Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV060423.seq
(657 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_01_0548 + 4099386-4099847,4100435-4101316 168 3e-42
03_01_0547 + 4093196-4093657,4094267-4095148 168 3e-42
03_01_0544 + 4082528-4082989,4083585-4084466 168 3e-42
03_01_0543 + 4076981-4077442,4078145-4079026 168 3e-42
04_04_1015 - 30115377-30115477,30115570-30115615,30116491-301165... 85 4e-17
04_04_1008 - 30054674-30054774,30054867-30054912,30055788-300558... 85 4e-17
04_03_0107 + 11328267-11328276,11329059-11329170,11329862-113299... 69 4e-12
04_04_1593 - 34661670-34661798,34661882-34661989,34662129-346623... 40 0.002
02_04_0462 + 23131433-23132836 38 0.009
02_03_0105 - 15254959-15255216,15256235-15256299,15257080-152572... 36 0.021
03_06_0699 - 35612919-35612989,35613079-35613319,35613506-356135... 35 0.066
03_05_0511 + 25056018-25059107 32 0.46
01_06_0734 + 31569017-31569358,31569832-31569906,31570009-315701... 31 0.61
04_01_0103 + 1082077-1082167,1083037-1085477 31 0.81
02_04_0017 + 18937774-18937864,18938505-18940945 31 0.81
04_04_0640 - 26891552-26891725,26891814-26892326,26892698-268936... 31 1.1
01_06_0548 - 30137139-30139196,30139279-30139691,30139822-30139912 30 1.4
02_01_0432 - 3144560-3144655,3144792-3144832,3145019-3145094,314... 30 1.9
01_06_0662 + 30987187-30987277,30987825-30990214 30 1.9
03_05_0044 + 20203644-20204054,20204695-20204916,20205092-202051... 29 2.5
02_04_0148 - 20198407-20201424 29 3.3
06_03_1457 - 30287185-30287287,30287691-30287759,30288212-302883... 28 5.7
06_01_0325 - 2366193-2366367,2367063-2367122,2367323-2367463,236... 28 7.5
04_04_0214 - 23674270-23676858,23677574-23680843,23680941-236811... 28 7.5
04_03_0106 + 11325172-11325379,11326590-11326640,11326987-113270... 28 7.5
09_04_0267 - 16246512-16246689,16247047-16247183,16247376-162474... 27 9.9
02_05_0490 + 29456825-29457499,29458771-29459057,29460922-294610... 27 9.9
>03_01_0548 + 4099386-4099847,4100435-4101316
Length = 447
Score = 168 bits (409), Expect = 3e-42
Identities = 104/182 (57%), Positives = 117/182 (64%), Gaps = 4/182 (2%)
Frame = +1
Query: 52 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 231
MGKEKTHINIVVIGHVDSGKSTTTGHLIYK GGIDKR IE+FEKEA EM K SFKYAWVL
Sbjct: 1 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVL 60
Query: 232 DKLKAERE---XVSQSILLSGSSKLASTMLPSLXLLDTEISFKNMXXXTSQG*LRCAHS* 402
DKLKAERE + ++ ++K T++ + D KNM TSQ CA
Sbjct: 61 DKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRD---FIKNMITGTSQA--DCAVLI 115
Query: 403 LPVXV-NFEAGISKNGQTREHALLAFTLGVKTAHRRINXNGXSHXNHHTVSPDLREIKKE 579
+ FEAGISK+GQTREHALLAFTLGVK N + + D EI KE
Sbjct: 116 IDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYD--EIVKE 173
Query: 580 VS 585
VS
Sbjct: 174 VS 175
>03_01_0547 + 4093196-4093657,4094267-4095148
Length = 447
Score = 168 bits (409), Expect = 3e-42
Identities = 104/182 (57%), Positives = 117/182 (64%), Gaps = 4/182 (2%)
Frame = +1
Query: 52 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 231
MGKEKTHINIVVIGHVDSGKSTTTGHLIYK GGIDKR IE+FEKEA EM K SFKYAWVL
Sbjct: 1 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVL 60
Query: 232 DKLKAERE---XVSQSILLSGSSKLASTMLPSLXLLDTEISFKNMXXXTSQG*LRCAHS* 402
DKLKAERE + ++ ++K T++ + D KNM TSQ CA
Sbjct: 61 DKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRD---FIKNMITGTSQA--DCAVLI 115
Query: 403 LPVXV-NFEAGISKNGQTREHALLAFTLGVKTAHRRINXNGXSHXNHHTVSPDLREIKKE 579
+ FEAGISK+GQTREHALLAFTLGVK N + + D EI KE
Sbjct: 116 IDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYD--EIVKE 173
Query: 580 VS 585
VS
Sbjct: 174 VS 175
>03_01_0544 + 4082528-4082989,4083585-4084466
Length = 447
Score = 168 bits (409), Expect = 3e-42
Identities = 104/182 (57%), Positives = 117/182 (64%), Gaps = 4/182 (2%)
Frame = +1
Query: 52 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 231
MGKEKTHINIVVIGHVDSGKSTTTGHLIYK GGIDKR IE+FEKEA EM K SFKYAWVL
Sbjct: 1 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVL 60
Query: 232 DKLKAERE---XVSQSILLSGSSKLASTMLPSLXLLDTEISFKNMXXXTSQG*LRCAHS* 402
DKLKAERE + ++ ++K T++ + D KNM TSQ CA
Sbjct: 61 DKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRD---FIKNMITGTSQA--DCAVLI 115
Query: 403 LPVXV-NFEAGISKNGQTREHALLAFTLGVKTAHRRINXNGXSHXNHHTVSPDLREIKKE 579
+ FEAGISK+GQTREHALLAFTLGVK N + + D EI KE
Sbjct: 116 IDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYD--EIVKE 173
Query: 580 VS 585
VS
Sbjct: 174 VS 175
>03_01_0543 + 4076981-4077442,4078145-4079026
Length = 447
Score = 168 bits (409), Expect = 3e-42
Identities = 104/182 (57%), Positives = 117/182 (64%), Gaps = 4/182 (2%)
Frame = +1
Query: 52 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 231
MGKEKTHINIVVIGHVDSGKSTTTGHLIYK GGIDKR IE+FEKEA EM K SFKYAWVL
Sbjct: 1 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVL 60
Query: 232 DKLKAERE---XVSQSILLSGSSKLASTMLPSLXLLDTEISFKNMXXXTSQG*LRCAHS* 402
DKLKAERE + ++ ++K T++ + D KNM TSQ CA
Sbjct: 61 DKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRD---FIKNMITGTSQA--DCAVLI 115
Query: 403 LPVXV-NFEAGISKNGQTREHALLAFTLGVKTAHRRINXNGXSHXNHHTVSPDLREIKKE 579
+ FEAGISK+GQTREHALLAFTLGVK N + + D EI KE
Sbjct: 116 IDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYD--EIVKE 173
Query: 580 VS 585
VS
Sbjct: 174 VS 175
>04_04_1015 -
30115377-30115477,30115570-30115615,30116491-30116590,
30116676-30116771,30119519-30119556,30119623-30119733,
30119820-30119951,30120024-30120263,30120532-30120700,
30120994-30121493,30121581-30121691,30121802-30122133,
30122603-30122737,30122839-30122988,30123809-30123947
Length = 799
Score = 85.4 bits (202), Expect = 4e-17
Identities = 54/150 (36%), Positives = 82/150 (54%), Gaps = 8/150 (5%)
Frame = +1
Query: 67 THINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKA 246
+ +N+ ++GHVDSGKST +G L++ G I K+ + K EKEA+E GKGSF YAW +D+
Sbjct: 246 SQLNLAIVGHVDSGKSTLSGRLLHLLGRISKKDMHKNEKEAKEKGKGSFAYAWAMDESSE 305
Query: 247 EREXVSQSILLSGSSKLASTMLPSLXLLDTEISFKNMXXXTSQG*LRCAHS*LPVXV--- 417
ERE + + ++ + T + LLD+ K+ G + + L V
Sbjct: 306 ERE---RGVTMTVAVAYLETKKYRVVLLDSP-GHKDFVPNMISGATQADAAILVVDACTG 361
Query: 418 NFEAGISKN-----GQTREHALLAFTLGVK 492
+FEAG+ GQT+EHA L + GV+
Sbjct: 362 SFEAGMDGEGGKSVGQTKEHAQLIRSFGVE 391
>04_04_1008 -
30054674-30054774,30054867-30054912,30055788-30055887,
30055973-30056068,30058816-30058853,30058920-30059030,
30059117-30059248,30059321-30059560,30059829-30059997,
30060291-30060790,30060878-30060988,30061099-30061430,
30061900-30062034,30062136-30062285,30063106-30063244
Length = 799
Score = 85.4 bits (202), Expect = 4e-17
Identities = 54/150 (36%), Positives = 82/150 (54%), Gaps = 8/150 (5%)
Frame = +1
Query: 67 THINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKA 246
+ +N+ ++GHVDSGKST +G L++ G I K+ + K EKEA+E GKGSF YAW +D+
Sbjct: 246 SQLNLAIVGHVDSGKSTLSGRLLHLLGRISKKDMHKNEKEAKEKGKGSFAYAWAMDESSE 305
Query: 247 EREXVSQSILLSGSSKLASTMLPSLXLLDTEISFKNMXXXTSQG*LRCAHS*LPVXV--- 417
ERE + + ++ + T + LLD+ K+ G + + L V
Sbjct: 306 ERE---RGVTMTVAVAYLETKKYRVVLLDSP-GHKDFVPNMISGATQADAAILVVDACTG 361
Query: 418 NFEAGISKN-----GQTREHALLAFTLGVK 492
+FEAG+ GQT+EHA L + GV+
Sbjct: 362 SFEAGMDGEGGKSVGQTKEHAQLIRSFGVE 391
>04_03_0107 +
11328267-11328276,11329059-11329170,11329862-11329907,
11330185-11330256,11332292-11332303,11332880-11332942,
11333038-11333192,11333303-11333367,11334645-11334795,
11335230-11335335,11335440-11335575,11336310-11336374,
11337003-11337188,11337298-11337399
Length = 426
Score = 68.5 bits (160), Expect = 4e-12
Identities = 45/136 (33%), Positives = 68/136 (50%), Gaps = 6/136 (4%)
Frame = +1
Query: 100 DSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAEREXVSQSILL 279
D+GKST G +++ G +D RTI+K+EKEA++ + S+ A+++D + ER + +
Sbjct: 4 DAGKSTAGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEER--LKGKTVE 61
Query: 280 SGSSKLASTMLPSLXLLDTEISFKNMXXXTSQG*LRCAHS*LPVXV------NFEAGISK 441
G + T +LD + K + + + V V FE G K
Sbjct: 62 VGRAHF-ETETTRFTILDAPVKMKGHKSYVPNMISGASQADIGVLVISARKGEFETGYEK 120
Query: 442 NGQTREHALLAFTLGV 489
GQTREH LLA TLGV
Sbjct: 121 GGQTREHVLLAKTLGV 136
>04_04_1593 -
34661670-34661798,34661882-34661989,34662129-34662368,
34662614-34662782,34662872-34663362,34663681-34663991,
34664396-34664473,34665034-34665228,34665363-34665524,
34665759-34665840
Length = 654
Score = 39.5 bits (88), Expect = 0.002
Identities = 33/103 (32%), Positives = 50/103 (48%), Gaps = 5/103 (4%)
Frame = +1
Query: 196 MGKGSFKYAWVLDKLKAEREXVSQSILLSGSSKLASTMLPSLXLLDTEISFKNMXXXTSQ 375
+GKGSF YAW +D+ ERE + I ++ T + LLD+ K+
Sbjct: 276 IGKGSFAYAWAMDESADERE---RGITMTVGVAYFDTKNYHVVLLDSP-GHKDFVPNMIS 331
Query: 376 G*LRCAHS*LPVXV---NFEAGISKN--GQTREHALLAFTLGV 489
G + + L + +FEAG+ N GQT+EH+ L + GV
Sbjct: 332 GATQSDAAILVIDASIGSFEAGMGINGIGQTKEHSQLVRSFGV 374
Score = 31.9 bits (69), Expect = 0.46
Identities = 11/28 (39%), Positives = 19/28 (67%)
Frame = +3
Query: 261 ITIDIALWKFETSXYXVTIIXAPGHRDF 344
IT+ + + F+T Y V ++ +PGH+DF
Sbjct: 298 ITMTVGVAYFDTKNYHVVLLDSPGHKDF 325
>02_04_0462 + 23131433-23132836
Length = 467
Score = 37.5 bits (83), Expect = 0.009
Identities = 19/56 (33%), Positives = 29/56 (51%), Gaps = 3/56 (5%)
Frame = +1
Query: 49 KMGKEKTHINIVVIGHVDSGKSTTTGHL---IYKCGGIDKRTIEKFEKEAQEMGKG 207
K + K H+NI IGHVD GK+T T L + GG + ++ + +E +G
Sbjct: 63 KFERTKPHVNIGTIGHVDHGKTTLTAALTMVLASVGGSAPKKYDEIDAAPEERARG 118
>02_03_0105 -
15254959-15255216,15256235-15256299,15257080-15257215,
15257314-15257419,15257642-15257792,15258817-15258881,
15258980-15259134,15259219-15259281,15259846-15259917,
15260364-15260408
Length = 371
Score = 36.3 bits (80), Expect = 0.021
Identities = 16/23 (69%), Positives = 17/23 (73%)
Frame = +1
Query: 421 FEAGISKNGQTREHALLAFTLGV 489
FE G + GQTREH LLA TLGV
Sbjct: 69 FETGYERGGQTREHVLLAKTLGV 91
Score = 27.5 bits (58), Expect = 9.9
Identities = 10/27 (37%), Positives = 16/27 (59%)
Frame = +3
Query: 264 TIDIALWKFETSXYXVTIIXAPGHRDF 344
T+++ FET TI+ APGH+ +
Sbjct: 18 TVEVGRAHFETETTRFTILDAPGHKSY 44
>03_06_0699 -
35612919-35612989,35613079-35613319,35613506-35613568,
35613644-35613709,35614110-35614193,35614685-35614890,
35614977-35615067,35615176-35615280,35615552-35615626,
35615728-35615820,35615914-35615989,35616115-35616305
Length = 453
Score = 34.7 bits (76), Expect = 0.066
Identities = 16/53 (30%), Positives = 28/53 (52%), Gaps = 3/53 (5%)
Frame = +1
Query: 58 KEKTHINIVVIGHVDSGKSTTTG---HLIYKCGGIDKRTIEKFEKEAQEMGKG 207
+ K H+N+ IGHVD GK+T T ++ + G ++ +K +E +G
Sbjct: 63 RTKPHVNVGTIGHVDHGKTTLTAAITKVLAEAGKAKAVAFDEIDKAPEEKARG 115
>03_05_0511 + 25056018-25059107
Length = 1029
Score = 31.9 bits (69), Expect = 0.46
Identities = 11/24 (45%), Positives = 15/24 (62%)
Frame = +1
Query: 76 NIVVIGHVDSGKSTTTGHLIYKCG 147
N ++ HVD GK+T HL+ CG
Sbjct: 12 NTCILAHVDHGKTTLADHLVASCG 35
>01_06_0734 +
31569017-31569358,31569832-31569906,31570009-31570159,
31570716-31570784,31570864-31571036,31571474-31571611,
31571747-31571872,31571951-31572049,31573175-31573298,
31573465-31573528,31573798-31573852,31573951-31574075,
31574228-31574301,31574436-31574485,31574722-31574808,
31574897-31574947,31575025-31575108,31575400-31575498
Length = 661
Score = 31.5 bits (68), Expect = 0.61
Identities = 12/24 (50%), Positives = 16/24 (66%)
Frame = +1
Query: 76 NIVVIGHVDSGKSTTTGHLIYKCG 147
N+ VI HVD GK+T L+ +CG
Sbjct: 66 NVAVIAHVDHGKTTLMDRLLRQCG 89
>04_01_0103 + 1082077-1082167,1083037-1085477
Length = 843
Score = 31.1 bits (67), Expect = 0.81
Identities = 16/42 (38%), Positives = 25/42 (59%), Gaps = 1/42 (2%)
Frame = +1
Query: 25 QFVIRD*PKMGKEKTHI-NIVVIGHVDSGKSTTTGHLIYKCG 147
+F + + ++ +K +I N+ VI HVD GKST T L+ G
Sbjct: 3 KFTVEELRRIMDKKNNIRNMSVIAHVDHGKSTLTDSLVAAAG 44
>02_04_0017 + 18937774-18937864,18938505-18940945
Length = 843
Score = 31.1 bits (67), Expect = 0.81
Identities = 16/42 (38%), Positives = 25/42 (59%), Gaps = 1/42 (2%)
Frame = +1
Query: 25 QFVIRD*PKMGKEKTHI-NIVVIGHVDSGKSTTTGHLIYKCG 147
+F + + ++ +K +I N+ VI HVD GKST T L+ G
Sbjct: 3 KFTVEELRRIMDKKNNIRNMSVIAHVDHGKSTLTDSLVAAAG 44
>04_04_0640 -
26891552-26891725,26891814-26892326,26892698-26893644,
26893778-26894114,26894413-26894462,26895020-26895248
Length = 749
Score = 30.7 bits (66), Expect = 1.1
Identities = 12/26 (46%), Positives = 20/26 (76%)
Frame = +1
Query: 70 HINIVVIGHVDSGKSTTTGHLIYKCG 147
HI+ V++ H+D+GK+TTT ++Y G
Sbjct: 105 HIS-VIMAHIDAGKTTTTERVLYYTG 129
>01_06_0548 - 30137139-30139196,30139279-30139691,30139822-30139912
Length = 853
Score = 30.3 bits (65), Expect = 1.4
Identities = 15/32 (46%), Positives = 18/32 (56%)
Frame = +1
Query: 52 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCG 147
M K+ N+ VI HVD GKST T L+ G
Sbjct: 13 MDKKDNIRNMSVIAHVDHGKSTLTDSLVAAAG 44
>02_01_0432 -
3144560-3144655,3144792-3144832,3145019-3145094,
3145465-3145542,3146121-3146208,3146613-3146686,
3147445-3147579,3147699-3147770,3148239-3148325,
3148418-3148522,3149028-3149085,3149576-3149634,
3149960-3150056,3150217-3150317,3150443-3150487,
3150619-3150681,3151082-3151147,3151286-3151342,
3151570-3151656,3152063-3152239,3152413-3152625
Length = 624
Score = 29.9 bits (64), Expect = 1.9
Identities = 12/33 (36%), Positives = 19/33 (57%)
Frame = +1
Query: 76 NIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEK 174
N +I H+D GKST L+ G + KR +++
Sbjct: 79 NFSIIAHIDHGKSTLADKLLELTGTVQKREMKQ 111
>01_06_0662 + 30987187-30987277,30987825-30990214
Length = 826
Score = 29.9 bits (64), Expect = 1.9
Identities = 14/32 (43%), Positives = 18/32 (56%)
Frame = +1
Query: 52 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCG 147
M K+ N+ V+ HVD GKST T L+ G
Sbjct: 13 MDKKHNIRNMSVVAHVDHGKSTLTDSLVAAAG 44
>03_05_0044 +
20203644-20204054,20204695-20204916,20205092-20205130,
20206275-20206396,20206489-20206639,20207892-20207963,
20208256-20208351,20208861-20208949,20209068-20209134,
20210197-20210235,20210369-20210429,20210572-20210681,
20210766-20210840,20210914-20210982,20213126-20213247,
20214682-20214807,20214897-20215017,20215133-20215233,
20215564-20215624,20216560-20216613,20217585-20217689
Length = 770
Score = 29.5 bits (63), Expect = 2.5
Identities = 12/26 (46%), Positives = 17/26 (65%)
Frame = +1
Query: 76 NIVVIGHVDSGKSTTTGHLIYKCGGI 153
NI + H+DSGK+T T ++Y G I
Sbjct: 70 NIGISAHIDSGKTTLTERVLYYTGRI 95
>02_04_0148 - 20198407-20201424
Length = 1005
Score = 29.1 bits (62), Expect = 3.3
Identities = 14/41 (34%), Positives = 22/41 (53%)
Frame = +1
Query: 76 NIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEM 198
N ++ HVD GK++ HLI G ++R E+ A+ M
Sbjct: 18 NTCILAHVDHGKTSLADHLIAAYGS-ERRVSERMAGSARVM 57
>06_03_1457 -
30287185-30287287,30287691-30287759,30288212-30288351,
30288447-30288641,30288743-30289363,30289688-30290257,
30290332-30293638,30293764-30293863,30293978-30295014,
30295256-30295604,30296299-30296374,30296456-30297022,
30297094-30297238,30298281-30298405,30298491-30298582,
30298646-30298828,30298946-30299058,30299499-30299649,
30299720-30299882
Length = 2701
Score = 28.3 bits (60), Expect = 5.7
Identities = 15/48 (31%), Positives = 23/48 (47%)
Frame = -3
Query: 340 SLCPGASMMVTXYXLVSNFQRAISIVIXTHAQPLVCPIPKHI*RILYP 197
S CPG + +T +V+ FQRA+ + Q +C K I + P
Sbjct: 293 SSCPGYIVAITASDIVNVFQRAVHTSRSSELQVAMCNAYKRIVELCSP 340
>06_01_0325 -
2366193-2366367,2367063-2367122,2367323-2367463,
2368175-2368288,2368444-2368475,2368736-2368793,
2369263-2369434,2369584-2370334,2370743-2371036
Length = 598
Score = 27.9 bits (59), Expect = 7.5
Identities = 13/28 (46%), Positives = 15/28 (53%)
Frame = +1
Query: 76 NIVVIGHVDSGKSTTTGHLIYKCGGIDK 159
N +I HVD GKST L+ G I K
Sbjct: 59 NFSIIAHVDHGKSTLADRLLELTGTIKK 86
>04_04_0214 -
23674270-23676858,23677574-23680843,23680941-23681119,
23681200-23681559,23681645-23682086,23682199-23682332,
23682479-23682680
Length = 2391
Score = 27.9 bits (59), Expect = 7.5
Identities = 9/25 (36%), Positives = 15/25 (60%)
Frame = +2
Query: 197 WVKDPSNMLGYWTN*RLSVSXYHNR 271
W+ PS+ +GYW N +S + N+
Sbjct: 876 WISSPSSGVGYWGNSEMSQRTFFNQ 900
>04_03_0106 +
11325172-11325379,11326590-11326640,11326987-11327073,
11327276-11327373
Length = 147
Score = 27.9 bits (59), Expect = 7.5
Identities = 10/15 (66%), Positives = 12/15 (80%)
Frame = +1
Query: 64 KTHINIVVIGHVDSG 108
K H+N+V IGHVD G
Sbjct: 104 KRHLNVVFIGHVDPG 118
>09_04_0267 -
16246512-16246689,16247047-16247183,16247376-16247471,
16247658-16248579,16249396-16249455,16249860-16250125
Length = 552
Score = 27.5 bits (58), Expect = 9.9
Identities = 17/45 (37%), Positives = 23/45 (51%)
Frame = +1
Query: 220 AWVLDKLKAEREXVSQSILLSGSSKLASTMLPSLXLLDTEISFKN 354
A LDKL+A R I + LA T+L S+ + EI FK+
Sbjct: 409 AKTLDKLQARRSMAKLDIYRKFTIALAVTVLVSIGWIGYEIYFKS 453
>02_05_0490 +
29456825-29457499,29458771-29459057,29460922-29461039,
29461451-29461972,29462058-29462170,29463033-29463053,
29463726-29463960,29464218-29464381,29464695-29464776,
29465077-29465166,29465625-29465858,29466347-29466418,
29466857-29467000,29467573-29467659,29467940-29468098,
29469216-29469476,29469789-29469836
Length = 1103
Score = 27.5 bits (58), Expect = 9.9
Identities = 12/21 (57%), Positives = 14/21 (66%)
Frame = +2
Query: 572 RRKYPSYIKKIGLQPSCCSLS 634
R+ YP Y K GL+PS SLS
Sbjct: 689 RKPYPIYPSKAGLKPSLLSLS 709
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,458,736
Number of Sequences: 37544
Number of extensions: 302829
Number of successful extensions: 738
Number of sequences better than 10.0: 27
Number of HSP's better than 10.0 without gapping: 706
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 725
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1644004708
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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