Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060425.seq
         (679 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81119-2|CAB03332.1|  350|Caenorhabditis elegans Hypothetical pr...    31   0.57 
U70850-3|AAB09122.3|  596|Caenorhabditis elegans Zinc finger plu...    29   3.0  
AY289599-1|AAP43944.1|  596|Caenorhabditis elegans ZAG-1 protein.      29   3.0  
AY224511-1|AAP37457.1|  596|Caenorhabditis elegans ZAG-1 protein.      29   3.0  
Z81147-10|CAB03533.3|  671|Caenorhabditis elegans Hypothetical p...    28   7.0  
Z82059-2|CAB04876.3|  557|Caenorhabditis elegans Hypothetical pr...    27   9.3  

>Z81119-2|CAB03332.1|  350|Caenorhabditis elegans Hypothetical
           protein T10H4.3 protein.
          Length = 350

 Score = 31.5 bits (68), Expect = 0.57
 Identities = 18/53 (33%), Positives = 29/53 (54%)
 Frame = +2

Query: 419 ENNFSQTKQRLFLTILLGFYFTILQAYEYIKLLLQLLIEFMDPLFS*QQDFME 577
           ++NF  T Q  F+ I++ F+ T+L     + LLLQL +     + S Q D +E
Sbjct: 190 QSNFDLTNQLCFIEIIIRFFQTLLYPMLTLTLLLQLHMIKKKRIISSQNDKVE 242


>U70850-3|AAB09122.3|  596|Caenorhabditis elegans Zinc finger plus
           homeodomain, axonguidance protein 1 protein.
          Length = 596

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 10/20 (50%), Positives = 15/20 (75%)
 Frame = +2

Query: 314 PSRITPFNPFQIPLLNTIIL 373
           PS +TPFNP+Q+ +   I+L
Sbjct: 82  PSMVTPFNPYQLMMYRNIML 101


>AY289599-1|AAP43944.1|  596|Caenorhabditis elegans ZAG-1 protein.
          Length = 596

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 10/20 (50%), Positives = 15/20 (75%)
 Frame = +2

Query: 314 PSRITPFNPFQIPLLNTIIL 373
           PS +TPFNP+Q+ +   I+L
Sbjct: 82  PSMVTPFNPYQLMMYRNIML 101


>AY224511-1|AAP37457.1|  596|Caenorhabditis elegans ZAG-1 protein.
          Length = 596

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 10/20 (50%), Positives = 15/20 (75%)
 Frame = +2

Query: 314 PSRITPFNPFQIPLLNTIIL 373
           PS +TPFNP+Q+ +   I+L
Sbjct: 82  PSMVTPFNPYQLMMYRNIML 101


>Z81147-10|CAB03533.3|  671|Caenorhabditis elegans Hypothetical
           protein T09E11.4 protein.
          Length = 671

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 15/30 (50%), Positives = 18/30 (60%)
 Frame = +1

Query: 409 LIDRK*LLTNKTKIIFNYFIRILFYYFTSI 498
           LID + LL NKT   F YF    F YFT++
Sbjct: 619 LIDYEPLLFNKTTNRFEYFDSRGFLYFTAV 648


>Z82059-2|CAB04876.3|  557|Caenorhabditis elegans Hypothetical
           protein T27E9.5 protein.
          Length = 557

 Score = 27.5 bits (58), Expect = 9.3
 Identities = 19/53 (35%), Positives = 26/53 (49%)
 Frame = +1

Query: 502 IYKASFTIADRIYGSTFFIATGFHGIHVIIGTLFLLICYIRHLNNHFSKNHPL 660
           IYKA+F  A+      ++   GF G     G LFLLI  +   N  F + HP+
Sbjct: 155 IYKATFGKAENSTEKNYY--DGFLGA----GALFLLISALTFPNGPFIRPHPI 201


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,752,898
Number of Sequences: 27780
Number of extensions: 169286
Number of successful extensions: 400
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 394
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 400
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1539654388
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)