Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV060423.seq
(657 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U51994-9|AAO21383.1| 267|Caenorhabditis elegans Elongation fact... 180 6e-46
U51994-6|AAA96068.1| 463|Caenorhabditis elegans Elongation fact... 180 6e-46
U40935-2|AAA81688.1| 463|Caenorhabditis elegans Elongation fact... 180 6e-46
U51994-7|AAO21384.1| 429|Caenorhabditis elegans Elongation fact... 146 2e-35
U51994-8|AAO21382.1| 77|Caenorhabditis elegans Elongation fact... 138 2e-33
Z81098-7|CAI79193.2| 592|Caenorhabditis elegans Hypothetical pr... 97 7e-21
Z81098-6|CAB03180.3| 610|Caenorhabditis elegans Hypothetical pr... 97 7e-21
Z92835-1|CAB07395.2| 532|Caenorhabditis elegans Hypothetical pr... 90 1e-18
D38472-1|BAA07492.1| 495|Caenorhabditis elegans elongation fact... 36 0.019
D38471-1|BAA07491.1| 496|Caenorhabditis elegans elongation fact... 36 0.019
AC024859-25|AAK29979.1| 496|Caenorhabditis elegans Tu elongatio... 36 0.019
AC006714-2|AAK29716.2| 689|Caenorhabditis elegans Hypothetical ... 34 0.077
Z81519-1|CAB04216.1| 750|Caenorhabditis elegans Hypothetical pr... 33 0.18
Z81068-5|CAB02985.1| 852|Caenorhabditis elegans Hypothetical pr... 33 0.24
M86959-1|AAD03339.1| 852|Caenorhabditis elegans elongation fact... 33 0.24
L13200-4|AAA28191.2| 645|Caenorhabditis elegans Hypothetical pr... 32 0.31
L40996-1|AAA86431.1| 593|Caenorhabditis elegans GTP-binding pro... 32 0.41
AF125969-2|AAD14761.1| 613|Caenorhabditis elegans Caenorhabditi... 32 0.41
Z66513-12|CAI46602.1| 492|Caenorhabditis elegans Hypothetical p... 29 2.2
Z66513-11|CAA91332.3| 427|Caenorhabditis elegans Hypothetical p... 29 2.2
Z99709-7|CAB16862.2| 500|Caenorhabditis elegans Hypothetical pr... 29 3.8
Z99709-6|CAB16863.1| 459|Caenorhabditis elegans Hypothetical pr... 29 3.8
U80437-9|AAN84843.1| 439|Caenorhabditis elegans Tu elongation f... 29 3.8
AB010028-1|BAA31345.1| 439|Caenorhabditis elegans mitochondrial... 29 3.8
>U51994-9|AAO21383.1| 267|Caenorhabditis elegans Elongation factor
protein 4, isoformc protein.
Length = 267
Score = 180 bits (439), Expect = 6e-46
Identities = 99/148 (66%), Positives = 104/148 (70%), Gaps = 1/148 (0%)
Frame = +1
Query: 52 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 231
MGKEK HINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL
Sbjct: 1 MGKEKVHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 60
Query: 232 DKLKAEREXVSQSILLSGSSKLASTMLPSLXLLDTEISFKNMXXXTSQG*LRCAHS*LPV 411
DKLKAERE + + A + + KNM TSQ CA +
Sbjct: 61 DKLKAERERGITIDIALWKFETAKYYITIIDAPGHRDFIKNMITGTSQA--DCAVLVVAC 118
Query: 412 XV-NFEAGISKNGQTREHALLAFTLGVK 492
FEAGISKNGQTREHALLA TLGVK
Sbjct: 119 GTGEFEAGISKNGQTREHALLAQTLGVK 146
>U51994-6|AAA96068.1| 463|Caenorhabditis elegans Elongation factor
protein 4, isoforma protein.
Length = 463
Score = 180 bits (439), Expect = 6e-46
Identities = 99/148 (66%), Positives = 104/148 (70%), Gaps = 1/148 (0%)
Frame = +1
Query: 52 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 231
MGKEK HINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL
Sbjct: 1 MGKEKVHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 60
Query: 232 DKLKAEREXVSQSILLSGSSKLASTMLPSLXLLDTEISFKNMXXXTSQG*LRCAHS*LPV 411
DKLKAERE + + A + + KNM TSQ CA +
Sbjct: 61 DKLKAERERGITIDIALWKFETAKYYITIIDAPGHRDFIKNMITGTSQA--DCAVLVVAC 118
Query: 412 XV-NFEAGISKNGQTREHALLAFTLGVK 492
FEAGISKNGQTREHALLA TLGVK
Sbjct: 119 GTGEFEAGISKNGQTREHALLAQTLGVK 146
Score = 66.9 bits (156), Expect = 1e-11
Identities = 51/131 (38%), Positives = 66/131 (50%), Gaps = 1/131 (0%)
Frame = +3
Query: 261 ITIDIALWKFETSXYXVTIIXAPGHRDFXQEHXXXDLSGLIALCSFVAAGXXEFRSX-DL 437
ITIDIALWKFET+ Y +TII APGHRDF + A+ VA G EF +
Sbjct: 71 ITIDIALWKFETAKYYITIIDAPGHRDFIKNMITGTSQADCAVL-VVACGTGEFEAGISK 129
Query: 438 *ERSNP*ACLARFHPRCQNSSS*DKXKWXFPLEPPYSEPRFEGNQEGSILHTSRRLGYNP 617
++ A LA+ Q + +K EPP+SE RF + +++GYNP
Sbjct: 130 NGQTREHALLAQTLGVKQLIVACNKMD---STEPPFSEARFT-EITNEVSGFIKKIGYNP 185
Query: 618 AAVRFRAPFSG 650
AV F P SG
Sbjct: 186 KAVPF-VPISG 195
>U40935-2|AAA81688.1| 463|Caenorhabditis elegans Elongation factor
protein 3 protein.
Length = 463
Score = 180 bits (439), Expect = 6e-46
Identities = 99/148 (66%), Positives = 104/148 (70%), Gaps = 1/148 (0%)
Frame = +1
Query: 52 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 231
MGKEK HINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL
Sbjct: 1 MGKEKVHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 60
Query: 232 DKLKAEREXVSQSILLSGSSKLASTMLPSLXLLDTEISFKNMXXXTSQG*LRCAHS*LPV 411
DKLKAERE + + A + + KNM TSQ CA +
Sbjct: 61 DKLKAERERGITIDIALWKFETAKYYITIIDAPGHRDFIKNMITGTSQA--DCAVLVVAC 118
Query: 412 XV-NFEAGISKNGQTREHALLAFTLGVK 492
FEAGISKNGQTREHALLA TLGVK
Sbjct: 119 GTGEFEAGISKNGQTREHALLAQTLGVK 146
Score = 66.9 bits (156), Expect = 1e-11
Identities = 51/131 (38%), Positives = 66/131 (50%), Gaps = 1/131 (0%)
Frame = +3
Query: 261 ITIDIALWKFETSXYXVTIIXAPGHRDFXQEHXXXDLSGLIALCSFVAAGXXEFRSX-DL 437
ITIDIALWKFET+ Y +TII APGHRDF + A+ VA G EF +
Sbjct: 71 ITIDIALWKFETAKYYITIIDAPGHRDFIKNMITGTSQADCAVL-VVACGTGEFEAGISK 129
Query: 438 *ERSNP*ACLARFHPRCQNSSS*DKXKWXFPLEPPYSEPRFEGNQEGSILHTSRRLGYNP 617
++ A LA+ Q + +K EPP+SE RF + +++GYNP
Sbjct: 130 NGQTREHALLAQTLGVKQLIVACNKMD---STEPPFSEARFT-EITNEVSGFIKKIGYNP 185
Query: 618 AAVRFRAPFSG 650
AV F P SG
Sbjct: 186 KAVPF-VPISG 195
>U51994-7|AAO21384.1| 429|Caenorhabditis elegans Elongation factor
protein 4, isoformd protein.
Length = 429
Score = 146 bits (353), Expect = 2e-35
Identities = 67/68 (98%), Positives = 67/68 (98%)
Frame = +1
Query: 52 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 231
MGKEK HINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL
Sbjct: 1 MGKEKVHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 60
Query: 232 DKLKAERE 255
DKLKAERE
Sbjct: 61 DKLKAERE 68
Score = 54.8 bits (126), Expect = 5e-08
Identities = 23/28 (82%), Positives = 25/28 (89%)
Frame = +3
Query: 261 ITIDIALWKFETSXYXVTIIXAPGHRDF 344
ITIDIALWKFET+ Y +TII APGHRDF
Sbjct: 71 ITIDIALWKFETAKYYITIIDAPGHRDF 98
Score = 31.9 bits (69), Expect = 0.41
Identities = 17/39 (43%), Positives = 22/39 (56%)
Frame = +3
Query: 534 EPPYSEPRFEGNQEGSILHTSRRLGYNPAAVRFRAPFSG 650
EPP+SE RF + +++GYNP AV F P SG
Sbjct: 125 EPPFSEARFT-EITNEVSGFIKKIGYNPKAVPF-VPISG 161
>U51994-8|AAO21382.1| 77|Caenorhabditis elegans Elongation factor
protein 4, isoformb protein.
Length = 77
Score = 138 bits (335), Expect = 2e-33
Identities = 63/67 (94%), Positives = 64/67 (95%)
Frame = +1
Query: 52 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 231
MGKEK HINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL
Sbjct: 1 MGKEKVHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 60
Query: 232 DKLKAER 252
DKLK +
Sbjct: 61 DKLKVTK 67
>Z81098-7|CAI79193.2| 592|Caenorhabditis elegans Hypothetical
protein K07A12.4b protein.
Length = 592
Score = 97.5 bits (232), Expect = 7e-21
Identities = 57/143 (39%), Positives = 76/143 (53%)
Frame = +1
Query: 61 EKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKL 240
+K IN++V+GHVD+GKST GHL++ +D RTI+KF+ EA GK SF YAWVLD+
Sbjct: 167 DKDLINLIVVGHVDAGKSTLMGHLLHDLEVVDSRTIDKFKHEAARNGKASFAYAWVLDET 226
Query: 241 KAEREXVSQSILLSGSSKLASTMLPSLXLLDTEISFKNMXXXTSQG*LRCAHS*LPVXVN 420
+ ERE + S + + + L + NM TSQ
Sbjct: 227 EEERERGVTMDIGRTSFETSHRRIVLLDAPGHKDFISNMITGTSQADAAILVVNATTG-E 285
Query: 421 FEAGISKNGQTREHALLAFTLGV 489
FE G GQT+EHALL +LGV
Sbjct: 286 FETGFENGGQTKEHALLLRSLGV 308
>Z81098-6|CAB03180.3| 610|Caenorhabditis elegans Hypothetical
protein K07A12.4a protein.
Length = 610
Score = 97.5 bits (232), Expect = 7e-21
Identities = 57/143 (39%), Positives = 76/143 (53%)
Frame = +1
Query: 61 EKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKL 240
+K IN++V+GHVD+GKST GHL++ +D RTI+KF+ EA GK SF YAWVLD+
Sbjct: 185 DKDLINLIVVGHVDAGKSTLMGHLLHDLEVVDSRTIDKFKHEAARNGKASFAYAWVLDET 244
Query: 241 KAEREXVSQSILLSGSSKLASTMLPSLXLLDTEISFKNMXXXTSQG*LRCAHS*LPVXVN 420
+ ERE + S + + + L + NM TSQ
Sbjct: 245 EEERERGVTMDIGRTSFETSHRRIVLLDAPGHKDFISNMITGTSQADAAILVVNATTG-E 303
Query: 421 FEAGISKNGQTREHALLAFTLGV 489
FE G GQT+EHALL +LGV
Sbjct: 304 FETGFENGGQTKEHALLLRSLGV 326
>Z92835-1|CAB07395.2| 532|Caenorhabditis elegans Hypothetical
protein H19N07.1 protein.
Length = 532
Score = 89.8 bits (213), Expect = 1e-18
Identities = 53/146 (36%), Positives = 74/146 (50%)
Frame = +1
Query: 55 GKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLD 234
G K HIN+V +GHVD+GKST G L++ G +DKRT+EK+E+EA+E G+ S+ +W +D
Sbjct: 104 GTHKEHINMVFVGHVDAGKSTIGGQLMFLTGMVDKRTLEKYEREAKEKGRESWYLSWCMD 163
Query: 235 KLKAEREXVSQSILLSGSSKLASTMLPSLXLLDTEISFKNMXXXTSQG*LRCAHS*LPVX 414
ERE + + L + NM +Q L
Sbjct: 164 TNDEEREKGKTVEVGRAYFETEKRHFTILDAPGHKSFVPNMIVGANQADLAVLVI-SARR 222
Query: 415 VNFEAGISKNGQTREHALLAFTLGVK 492
FE G + GQTREH++L T GVK
Sbjct: 223 GEFETGFDRGGQTREHSMLVKTAGVK 248
Score = 28.3 bits (60), Expect = 5.1
Identities = 11/27 (40%), Positives = 16/27 (59%)
Frame = +3
Query: 264 TIDIALWKFETSXYXVTIIXAPGHRDF 344
T+++ FET TI+ APGH+ F
Sbjct: 174 TVEVGRAYFETEKRHFTILDAPGHKSF 200
>D38472-1|BAA07492.1| 495|Caenorhabditis elegans elongation factor
Tu homologueprecursor protein.
Length = 495
Score = 36.3 bits (80), Expect = 0.019
Identities = 21/68 (30%), Positives = 34/68 (50%), Gaps = 3/68 (4%)
Frame = +1
Query: 58 KEKTHINIVVIGHVDSGKSTTTG---HLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWV 228
++K H+N+ IGHVD GK+T T ++ G R E + +E +G A+
Sbjct: 45 RDKPHLNVGTIGHVDHGKTTLTSAITKILATSKGAKYRKYEDIDNAPEEKARGITINAFH 104
Query: 229 LDKLKAER 252
L+ A+R
Sbjct: 105 LEYETAKR 112
>D38471-1|BAA07491.1| 496|Caenorhabditis elegans elongation factor
Tu homologueprecursor protein.
Length = 496
Score = 36.3 bits (80), Expect = 0.019
Identities = 21/68 (30%), Positives = 34/68 (50%), Gaps = 3/68 (4%)
Frame = +1
Query: 58 KEKTHINIVVIGHVDSGKSTTTG---HLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWV 228
++K H+N+ IGHVD GK+T T ++ G R E + +E +G A+
Sbjct: 46 RDKPHLNVGTIGHVDHGKTTLTSAITKILATSKGAKYRKYEDIDNAPEEKARGITINAFH 105
Query: 229 LDKLKAER 252
L+ A+R
Sbjct: 106 LEYETAKR 113
>AC024859-25|AAK29979.1| 496|Caenorhabditis elegans Tu elongation
factor (ef-tu), mitochondrialprotein 1 protein.
Length = 496
Score = 36.3 bits (80), Expect = 0.019
Identities = 21/68 (30%), Positives = 34/68 (50%), Gaps = 3/68 (4%)
Frame = +1
Query: 58 KEKTHINIVVIGHVDSGKSTTTG---HLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWV 228
++K H+N+ IGHVD GK+T T ++ G R E + +E +G A+
Sbjct: 46 RDKPHLNVGTIGHVDHGKTTLTSAITKILATSKGAKYRKYEDIDNAPEEKARGITINAFH 105
Query: 229 LDKLKAER 252
L+ A+R
Sbjct: 106 LEYETAKR 113
>AC006714-2|AAK29716.2| 689|Caenorhabditis elegans Hypothetical
protein Y119D3B.14 protein.
Length = 689
Score = 34.3 bits (75), Expect = 0.077
Identities = 15/26 (57%), Positives = 18/26 (69%)
Frame = +1
Query: 76 NIVVIGHVDSGKSTTTGHLIYKCGGI 153
NI VI HVD+GK+T T L+Y G I
Sbjct: 27 NIGVIAHVDAGKTTVTERLLYLAGAI 52
>Z81519-1|CAB04216.1| 750|Caenorhabditis elegans Hypothetical
protein F29C12.4 protein.
Length = 750
Score = 33.1 bits (72), Expect = 0.18
Identities = 13/27 (48%), Positives = 18/27 (66%)
Frame = +1
Query: 76 NIVVIGHVDSGKSTTTGHLIYKCGGID 156
NI + H+DSGK+T T ++Y G ID
Sbjct: 46 NIGISAHIDSGKTTVTERILYYAGRID 72
>Z81068-5|CAB02985.1| 852|Caenorhabditis elegans Hypothetical
protein F25H5.4 protein.
Length = 852
Score = 32.7 bits (71), Expect = 0.24
Identities = 15/32 (46%), Positives = 20/32 (62%)
Frame = +1
Query: 52 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCG 147
M +++ N+ VI HVD GKST T L+ K G
Sbjct: 13 MDRKRNIRNMSVIAHVDHGKSTLTDSLVSKAG 44
>M86959-1|AAD03339.1| 852|Caenorhabditis elegans elongation factor
protein.
Length = 852
Score = 32.7 bits (71), Expect = 0.24
Identities = 15/32 (46%), Positives = 20/32 (62%)
Frame = +1
Query: 52 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCG 147
M +++ N+ VI HVD GKST T L+ K G
Sbjct: 13 MDRKRNIRNMSVIAHVDHGKSTLTDSLVSKAG 44
>L13200-4|AAA28191.2| 645|Caenorhabditis elegans Hypothetical
protein ZK1236.1 protein.
Length = 645
Score = 32.3 bits (70), Expect = 0.31
Identities = 14/42 (33%), Positives = 23/42 (54%), Gaps = 3/42 (7%)
Frame = +1
Query: 76 NIVVIGHVDSGKSTTTGHLIYKCGGI---DKRTIEKFEKEAQ 192
N ++ HVD GKST L+ CG + K+ ++K + E +
Sbjct: 44 NFGIVAHVDHGKSTLADRLLEMCGAVPPGQKQMLDKLQVERE 85
>L40996-1|AAA86431.1| 593|Caenorhabditis elegans GTP-binding
protein protein.
Length = 593
Score = 31.9 bits (69), Expect = 0.41
Identities = 17/46 (36%), Positives = 26/46 (56%)
Frame = +1
Query: 1 GTSSGYYTQFVIRD*PKMGKEKTHINIVVIGHVDSGKSTTTGHLIY 138
G S + ++IRD P K+ + V+G+VD+GKST G L +
Sbjct: 118 GGGSLFTEVWIIRD-PPTEKDFIEARVAVVGNVDAGKSTLLGVLTH 162
>AF125969-2|AAD14761.1| 613|Caenorhabditis elegans Caenorhabditis
gtp-binding proteinprotein 1 protein.
Length = 613
Score = 31.9 bits (69), Expect = 0.41
Identities = 17/46 (36%), Positives = 26/46 (56%)
Frame = +1
Query: 1 GTSSGYYTQFVIRD*PKMGKEKTHINIVVIGHVDSGKSTTTGHLIY 138
G S + ++IRD P K+ + V+G+VD+GKST G L +
Sbjct: 118 GGGSLFTEVWIIRD-PPTEKDFIEARVAVVGNVDAGKSTLLGVLTH 162
>Z66513-12|CAI46602.1| 492|Caenorhabditis elegans Hypothetical
protein F54D5.5b protein.
Length = 492
Score = 29.5 bits (63), Expect = 2.2
Identities = 13/34 (38%), Positives = 19/34 (55%)
Frame = +1
Query: 154 DKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERE 255
+KR ++ EKE + F Y LDK+K ER+
Sbjct: 272 EKRKLKDMEKECNDAKNAMFHYMNQLDKVKKERD 305
>Z66513-11|CAA91332.3| 427|Caenorhabditis elegans Hypothetical
protein F54D5.5a protein.
Length = 427
Score = 29.5 bits (63), Expect = 2.2
Identities = 13/34 (38%), Positives = 19/34 (55%)
Frame = +1
Query: 154 DKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERE 255
+KR ++ EKE + F Y LDK+K ER+
Sbjct: 207 EKRKLKDMEKECNDAKNAMFHYMNQLDKVKKERD 240
>Z99709-7|CAB16862.2| 500|Caenorhabditis elegans Hypothetical
protein C47B2.7b protein.
Length = 500
Score = 28.7 bits (61), Expect = 3.8
Identities = 10/17 (58%), Positives = 15/17 (88%)
Frame = +1
Query: 73 INIVVIGHVDSGKSTTT 123
+N+ ++GHVDSGK+T T
Sbjct: 14 LNLGILGHVDSGKTTLT 30
>Z99709-6|CAB16863.1| 459|Caenorhabditis elegans Hypothetical
protein C47B2.7a protein.
Length = 459
Score = 28.7 bits (61), Expect = 3.8
Identities = 10/17 (58%), Positives = 15/17 (88%)
Frame = +1
Query: 73 INIVVIGHVDSGKSTTT 123
+N+ ++GHVDSGK+T T
Sbjct: 14 LNLGILGHVDSGKTTLT 30
>U80437-9|AAN84843.1| 439|Caenorhabditis elegans Tu elongation
factor (ef-tu), mitochondrialprotein 2 protein.
Length = 439
Score = 28.7 bits (61), Expect = 3.8
Identities = 10/20 (50%), Positives = 15/20 (75%)
Frame = +1
Query: 64 KTHINIVVIGHVDSGKSTTT 123
K ++N+ IGH+D GK+T T
Sbjct: 43 KINVNVGTIGHIDHGKTTLT 62
>AB010028-1|BAA31345.1| 439|Caenorhabditis elegans mitochondrial
elongation factorTu homologue protein.
Length = 439
Score = 28.7 bits (61), Expect = 3.8
Identities = 10/20 (50%), Positives = 15/20 (75%)
Frame = +1
Query: 64 KTHINIVVIGHVDSGKSTTT 123
K ++N+ IGH+D GK+T T
Sbjct: 43 KINVNVGTIGHIDHGKTTLT 62
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,600,128
Number of Sequences: 27780
Number of extensions: 246031
Number of successful extensions: 672
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 620
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 656
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1465835342
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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