Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060424.seq
         (704 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPMIT.04 |cox3||cytochrome c oxidase 3|Schizosaccharomyces pombe...    80   3e-16

>SPMIT.04 |cox3||cytochrome c oxidase 3|Schizosaccharomyces
           pombe|chr mitochondrial|||Manual
          Length = 273

 Score = 80.2 bits (189), Expect = 3e-16
 Identities = 44/114 (38%), Positives = 61/114 (53%), Gaps = 2/114 (1%)
 Frame = +3

Query: 279 LSPNIEIGRI*PPSRITP--FNPFQIPLLNTIILIRSGVTVT*AHHSLIENNFSQTKQRL 452
           LSP  E+G + PP  I     +P ++PLLNT+IL+ SG ++T AH+SLI  N     + L
Sbjct: 116 LSPTFELGAVWPPVGIADKTIDPLEVPLLNTVILLTSGASLTYAHYSLIARNRENALKGL 175

Query: 453 XLTILLGFYFTILQAYEYMKLLLQLLIEFMDPLFS*QQDFMGIHVIIGTLFLXI 614
            +TI L F F   QAYEY      +        F       GIH+I+GT+ L +
Sbjct: 176 YMTIALSFLFLGGQAYEYWNAPFTISDSVYGASFYFATGLHGIHIIVGTILLLV 229



 Score = 26.6 bits (56), Expect = 3.5
 Identities = 12/24 (50%), Positives = 14/24 (58%)
 Frame = +1

Query: 139 RDISREGTYQGKHTILVNKGLR*G 210
           RD+S E    G HT  V KGL+ G
Sbjct: 69  RDMSTEANIHGAHTKAVTKGLKIG 92



 Score = 25.8 bits (54), Expect = 6.0
 Identities = 11/28 (39%), Positives = 15/28 (53%)
 Frame = +1

Query: 616 AIFDILXNHFSKNHHFGFESCSLDIGHF 699
           A ++I   H +  HH GFE C +   HF
Sbjct: 230 ATYNIYTYHLTNTHHNGFE-CGIYYWHF 256


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,180,783
Number of Sequences: 5004
Number of extensions: 35740
Number of successful extensions: 68
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 64
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 66
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 327172622
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)