Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060423.seq
         (657 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_18076| Best HMM Match : GTP_EFTU (HMM E-Value=0.018)                97   1e-20
SB_8918| Best HMM Match : GTP_EFTU (HMM E-Value=1.09301e-43)           59   4e-09
SB_51711| Best HMM Match : GTP_EFTU_D3 (HMM E-Value=0)                 54   1e-07
SB_50386| Best HMM Match : GTP_EFTU (HMM E-Value=1.6e-09)              36   0.038
SB_44740| Best HMM Match : GTP_EFTU (HMM E-Value=0)                    32   0.36 
SB_56013| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.5  
SB_58669| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.4  
SB_6916| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   4.4  
SB_6584| Best HMM Match : Peptidase_A16_N (HMM E-Value=0.01)           29   4.4  
SB_55247| Best HMM Match : 7tm_1 (HMM E-Value=3.9e-10)                 28   7.7  
SB_30491| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.7  

>SB_18076| Best HMM Match : GTP_EFTU (HMM E-Value=0.018)
          Length = 106

 Score = 97.1 bits (231), Expect = 1e-20
 Identities = 44/49 (89%), Positives = 46/49 (93%)
 Frame = +1

Query: 52  MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEM 198
           M KEK HINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKE+ E+
Sbjct: 1   MPKEKIHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKESSEV 49


>SB_8918| Best HMM Match : GTP_EFTU (HMM E-Value=1.09301e-43)
          Length = 547

 Score = 58.8 bits (136), Expect = 4e-09
 Identities = 40/122 (32%), Positives = 58/122 (47%), Gaps = 3/122 (2%)
 Frame = +1

Query: 136 YKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAEREXVSQSILLSGSSKLASTMLP 315
           Y  G +DKRT+EK+E+EA+E  + ++  +W LD  + ER+   +   +        T   
Sbjct: 166 YLTGQVDKRTLEKYEREAKEKNRETWYLSWALDTNQEERD---KGNTVEVGRAAFDTDTK 222

Query: 316 SLXLLDTEISFKNMXXXTSQG*LRCAHS*LPVXV---NFEAGISKNGQTREHALLAFTLG 486
              LLD     K+       G  +     L +      FE G  + GQTREHA+LA T G
Sbjct: 223 HFTLLDAP-GHKSFVPNMISGATQADLGVLVISARKGEFETGFERGGQTREHAMLAKTAG 281

Query: 487 VK 492
           VK
Sbjct: 282 VK 283


>SB_51711| Best HMM Match : GTP_EFTU_D3 (HMM E-Value=0)
          Length = 322

 Score = 53.6 bits (123), Expect = 1e-07
 Identities = 23/28 (82%), Positives = 24/28 (85%)
 Frame = +3

Query: 261 ITIDIALWKFETSXYXVTIIXAPGHRDF 344
           ITIDIALWKFET  Y VT+I APGHRDF
Sbjct: 23  ITIDIALWKFETLKYYVTVIDAPGHRDF 50



 Score = 46.8 bits (106), Expect = 2e-05
 Identities = 20/20 (100%), Positives = 20/20 (100%)
 Frame = +1

Query: 196 MGKGSFKYAWVLDKLKAERE 255
           MGKGSFKYAWVLDKLKAERE
Sbjct: 1   MGKGSFKYAWVLDKLKAERE 20


>SB_50386| Best HMM Match : GTP_EFTU (HMM E-Value=1.6e-09)
          Length = 123

 Score = 35.5 bits (78), Expect = 0.038
 Identities = 19/45 (42%), Positives = 22/45 (48%)
 Frame = +1

Query: 421 FEAGISKNGQTREHALLAFTLGVKTAHRRINXNGXSHXNHHTVSP 555
           FEAG    GQTREHA+L  +LGV      IN        +H   P
Sbjct: 51  FEAGFESGGQTREHAILVRSLGVTQLIVAINKLDMVVLGYHRGKP 95



 Score = 33.1 bits (72), Expect = 0.20
 Identities = 11/26 (42%), Positives = 19/26 (73%)
 Frame = +3

Query: 267 IDIALWKFETSXYXVTIIXAPGHRDF 344
           +D+ L +F+T    +T++ APGH+DF
Sbjct: 1   MDVGLTRFQTKNKVITLMDAPGHKDF 26


>SB_44740| Best HMM Match : GTP_EFTU (HMM E-Value=0)
          Length = 833

 Score = 32.3 bits (70), Expect = 0.36
 Identities = 16/32 (50%), Positives = 19/32 (59%)
 Frame = +1

Query: 52  MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCG 147
           M K+    N+ VI HVD GKST T  L+ K G
Sbjct: 12  MDKKLNIRNMSVIAHVDHGKSTLTDSLVSKAG 43


>SB_56013| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 539

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 13/24 (54%), Positives = 17/24 (70%)
 Frame = +1

Query: 67  THINIVVIGHVDSGKSTTTGHLIY 138
           T I + V+G+V+SGKST  G L Y
Sbjct: 111 TDIRMAVLGNVESGKSTLLGVLTY 134


>SB_58669| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 3038

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 12/48 (25%), Positives = 25/48 (52%)
 Frame = +1

Query: 463 ALLAFTLGVKTAHRRINXNGXSHXNHHTVSPDLREIKKEVSFIHQEDW 606
           ALL F+  ++ AHR ++  G  + +    +  LRE+  ++ +  +  W
Sbjct: 335 ALLEFSRHLEVAHRTLSGMGSDYVSELNYTSTLRELNNKLPYFMKGKW 382


>SB_6916| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2670

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 13/33 (39%), Positives = 17/33 (51%)
 Frame = +1

Query: 76   NIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEK 174
            N  ++ HVD GKST    L+   G I K +  K
Sbjct: 1943 NFSIVAHVDHGKSTLADRLLEVTGTISKSSDNK 1975


>SB_6584| Best HMM Match : Peptidase_A16_N (HMM E-Value=0.01)
          Length = 742

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 12/48 (25%), Positives = 25/48 (52%)
 Frame = +1

Query: 463 ALLAFTLGVKTAHRRINXNGXSHXNHHTVSPDLREIKKEVSFIHQEDW 606
           ALL F+  ++ AHR ++  G  + +    +  LRE+  ++ +  +  W
Sbjct: 520 ALLEFSRHLEVAHRTLSGMGSDYVSELNYTSTLRELNNKLPYFMKGKW 567


>SB_55247| Best HMM Match : 7tm_1 (HMM E-Value=3.9e-10)
          Length = 330

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 12/42 (28%), Positives = 22/42 (52%)
 Frame = +1

Query: 529 HXNHHTVSPDLREIKKEVSFIHQEDWATTQLLFAFVPHFLGW 654
           H N  TVSP++R  +K  ++ H+       ++ +F   +L W
Sbjct: 230 HLNKRTVSPEVRSNQKSDAWKHKTTRMFVTIVVSFAAPYLLW 271


>SB_30491| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1516

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 12/20 (60%), Positives = 15/20 (75%)
 Frame = +2

Query: 236 N*RLSVSXYHNRYCSLEVRN 295
           N +L +S YH+RY SLEV N
Sbjct: 867 NPQLVMSRYHSRYVSLEVEN 886


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,306,748
Number of Sequences: 59808
Number of extensions: 319189
Number of successful extensions: 773
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 715
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 772
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1681430875
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)