKIIDCETGKCLKILTGHRRTPWVVRFHPRHSEIVASGSLDHEVR 171
>At5g27080.1 68418.m03231 WD-40 repeat family protein contains 5
WD-40 repeats (PF00400); similar to fizzy1 (GI:3298595)
{Xenopus laevis};
Length = 466
Score = 31.5 bits (68), Expect = 0.53
Identities = 19/52 (36%), Positives = 24/52 (46%), Gaps = 2/52 (3%)
Frame = +1
Query: 289 RSWKLQFVAHKANVNCLAMGHKSNQVLATGG--DDKKVNLWAIGRQSCLMSL 438
R W +F H A V LA +LATGG D K+ W +CL S+
Sbjct: 288 RQWLHRFEEHTAAVRALAWCPFQATLLATGGGVGDGKIKFWNTHTGACLNSV 339
>At5g11240.1 68418.m01313 transducin family protein / WD-40 repeat
family protein contains 3 WD-40 repeats (PF00400);
similar to uncharacterized protein KIAA0007 (GI:1663708)
{Homo sapiens} 1.2e-11
Length = 615
Score = 31.5 bits (68), Expect = 0.53
Identities = 12/38 (31%), Positives = 22/38 (57%)
Frame = +3
Query: 519 LKIWDLEAAKLLRTFTGHXGAIKCMDFHPYGDYLTTGS 632
LK ++ K ++ FTGH G ++C+ F G Y+ + +
Sbjct: 180 LKTFNCSDLKKIQKFTGHPGVVRCVAFTEDGKYVLSSA 217
>At3g18130.1 68416.m02305 guanine nucleotide-binding family protein
/ activated protein kinase C receptor (RACK1) identical
to guanine nucleotide-binding protein; activated protein
kinase C receptor; RACK1 (GI:9294068) {Arabidopsis
thaliana}; contains Pfam profile: PF00400 WD domain,
G-beta repeat (7 copies)
Length = 326
Score = 31.5 bits (68), Expect = 0.53
Identities = 15/50 (30%), Positives = 24/50 (48%)
Frame = +3
Query: 489 LSMCWFTTGALKIWDLEAAKLLRTFTGHXGAIKCMDFHPYGDYLTTGSCD 638
+S W T +K+W+L+ KL + GH G + + P G +G D
Sbjct: 167 VSASWDKT--VKVWNLQNCKLRNSLVGHSGYLNTVAVSPDGSLCASGGKD 214
Score = 30.7 bits (66), Expect = 0.93
Identities = 16/54 (29%), Positives = 24/54 (44%)
Frame = +3
Query: 489 LSMCWFTTGALKIWDLEAAKLLRTFTGHXGAIKCMDFHPYGDYLTTGSCDSNVK 650
LS W G L++WDL + R F GH + + F + + S D +K
Sbjct: 79 LSGSW--DGELRLWDLATGETTRRFVGHTKDVLSVAFSTDNRQIVSASRDRTIK 130
>At3g15610.1 68416.m01980 transducin family protein / WD-40 repeat
family protein contains 7 WD-40 repeats (PF00400);
similar to serine/threonine kinase receptor associated
protein GB:NP_035629 (SP:Q9Z1Z2) [Mus musculus];
UNR-interacting protein GB:NP_009109 [Homo sapiens]
Length = 341
Score = 31.5 bits (68), Expect = 0.53
Identities = 17/62 (27%), Positives = 27/62 (43%)
Frame = +1
Query: 325 NVNCLAMGHKSNQVLATGGDDKKVNLWAIGRQSCLMSLSGHTTPVECVCFGHSEDLVCAG 504
N+ ++ KS GG+D V L+ + GH PV CV F + + +G
Sbjct: 229 NIESASLEPKSGNKFVAGGEDMWVRLFDFHTGKEIGCNKGHHGPVHCVRFAPTGESYASG 288
Query: 505 SQ 510
S+
Sbjct: 289 SE 290
>At3g04470.1 68416.m00474 expressed protein
Length = 423
Score = 31.5 bits (68), Expect = 0.53
Identities = 9/20 (45%), Positives = 17/20 (85%)
Frame = +3
Query: 372 NWRR*QKSKFMGNWKTKLFN 431
NWRR ++++ +GNWK K+++
Sbjct: 63 NWRRQERTEMVGNWKAKVYD 82
>At5g23730.1 68418.m02782 transducin family protein / WD-40 repeat
family protein contains similarity to photomorphogenesis
repressor protein; contains Pfam PF00400: WD domain,
G-beta repeat (5 copies)
Length = 243
Score = 31.1 bits (67), Expect = 0.70
Identities = 10/22 (45%), Positives = 16/22 (72%)
Frame = +3
Query: 507 TTGALKIWDLEAAKLLRTFTGH 572
T G LK+W +E +++RT+ GH
Sbjct: 132 TDGCLKLWSVEDGRVIRTYEGH 153
>At3g50390.1 68416.m05512 transducin family protein / WD-40 repeat
family protein contains 7 WD-40 repeats (PF00400);
similar to myosin heavy chain kinase B (gb:U90946)
[Dictyostelium discoideum]
Length = 469
Score = 31.1 bits (67), Expect = 0.70
Identities = 18/64 (28%), Positives = 29/64 (45%), Gaps = 4/64 (6%)
Frame = +1
Query: 316 HKANVNCLAMGHKSNQVLATGGDDKKVNLWAI----GRQSCLMSLSGHTTPVECVCFGHS 483
HK V CL + ++ +G D + +W G CL L+GH PV+C+
Sbjct: 342 HKLAVLCLVA---AGNLMFSGSADLGIRVWRRPEGGGEHVCLSVLTGHAGPVKCLAVERD 398
Query: 484 EDLV 495
++ V
Sbjct: 399 QESV 402
>At3g24210.1 68416.m03038 ankyrin repeat family protein contains
ankyrin repeats, Pfam domain PF00023
Length = 607
Score = 31.1 bits (67), Expect = 0.70
Identities = 12/25 (48%), Positives = 18/25 (72%)
Frame = +3
Query: 354 VQSGFSNWRR*QKSKFMGNWKTKLF 428
V S +NWRR +KS+ +G WK K++
Sbjct: 272 VLSPQTNWRRQEKSEMVGPWKAKVY 296
>At4g04940.1 68417.m00718 transducin family protein / WD-40 repeat
family protein contains seven G-protein beta WD-40
repeats
Length = 910
Score = 30.7 bits (66), Expect = 0.93
Identities = 15/53 (28%), Positives = 24/53 (45%)
Frame = +1
Query: 349 HKSNQVLATGGDDKKVNLWAIGRQSCLMSLSGHTTPVECVCFGHSEDLVCAGS 507
H+ N +LAT DD + L+ + + GHT + +CF V + S
Sbjct: 524 HRVNGLLATVADDFVIRLYDVVTLKMVREFRGHTDRITDLCFSEDGKWVISSS 576
>At3g08850.1 68416.m01029 transducin family protein / WD-40 repeat
family protein similar to WD-repeat protein mip1
(SP:P87141) [Schizosaccharomyces pombe]; contains Pfam
PF00400: WD domain, G-beta repeat (5 copies, 1 weak)
Length = 1344
Score = 30.7 bits (66), Expect = 0.93
Identities = 12/29 (41%), Positives = 16/29 (55%)
Frame = +3
Query: 576 GAIKCMDFHPYGDYLTTGSCDSNVKPMGH 662
G++ C+ FHPY L G+ DS V H
Sbjct: 1310 GSVSCLTFHPYQVLLAAGAADSFVSIYTH 1338
>At5g24520.3 68418.m02893 transparent testa glabra 1 protein (TTG1)
identical to transparent testa glabra 1 (Ttg1) protein
(GI:10177852) {Arabidopsis thaliana}; contains Pfam
PF00400: WD domain, G-beta repeat (4 copies,1 weak);
Length = 341
Score = 30.3 bits (65), Expect = 1.2
Identities = 11/32 (34%), Positives = 21/32 (65%)
Frame = +1
Query: 316 HKANVNCLAMGHKSNQVLATGGDDKKVNLWAI 411
H+A+VN +A +S + + +GGDD + +W +
Sbjct: 263 HQASVNAIAWAPQSCKHICSGGDDTQALIWEL 294
>At5g24520.2 68418.m02892 transparent testa glabra 1 protein (TTG1)
identical to transparent testa glabra 1 (Ttg1) protein
(GI:10177852) {Arabidopsis thaliana}; contains Pfam
PF00400: WD domain, G-beta repeat (4 copies,1 weak);
Length = 341
Score = 30.3 bits (65), Expect = 1.2
Identities = 11/32 (34%), Positives = 21/32 (65%)
Frame = +1
Query: 316 HKANVNCLAMGHKSNQVLATGGDDKKVNLWAI 411
H+A+VN +A +S + + +GGDD + +W +
Sbjct: 263 HQASVNAIAWAPQSCKHICSGGDDTQALIWEL 294
>At5g24520.1 68418.m02891 transparent testa glabra 1 protein (TTG1)
identical to transparent testa glabra 1 (Ttg1) protein
(GI:10177852) {Arabidopsis thaliana}; contains Pfam
PF00400: WD domain, G-beta repeat (4 copies,1 weak);
Length = 341
Score = 30.3 bits (65), Expect = 1.2
Identities = 11/32 (34%), Positives = 21/32 (65%)
Frame = +1
Query: 316 HKANVNCLAMGHKSNQVLATGGDDKKVNLWAI 411
H+A+VN +A +S + + +GGDD + +W +
Sbjct: 263 HQASVNAIAWAPQSCKHICSGGDDTQALIWEL 294
>At5g08560.1 68418.m01018 transducin family protein / WD-40 repeat
family protein contains 7 WD-40 repeats (PF00400);
similar to will die slowly protein (WDS) (SP:Q9V3J8)
[Drosophila melanogaster]
Length = 589
Score = 30.3 bits (65), Expect = 1.2
Identities = 14/46 (30%), Positives = 21/46 (45%), Gaps = 1/46 (2%)
Frame = +3
Query: 525 IWDLEAAKLLRTFTGHXGAIKCMDFHPYG-DYLTTGSCDSNVKPMG 659
IW KL+ GH GA+ C+ + P L + S D ++ G
Sbjct: 515 IWHRSTGKLIVELPGHAGAVNCVSWSPTNLHMLASASDDGTIRIWG 560
Score = 29.1 bits (62), Expect = 2.8
Identities = 11/34 (32%), Positives = 18/34 (52%)
Frame = +1
Query: 367 LATGGDDKKVNLWAIGRQSCLMSLSGHTTPVECV 468
+A+G +D +V +W ++ L GH V CV
Sbjct: 504 IASGSEDSQVYIWHRSTGKLIVELPGHAGAVNCV 537
Score = 29.1 bits (62), Expect = 2.8
Identities = 10/39 (25%), Positives = 20/39 (51%)
Frame = +1
Query: 301 LQFVAHKANVNCLAMGHKSNQVLATGGDDKKVNLWAIGR 417
++ H VNC++ + +LA+ DD + +W + R
Sbjct: 525 VELPGHAGAVNCVSWSPTNLHMLASASDDGTIRIWGLDR 563
>At4g38480.1 68417.m05438 transducin family protein / WD-40 repeat
family protein contains contains Pfam PF00400: WD
domain, G-beta repeat (7 copies, 3 weak);similar to gene
PC326 protein - mouse, PIR2:S37694
Length = 471
Score = 30.3 bits (65), Expect = 1.2
Identities = 11/46 (23%), Positives = 23/46 (50%)
Frame = +3
Query: 513 GALKIWDLEAAKLLRTFTGHXGAIKCMDFHPYGDYLTTGSCDSNVK 650
G + IW + +LLR + C++ HP+ + + D+++K
Sbjct: 332 GRIFIWRKKDGELLRAMEADRHVVNCIESHPHMPLMCSSGIDTDIK 377
Score = 29.1 bits (62), Expect = 2.8
Identities = 21/68 (30%), Positives = 32/68 (47%), Gaps = 2/68 (2%)
Frame = +1
Query: 250 FSNNLLITMEATRR-SWKLQFVAHKANVNCLAMGHKSNQVLATGGDDKKVNLWAIGRQSC 426
FSN + + RR + HK VN ++ + +L +G DD++V LW S
Sbjct: 31 FSNRFSASEDLLRRLGLDKKLDKHKGCVNTVSF-NADGDILLSGSDDRQVILWDWQTASV 89
Query: 427 LMSL-SGH 447
+S SGH
Sbjct: 90 KLSFDSGH 97
>At3g26480.1 68416.m03301 transducin family protein / WD-40 repeat
family protein contains Pfam profile: PF00400 WD domain,
G-beta repeat (5 copies, 2 below cutoff); related to
LACK protective antigen (GI:13625467) [Leishmania
donovani]
Length = 764
Score = 30.3 bits (65), Expect = 1.2
Identities = 12/30 (40%), Positives = 19/30 (63%), Gaps = 2/30 (6%)
Frame = +3
Query: 489 LSMCWFTT--GALKIWDLEAAKLLRTFTGH 572
+S CW ++ G ++IW+ A KLL+ F H
Sbjct: 64 VSYCWTSSLDGKIRIWEFSAPKLLKIFDTH 93
>At2g37160.1 68415.m04559 transducin family protein / WD-40 repeat
family protein contains 4 WD-40 repeats (PF00400);
similar to Dystrophia myotonica-containing WD repeat
motif protein DMR-N9 protein (DMWD) (DM9) (SP:Q08274)
[Mus musculus]; simlar to DMR protein GI:18028289 [Homo
sapiens];
Length = 544
Score = 30.3 bits (65), Expect = 1.2
Identities = 16/46 (34%), Positives = 23/46 (50%)
Frame = +3
Query: 513 GALKIWDLEAAKLLRTFTGHXGAIKCMDFHPYGDYLTTGSCDSNVK 650
G L+I+D KL+ + GA+ C + G YL TG D V+
Sbjct: 325 GYLRIFDFSTQKLVCGVKSYYGALLCCAWSMDGKYLLTGGEDDLVQ 370
>At1g15470.1 68414.m01860 transducin family protein / WD-40 repeat
family protein Strong similarity to gb AF096285
serine-threonine kinase receptor-associated protein from
Mus musculus and contains 5 PF|00400 WD40, G-beta repeat
domains. EST gb|F14050 comes from this gene
Length = 333
Score = 30.3 bits (65), Expect = 1.2
Identities = 15/53 (28%), Positives = 25/53 (47%), Gaps = 4/53 (7%)
Frame = +3
Query: 504 FTTGALKIW----DLEAAKLLRTFTGHXGAIKCMDFHPYGDYLTTGSCDSNVK 650
F G +W D + + + GH G + C+ + P G+ T+GS D V+
Sbjct: 238 FIAGGEDMWVHRFDFQTGEEIGCNKGHHGPVHCVRYAPGGESYTSGSEDGTVR 290
>At5g43930.1 68418.m05374 transducin family protein / WD-40 repeat
family protein contains 4 WD-40 repeats (PF00400);
similar to WD-repeat protein 5 (SP:Q9UGP9) [Homo
sapiens]
Length = 726
Score = 29.9 bits (64), Expect = 1.6
Identities = 15/45 (33%), Positives = 23/45 (51%), Gaps = 1/45 (2%)
Frame = +3
Query: 519 LKIWDLEAAKLLRTFTGHXGAIKCMDFHP-YGDYLTTGSCDSNVK 650
+KI D E L+ TGH + FHP + + + +GS D V+
Sbjct: 130 VKIIDCETGNCLKVLTGHRRTPWVVRFHPHHSEIVASGSLDLEVR 174
>At4g35140.1 68417.m04996 transducin family protein / WD-40 repeat
family protein contains 6 (3 significant) WD-40 repeats;
similar to PC326 protein (GI:200241) (PIR2:S37694)
[Mus musculus]; Human (H326) mRNA, Homo sapiens,
gb:U06631
Length = 496
Score = 29.9 bits (64), Expect = 1.6
Identities = 11/46 (23%), Positives = 23/46 (50%)
Frame = +3
Query: 513 GALKIWDLEAAKLLRTFTGHXGAIKCMDFHPYGDYLTTGSCDSNVK 650
G + IW + +L+R + C++ HP+ L + +S++K
Sbjct: 356 GRIFIWRKKGGELIRVMEADRHVVNCIEPHPHIPVLASSGIESDIK 401
Score = 29.5 bits (63), Expect = 2.1
Identities = 22/70 (31%), Positives = 36/70 (51%), Gaps = 1/70 (1%)
Frame = +1
Query: 253 SNNLLITMEATRRSWKLQFVAHKANVNCLAMGHKSNQVLATGGDDKKVNLWAIGRQSCLM 432
S NL++ +E ++ K HK VN ++ + + VL +G DD++V LW + +
Sbjct: 42 SENLVLRLEIYKKLEK-----HKGCVNTVSFNAEGD-VLISGSDDRRVVLWDWQLGNVKL 95
Query: 433 SL-SGHTTPV 459
S SGH V
Sbjct: 96 SFHSGHANNV 105
>At4g35050.1 68417.m04974 WD-40 repeat protein (MSI3) contains 5
WD-40 repeats (PF0400); identical to WD-40 repeat
protein MSI3 (SP:O22469) [Arabidopsis thaliana]
Length = 424
Score = 29.9 bits (64), Expect = 1.6
Identities = 15/44 (34%), Positives = 22/44 (50%), Gaps = 1/44 (2%)
Frame = +3
Query: 519 LKIWDLEAAKLLRTFTGHXGAIKCMDFHPYGDY-LTTGSCDSNV 647
L IWDL ++ H I + F+P+ ++ L T S DS V
Sbjct: 243 LVIWDLRTNQMQHQVKVHEREINYLSFNPFNEWVLATASSDSTV 286
>At3g42660.1 68416.m04436 transducin family protein / WD-40 repeat
family protein contains 5 WD-40 repeats (PF00400); AND-1
protein - Homo sapiens, EMBL:AJ006266
Length = 951
Score = 29.9 bits (64), Expect = 1.6
Identities = 11/36 (30%), Positives = 20/36 (55%)
Frame = +3
Query: 519 LKIWDLEAAKLLRTFTGHXGAIKCMDFHPYGDYLTT 626
+K+ + ++R GH G + +DFHP G+ L +
Sbjct: 128 IKLINTFDGSIVRVLKGHKGPVTGLDFHPNGELLAS 163
>At3g19590.1 68416.m02484 WD-40 repeat family protein / mitotic
checkpoint protein, putative contains 5 WD-40 repeats
(PF00400) (1 weak); similar to testis mitotic checkpoint
protein BUB3 (GB:AAC28439,SP|O43684)[Homo sapiens]
Length = 340
Score = 29.9 bits (64), Expect = 1.6
Identities = 18/60 (30%), Positives = 25/60 (41%)
Frame = +1
Query: 328 VNCLAMGHKSNQVLATGGDDKKVNLWAIGRQSCLMSLSGHTTPVECVCFGHSEDLVCAGS 507
VN +A H ATGG D VN+W + L S + T + + F L+ S
Sbjct: 244 VNSIAF-HPIYGTFATGGCDGFVNIWDGNNKKRLYQYSKYPTSISALSFSRDGQLLAVAS 302
>At2g16780.1 68415.m01924 WD-40 repeat protein (MSI2) contains 5
WD-40 repeats (PF0400); identical to WD-40 repeat
protein MSI2 (SP:O22468) [Arabidopsis thaliana] WD-40
repeats (PF0400);
Length = 415
Score = 29.5 bits (63), Expect = 2.1
Identities = 14/46 (30%), Positives = 22/46 (47%), Gaps = 1/46 (2%)
Frame = +3
Query: 513 GALKIWDLEAAKLLRTFTGHXGAIKCMDFHPYGDY-LTTGSCDSNV 647
G L IWD ++ H + + F+P+ ++ L T S DS V
Sbjct: 240 GRLVIWDTRTNQMQHQVKVHEREVNYLSFNPFNEWVLATASSDSTV 285
>At1g80670.1 68414.m09466 transducin family protein / WD-40 repeat
family protein contains 5 WD-40 repeats (PF00400) (1
weak); similar to Hypothetical RAE1-like
protein.(SP:Q38942) [Arabidopsis thaliana]; similar to
mRNA-associated protein mrnp 41 ((mRNA export protein)
(GB:AAC28126) (GI:1903456)(RAE1) (MRNP41) (SP:P78406)
[Homo sapiens]
Length = 349
Score = 29.5 bits (63), Expect = 2.1
Identities = 16/52 (30%), Positives = 22/52 (42%)
Frame = +1
Query: 325 NVNCLAMGHKSNQVLATGGDDKKVNLWAIGRQSCLMSLSGHTTPVECVCFGH 480
+VN L H + AT G D N W + L ++S P+ C F H
Sbjct: 248 SVNSLNF-HPVHGTFATAGSDGAFNFWDKDSKQRLKAMSRCNQPIPCSSFNH 298
>At1g12910.1 68414.m01499 flower pigmentation protein (AN11)
contains 3 WD-40 repeats (PF00400); identical to
GB:AAC18912 from [Arabidopsis thaliana] (Genes Dev. 11
(11), 1422-1434 (1997))
Length = 346
Score = 29.5 bits (63), Expect = 2.1
Identities = 12/32 (37%), Positives = 19/32 (59%)
Frame = +1
Query: 316 HKANVNCLAMGHKSNQVLATGGDDKKVNLWAI 411
H+A+VN +A S+ + T GDD + +W I
Sbjct: 266 HQASVNAIAWAPHSSCHICTAGDDSQALIWDI 297
>At4g11920.1 68417.m01895 WD-40 repeat family protein contains 6 WD
repeats (PF00400); similar to Fzr1 (GI:6463679) {Homo
sapiens}; similar to WD repeat protein Srw1
-Schizosaccharomyces pombe,PID:d1023012
Length = 475
Score = 29.1 bits (62), Expect = 2.8
Identities = 17/61 (27%), Positives = 31/61 (50%), Gaps = 1/61 (1%)
Frame = +3
Query: 468 VFWSFRRLSMCWFTT-GALKIWDLEAAKLLRTFTGHXGAIKCMDFHPYGDYLTTGSCDSN 644
V W+ R + T+ G ++IWD+ K +RT GH + + + L++GS D +
Sbjct: 215 VGWALRGTHLAIGTSSGTVQIWDVLRCKNIRTMEGHRLRVGALAWS--SSVLSSGSRDKS 272
Query: 645 V 647
+
Sbjct: 273 I 273
>At3g26640.1 68416.m03329 transducin family protein / WD-40 repeat
family protein contains 3 WD-40 repeats (PF00400);
similar to ATAN11 (GI:2290528) [Arabidopsis thaliana]
(Genes Dev. 11 (11), 1422-1434 (1997)); contains Pfam
profile: PF00400 WD domain, G-beta repeat (3 copies)
Length = 346
Score = 29.1 bits (62), Expect = 2.8
Identities = 11/32 (34%), Positives = 19/32 (59%)
Frame = +1
Query: 316 HKANVNCLAMGHKSNQVLATGGDDKKVNLWAI 411
H+A+VN +A S+ + + GDD + +W I
Sbjct: 266 HQASVNAIAWAPHSSSHICSAGDDSQALIWDI 297
>At2g19540.1 68415.m02283 transducin family protein / WD-40 repeat
family protein contains WD-40 repeats (PF00400); similar
to Glutamate-rich WD repeat protein (GRWD)
(SP:Q9BQ67)[Homo sapiens]
Length = 469
Score = 29.1 bits (62), Expect = 2.8
Identities = 13/33 (39%), Positives = 21/33 (63%)
Frame = +1
Query: 289 RSWKLQFVAHKANVNCLAMGHKSNQVLATGGDD 387
+S L F AH A+VN ++ ++ +LA+G DD
Sbjct: 303 KSPALSFKAHNADVNVISWNRLASCMLASGSDD 335
>At1g80710.1 68414.m09470 transducin family protein / WD-40 repeat
family protein contains 3 WD-40 repeats (PF00400);
similar to damage-specific DNA-binding protein 2 (DDB2)
[Mus musculus]
Length = 516
Score = 29.1 bits (62), Expect = 2.8
Identities = 14/43 (32%), Positives = 21/43 (48%), Gaps = 1/43 (2%)
Frame = +3
Query: 513 GALKIWDLEAAKLLRTFTGHXGAIKCMDFHPYGDY-LTTGSCD 638
G +WDL A K + + H I +DF+P + + T S D
Sbjct: 328 GVFNVWDLRAGKSVFHWELHERRINSIDFNPQNPHVMATSSTD 370
>At1g73720.1 68414.m08536 transducin family protein / WD-40 repeat
family protein contains 5 WD-40 repeats (PF00400);
similar to Will die slowly protein
(SP:Q9V3J8)[Drosophila melanogaster]
Length = 511
Score = 29.1 bits (62), Expect = 2.8
Identities = 15/43 (34%), Positives = 21/43 (48%)
Frame = +3
Query: 522 KIWDLEAAKLLRTFTGHXGAIKCMDFHPYGDYLTTGSCDSNVK 650
+I L++ KLL+ F GH + F G + T S D VK
Sbjct: 330 RIHGLKSGKLLKEFRGHTSYVNHAIFTSDGSRIITASSDCTVK 372
>At1g19750.1 68414.m02469 transducin family protein / WD-40 repeat
family protein similar to Cockayne syndrome
complementaion group A proteins (GI:18077663)[Mus
musculus] and (SP:Q13216)[Homo sapiens]; confirmed by
full-length cDNA GI:15982896
Length = 450
Score = 29.1 bits (62), Expect = 2.8
Identities = 15/46 (32%), Positives = 18/46 (39%)
Frame = +1
Query: 316 HKANVNCLAMGHKSNQVLATGGDDKKVNLWAIGRQSCLMSLSGHTT 453
H+ V + S VL TGG D + W I R C L T
Sbjct: 189 HRDGVMSVEWSTSSEWVLYTGGCDGAIRFWDIRRAGCFRVLDNSQT 234
>At5g42010.1 68418.m05114 WD-40 repeat family protein contains Pfam
PF00400: WD domain, G-beta repeat; similar to WD-repeat
protein 5 (WD repeat protein BIG-3) (SP: Q9UGP9) [Homo
sapiens]
Length = 709
Score = 28.7 bits (61), Expect = 3.8
Identities = 16/62 (25%), Positives = 26/62 (41%)
Frame = +1
Query: 304 QFVAHKANVNCLAMGHKSNQVLATGGDDKKVNLWAIGRQSCLMSLSGHTTPVECVCFGHS 483
+F H + L+ K L + D+ V LW +G + + H + V CV F
Sbjct: 358 EFRGHTGEILDLSWSEKG--FLLSSSVDETVRLWRVGSSDECIRVFSHKSFVTCVAFNPV 415
Query: 484 ED 489
+D
Sbjct: 416 DD 417
Score = 27.5 bits (58), Expect = 8.7
Identities = 10/39 (25%), Positives = 20/39 (51%)
Frame = +1
Query: 301 LQFVAHKANVNCLAMGHKSNQVLATGGDDKKVNLWAIGR 417
++ +HK+ V C+A + +G D KV +W + +
Sbjct: 398 IRVFSHKSFVTCVAFNPVDDNYFISGSIDGKVRIWDVSQ 436
>At4g29730.1 68417.m04233 WD-40 repeat family protein contains 5
WD-40 repeats (PF0400); similar to WD-40 repeat protein
MSI4 (SP:O22607) [Arabidopsis thaliana]
Length = 496
Score = 28.7 bits (61), Expect = 3.8
Identities = 19/67 (28%), Positives = 27/67 (40%), Gaps = 3/67 (4%)
Frame = +1
Query: 316 HKANVNCLAMGHKSNQVLATGGDDKKVNLW--AIGRQSCLMSLSGHTTPVECVCFG-HSE 486
HK V +A S Q + GDD + LW G + H + CV + H
Sbjct: 280 HKDTVEDVAFCPSSAQEFCSVGDDSCLMLWDARTGTSPAMKVEKAHDADLHCVDWNPHDN 339
Query: 487 DLVCAGS 507
+L+ GS
Sbjct: 340 NLILTGS 346
>At2g32950.1 68415.m04039 COP1 regulatory protein photomorphogenesis
repressor; identical to COP1 regulatory protein/FUSCA
protein FUS1 GI:402685 SP:P43254
Length = 675
Score = 28.7 bits (61), Expect = 3.8
Identities = 13/42 (30%), Positives = 20/42 (47%)
Frame = +3
Query: 507 TTGALKIWDLEAAKLLRTFTGHXGAIKCMDFHPYGDYLTTGS 632
T L++WD++ +RTF GH + +YL GS
Sbjct: 568 TDSTLRLWDVKDNLPVRTFRGHTNEKNFVGLTVNSEYLACGS 609
Score = 27.5 bits (58), Expect = 8.7
Identities = 15/83 (18%), Positives = 37/83 (44%), Gaps = 1/83 (1%)
Frame = +1
Query: 262 LLITMEATRRSWKLQFVAHKANVNCLAMGHKSNQVLATGGDDKKVNLWAIGRQSCLMSLS 441
++ + T R +++ H+ + +L +G DD KV +W +++ ++++
Sbjct: 444 IVTVWDVTTRQSLMEYEEHEKRAWSVDFSRTEPSMLVSGSDDCKVKVWCTRQEASVINID 503
Query: 442 GHTTPVECVCFG-HSEDLVCAGS 507
+ CV + S + + GS
Sbjct: 504 MKAN-ICCVKYNPGSSNYIAVGS 525
>At1g27470.1 68414.m03349 transducin-related / WD-40 repeat
protein-related contains 6 WD-40 repeats (PF00400) (2
weak); related to KIAA1988 protein (GI:18916910) [Homo
sapiens]
Length = 810
Score = 28.7 bits (61), Expect = 3.8
Identities = 11/47 (23%), Positives = 23/47 (48%)
Frame = +3
Query: 507 TTGALKIWDLEAAKLLRTFTGHXGAIKCMDFHPYGDYLTTGSCDSNV 647
+TG+++ WD + LL+ + H G + + P + + + D V
Sbjct: 267 STGSVQFWDSQHGTLLQAHSNHKGDVNALAASPSHNRVFSAGADGQV 313
>At4g07410.1 68417.m01136 transducin family protein / WD-40 repeat
family protein contains 7 WD-40 repeats (PF00400) (2
weak); similar to Vegetatible incompatibility protein
HET-E-1 (SP:Q00808) {Podospora anserina}
Length = 815
Score = 28.3 bits (60), Expect = 5.0
Identities = 12/47 (25%), Positives = 21/47 (44%)
Frame = +3
Query: 507 TTGALKIWDLEAAKLLRTFTGHXGAIKCMDFHPYGDYLTTGSCDSNV 647
+TG ++ WD E LL + H G + + P + + + D V
Sbjct: 267 STGTVQFWDSEHGTLLEAHSNHKGDVNTLAAAPSHNRVFSAGADGQV 313
>At3g53390.1 68416.m05892 transducin family protein / WD-40 repeat
family protein contains 5 WD-40 repeats (PF00400);
similar to Dystrophia myotonica-containing WD repeat
motif protein DMR-N9 protein (DMWD) (DM9) (SP:Q08274)
[Mus musculus]; simlar to DMR protein GI:18028289 [Homo
sapiens];
Length = 558
Score = 28.3 bits (60), Expect = 5.0
Identities = 15/46 (32%), Positives = 23/46 (50%)
Frame = +3
Query: 513 GALKIWDLEAAKLLRTFTGHXGAIKCMDFHPYGDYLTTGSCDSNVK 650
G L+I+D KL+ + GA+ C + G Y+ TG D V+
Sbjct: 325 GYLRIFDFLTQKLVCGGKSYYGALLCCSWSMDGKYILTGGEDDLVQ 370
>At3g26410.1 68416.m03293 expressed protein
Length = 477
Score = 28.3 bits (60), Expect = 5.0
Identities = 11/21 (52%), Positives = 14/21 (66%)
Frame = +2
Query: 269 LQWKLPEDHGNYNLLHTKQMS 331
LQW+LPE+H N H Q+S
Sbjct: 36 LQWRLPENHHNDTPFHFVQLS 56
>At2g19430.1 68415.m02267 transducin family protein / WD-40 repeat
family protein similar to WD-repeat protein 5
(SP:Q9UGP9) [Homo sapiens]; contains 7 Trp-Asp WD-40
repeats
Length = 367
Score = 28.3 bits (60), Expect = 5.0
Identities = 12/41 (29%), Positives = 19/41 (46%)
Frame = +3
Query: 528 WDLEAAKLLRTFTGHXGAIKCMDFHPYGDYLTTGSCDSNVK 650
WD+E+ K+ TF GH + + + TGS D +
Sbjct: 186 WDVESGKIKMTFKGHSDYLHTVVSRSSASQILTGSEDGTAR 226
>At1g65580.1 68414.m07439 endonuclease/exonuclease/phosphatase
family protein similar to inositol polyphosphate
5-phosphatase II isoform (GI:15418718) [Mus musculus];
contains 6 (5 weak) Pfam: Pf00400 WD domain, G-beta
repeats and Pfam PF03372:
Endonuclease/Exonuclease/phosphatase family
Length = 1101
Score = 28.3 bits (60), Expect = 5.0
Identities = 14/41 (34%), Positives = 24/41 (58%)
Frame = +3
Query: 462 MCVFWSFRRLSMCWFTTGALKIWDLEAAKLLRTFTGHXGAI 584
+C+F RL + ++ G +++WDLE KLL + H G +
Sbjct: 449 LCMFTFCSRLWV-GYSNGTVQVWDLE-GKLLGGWVAHSGPV 487
>At1g62390.1 68414.m07039 octicosapeptide/Phox/Bem1p (PB1)
domain-containing protein / tetratricopeptide repeat
(TPR)-containing protein contains Pfam profiles PF00564:
PB1 domain, PF00515: TPR Domain
Length = 751
Score = 28.3 bits (60), Expect = 5.0
Identities = 12/28 (42%), Positives = 18/28 (64%)
Frame = +1
Query: 313 AHKANVNCLAMGHKSNQVLATGGDDKKV 396
A +A++ + H SN+ AT GD+KKV
Sbjct: 721 ASEADIATVVKNHCSNEAAATEGDEKKV 748
>At1g62050.1 68414.m06999 ankyrin repeat protein-related contains
weak hit to Pfam profile PF00023: Ankyrin repeat
Length = 497
Score = 28.3 bits (60), Expect = 5.0
Identities = 9/22 (40%), Positives = 16/22 (72%)
Frame = +3
Query: 363 GFSNWRR*QKSKFMGNWKTKLF 428
G +NWRR +K + +G WK +++
Sbjct: 154 GRTNWRRQEKMENVGEWKARVY 175
>At1g27840.1 68414.m03412 transducin family protein / WD-40 repeat
family protein contains similarity to cockayne syndrome
complementation group A protein GB:U28413 GI:975301 from
[Homo sapiens]; confirmed by cDNA gi:1598289
Length = 450
Score = 28.3 bits (60), Expect = 5.0
Identities = 15/46 (32%), Positives = 18/46 (39%)
Frame = +1
Query: 316 HKANVNCLAMGHKSNQVLATGGDDKKVNLWAIGRQSCLMSLSGHTT 453
H+ V + S VL TGG D + W I R C L T
Sbjct: 189 HRDGVMSVEWSTSSEWVLYTGGCDGAIRFWDIRRAGCFRVLDQSQT 234
>At5g18065.1 68418.m02118 expressed protein
Length = 252
Score = 27.9 bits (59), Expect = 6.6
Identities = 8/35 (22%), Positives = 25/35 (71%)
Frame = +1
Query: 166 SAQYSQILFINIVTQTLLVLKLEILFMEFSNNLLI 270
++Q++ ++ +N+++ ++LKL+ ++ E+S L+
Sbjct: 34 ASQHAAMVAVNLISSARVILKLDAVYTEYSAQYLV 68
>At5g01770.1 68418.m00096 transducin family protein / WD-40 repeat
family protein similar to WD-repeat protein mip1
(SP:P87141) [Schizosaccharomyces pombe]
Length = 1354
Score = 27.9 bits (59), Expect = 6.6
Identities = 17/50 (34%), Positives = 22/50 (44%), Gaps = 1/50 (2%)
Frame = +3
Query: 516 ALKIWDLEAAKLLRTFTGHX-GAIKCMDFHPYGDYLTTGSCDSNVKPMGH 662
+LK L K +F G G + C+ FHPY L G+ S V H
Sbjct: 1298 SLKGEQLGIIKYHTSFMGQQIGPVSCLAFHPYQMLLAAGAAGSFVSLYTH 1347
>At4g25440.1 68417.m03663 WD-40 repeat family protein / zfwd1
protein (ZFWD1) identical to zfwd1 protein (GI:12057164)
[Arabidopsis thaliana]
Length = 430
Score = 27.9 bits (59), Expect = 6.6
Identities = 10/37 (27%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
Frame = +1
Query: 367 LATGGDDKKVNLWAIGRQSCLMSLSGHTTPV-ECVCF 474
L +G D + +W++ C+ +L+ HT+ V +C+
Sbjct: 280 LYSGAMDNSIKVWSLDNLQCIQTLTEHTSVVMSLICW 316
>At4g21530.1 68417.m03111 transducin family protein / WD-40 repeat
family protein contains 1 WD-40 repeat (PF00400);
similar to anaphase-promoting complex subunit 4
GI:6180011 [Homo sapiens]; supported by EST GB:AU237382
Length = 510
Score = 27.9 bits (59), Expect = 6.6
Identities = 14/45 (31%), Positives = 23/45 (51%)
Frame = +3
Query: 513 GALKIWDLEAAKLLRTFTGHXGAIKCMDFHPYGDYLTTGSCDSNV 647
G + + D+E KLLR H A+ C+++ G T S + +V
Sbjct: 86 GTISLHDVENGKLLRNLKPHDVAVVCLNWEEDGQSNTDESGNFSV 130
>At3g45620.1 68416.m04927 transducin family protein / WD-40 repeat
family protein contains 7 WD-40 repeats; similar to
PC326 protein (GI:200241) (PIR2:S37694) [Mus
musculus];Human (H326) translated mRNA - Homo sapiens,
EMBL:HS06631
Length = 481
Score = 27.9 bits (59), Expect = 6.6
Identities = 12/46 (26%), Positives = 22/46 (47%)
Frame = +3
Query: 513 GALKIWDLEAAKLLRTFTGHXGAIKCMDFHPYGDYLTTGSCDSNVK 650
G + IW + KL+R G + ++ HP+ L + + +VK
Sbjct: 343 GHIFIWKKKGGKLVRAMVGDRRVVNQLESHPHIPLLASCGIEKSVK 388
>At2g19520.1 68415.m02281 WD-40 repeat protein (MSI4) contains 6 (4
significant) WD-40 repeats (PF0400); identical to WD-40
repeat protein MSI4 (SP:O22607) [Arabidopsis thaliana]
Length = 507
Score = 27.9 bits (59), Expect = 6.6
Identities = 12/40 (30%), Positives = 19/40 (47%)
Frame = +1
Query: 304 QFVAHKANVNCLAMGHKSNQVLATGGDDKKVNLWAIGRQS 423
+F HKA V C+ + V + +D +N+W R S
Sbjct: 381 KFEGHKAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYDRVS 420
>At1g49910.1 68414.m05597 WD-40 repeat family protein / mitotic
checkpoint protein, putative contains 5 WD-40 repeats
(PF00400) (1 weak); similar to testis mitotic checkpoint
protein BUB3 (GB:AAC28439,SP:O43684)[Homo sapiens]
Length = 339
Score = 27.9 bits (59), Expect = 6.6
Identities = 17/60 (28%), Positives = 25/60 (41%)
Frame = +1
Query: 328 VNCLAMGHKSNQVLATGGDDKKVNLWAIGRQSCLMSLSGHTTPVECVCFGHSEDLVCAGS 507
VN +A H A+GG D VN+W + L S + T + + F L+ S
Sbjct: 243 VNAIAF-HPIYGTFASGGCDGFVNIWDGNNKKRLYQYSKYPTSIAALSFSRDGGLLAVAS 301
>At1g04780.1 68414.m00474 ankyrin repeat family protein contains
Pfam PF00023: Ankyrin repeat
Length = 664
Score = 27.9 bits (59), Expect = 6.6
Identities = 8/19 (42%), Positives = 15/19 (78%)
Frame = +3
Query: 375 WRR*QKSKFMGNWKTKLFN 431
WRR +K++ +G WK K+++
Sbjct: 281 WRRQEKTEMVGQWKAKVYD 299
>At5g45760.2 68418.m05626 transducin family protein / WD-40 repeat
family protein
Length = 334
Score = 27.5 bits (58), Expect = 8.7
Identities = 11/32 (34%), Positives = 19/32 (59%), Gaps = 2/32 (6%)
Frame = +1
Query: 316 HKANVNCLAMG--HKSNQVLATGGDDKKVNLW 405
H + V+C+A + + L +GG+DK V +W
Sbjct: 247 HNSAVSCVAFSLFQEKGRFLISGGNDKTVKIW 278
>At5g45760.1 68418.m05625 transducin family protein / WD-40 repeat
family protein
Length = 360
Score = 27.5 bits (58), Expect = 8.7
Identities = 11/32 (34%), Positives = 19/32 (59%), Gaps = 2/32 (6%)
Frame = +1
Query: 316 HKANVNCLAMG--HKSNQVLATGGDDKKVNLW 405
H + V+C+A + + L +GG+DK V +W
Sbjct: 273 HNSAVSCVAFSLFQEKGRFLISGGNDKTVKIW 304
>At1g18830.1 68414.m02345 transducin family protein / WD-40 repeat
family protein similar to Sec31p (GI:13928450) {Oryza
sativa}
Length = 969
Score = 27.5 bits (58), Expect = 8.7
Identities = 14/36 (38%), Positives = 17/36 (47%)
Frame = +1
Query: 316 HKANVNCLAMGHKSNQVLATGGDDKKVNLWAIGRQS 423
HK V L KS LA+G DD V +W + S
Sbjct: 114 HKGPVRGLEFNVKSPNQLASGADDGTVCIWDLANPS 149
>At1g03110.1 68414.m00288 transducin family protein / WD-40 repeat
family protein contains 4 WD-40 repeats (PF00400);
similar to WD-repeat domain 4 protein (GI:9955698) [Mus
musculus]
Length = 427
Score = 27.5 bits (58), Expect = 8.7
Identities = 13/48 (27%), Positives = 21/48 (43%)
Frame = +1
Query: 355 SNQVLATGGDDKKVNLWAIGRQSCLMSLSGHTTPVECVCFGHSEDLVC 498
S ++ + GDDK V +W+ CL ++ V V + VC
Sbjct: 74 SGKLFVSAGDDKLVKIWSADSWRCLNTVCSEKR-VSAVAISSDDSHVC 120
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,348,657
Number of Sequences: 28952
Number of extensions: 291993
Number of successful extensions: 1275
Number of sequences better than 10.0: 170
Number of HSP's better than 10.0 without gapping: 783
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1269
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1432596384
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -