Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060424.seq
         (704 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g07687.1 68415.m00937 cytochrome c oxidase subunit 3 identica...    89   3e-18
At5g21140.1 68418.m02524 expressed protein                             27   9.2  

>At2g07687.1 68415.m00937 cytochrome c oxidase subunit 3 identical
           to cytochrome c oxidase subunit 3 (GI:15215914)
           [Arabidopsis thaliana]; similar to Cytochrome c oxidase
           polypeptide III (EC 1.9.3.1) (Swiss-Prot:P92514)
           [Arabidopsis thaliana]
          Length = 265

 Score = 89.0 bits (211), Expect = 3e-18
 Identities = 49/118 (41%), Positives = 62/118 (52%)
 Frame = +3

Query: 279 LSPNIEIGRI*PPSRITPFNPFQIPLLNTIILIRSGVTVT*AHHSLIENNFSQTKQRLXL 458
           L+P +EIG I PP  I   +P++IP LNT IL  SG  VT AHH+++     +    L  
Sbjct: 109 LAPAVEIGGIWPPKGIEVLDPWEIPFLNTPILPSSGAAVTWAHHAILAGKEKRAVYALVA 168

Query: 459 TILLGFYFTILQAYEYMKLLLQLLIEFMDPLFS*QQDFMGIHVIIGTLFLXICYIRHF 632
           T+LL   FT  Q  EY +    +        F     F G HVIIGTLFL IC IR +
Sbjct: 169 TVLLALVFTGFQGMEYYQAPFTISDSIYGSTFFLATGFHGFHVIIGTLFLIICGIRQY 226


>At5g21140.1 68418.m02524 expressed protein
          Length = 312

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 13/28 (46%), Positives = 17/28 (60%)
 Frame = -3

Query: 570 NPVAMKKVDP*ILSAIVKEASYIHMLVK 487
           NPV +KK+    L  I KE SY+H  +K
Sbjct: 37  NPVTVKKIFDKYLLEINKELSYVHFELK 64


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,740,987
Number of Sequences: 28952
Number of extensions: 165003
Number of successful extensions: 231
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 228
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 230
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1516419560
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)