Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060422.seq
         (708 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC622.15c |||sequence orphan|Schizosaccharomyces pombe|chr 3||...    31   0.12 
SPBC902.04 |||RNA-binding protein|Schizosaccharomyces pombe|chr ...    29   0.86 
SPAC57A10.08c |||esterase/lipase |Schizosaccharomyces pombe|chr ...    28   1.5  
SPAC2F7.08c |snf5||chromatin remodeling complex subunit Snf5 |Sc...    27   2.6  
SPAC17G8.10c |dma1||mitotic spindle checkpoint protein Dma1|Schi...    27   3.5  
SPCC1827.01c |||DUF1253 family protein|Schizosaccharomyces pombe...    25   8.0  
SPBC1539.05 |cog3||Golgi transport complex subunit Cog3 |Schizos...    25   8.0  
SPBC660.12c |||peptide epimerase |Schizosaccharomyces pombe|chr ...    25   8.0  
SPAC9G1.06c |cyk3||cytokinesis protein Cyk3|Schizosaccharomyces ...    25   8.0  

>SPCC622.15c |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 557

 Score = 31.5 bits (68), Expect = 0.12
 Identities = 14/51 (27%), Positives = 28/51 (54%)
 Frame = +1

Query: 472 RARRVEEDIGEEKSVMRERERRALVRTMPELKDLPEFPRQINYDDDVKSKR 624
           +  ++E ++ E + +  ERE+ A+ R + E    PE P   +   D+KS++
Sbjct: 12  KMEKIEVEMAEFERLGAEREKEAVERIVQEENQNPEVPSNDDASTDIKSRK 62


>SPBC902.04 |||RNA-binding protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 589

 Score = 28.7 bits (61), Expect = 0.86
 Identities = 14/30 (46%), Positives = 18/30 (60%), Gaps = 2/30 (6%)
 Frame = -2

Query: 413 ARLRRHRPFSRNKKPHP--PQPERGLRFSK 330
           + LRRH P +R   P+   PQP  G RFS+
Sbjct: 204 SELRRHSPGNRRFNPYKAYPQPHLGHRFSR 233


>SPAC57A10.08c |||esterase/lipase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 364

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 13/42 (30%), Positives = 21/42 (50%)
 Frame = +1

Query: 43  NWAYSEVHTGVARTCLELKLALNKCNSLDMFFDSCASNDHNL 168
           N+ + E+ TG    C  L+      N +D F D  ++ DHN+
Sbjct: 326 NYTFKEIDTG---HCSMLEQPSEVYNCIDSFLDKFSTTDHNI 364


>SPAC2F7.08c |snf5||chromatin remodeling complex subunit Snf5
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 632

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 12/45 (26%), Positives = 27/45 (60%), Gaps = 1/45 (2%)
 Frame = -3

Query: 406 YDV-IVRFHVIKNLILHNRSAVFDFQNRQRLGNVDAILRVASSTS 275
           YD+ +   H+++N+    ++ + D++ R+   N+  +  V+SSTS
Sbjct: 181 YDIPLHNVHIVQNISKSIQAQINDYEPRKAQSNLSFVSDVSSSTS 225


>SPAC17G8.10c |dma1||mitotic spindle checkpoint protein
           Dma1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 267

 Score = 26.6 bits (56), Expect = 3.5
 Identities = 15/41 (36%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
 Frame = -3

Query: 124 DCCICSGPVLVLDKFWPRPCAPPNTPSYR-*RPTLISYYRY 5
           +CCIC  PVL     +  PC+  ++  Y+  RPTL   + Y
Sbjct: 191 ECCICLMPVLPCQALFVAPCS--HSYHYKCIRPTLNESHPY 229


>SPCC1827.01c |||DUF1253 family protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 652

 Score = 25.4 bits (53), Expect = 8.0
 Identities = 14/61 (22%), Positives = 30/61 (49%)
 Frame = +1

Query: 1   RDIDNKRLGSAVIDNWAYSEVHTGVARTCLELKLALNKCNSLDMFFDSCASNDHNLDLDV 180
           ++ID+  L   ++D+  Y +       T ++++LA    N  D+FF + +   H L   +
Sbjct: 162 KNIDDLGLKQRILDS--YKKQKPSGQLTSMQIELAKAMFNYQDVFFTNMSMKSHKLGTSL 219

Query: 181 I 183
           +
Sbjct: 220 L 220


>SPBC1539.05 |cog3||Golgi transport complex subunit Cog3
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 735

 Score = 25.4 bits (53), Expect = 8.0
 Identities = 12/35 (34%), Positives = 18/35 (51%)
 Frame = -3

Query: 430 QIREPVRGYDVIVRFHVIKNLILHNRSAVFDFQNR 326
           Q+R  V GY      H  + L + N  ++ +FQNR
Sbjct: 624 QLRVAVNGYIETAVIHYTECLSIGNLESITEFQNR 658


>SPBC660.12c |||peptide epimerase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 392

 Score = 25.4 bits (53), Expect = 8.0
 Identities = 11/17 (64%), Positives = 12/17 (70%)
 Frame = +1

Query: 148 ASNDHNLDLDVIDKDLE 198
           A N HNL LDVID  +E
Sbjct: 123 AKNQHNLRLDVIDVGVE 139


>SPAC9G1.06c |cyk3||cytokinesis protein Cyk3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 886

 Score = 25.4 bits (53), Expect = 8.0
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = +1

Query: 142 SCASNDHNLDLDVIDKDLESII 207
           S  +N HN++   IDK + SII
Sbjct: 451 SVGTNIHNMNFSAIDKQIRSII 472


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,537,396
Number of Sequences: 5004
Number of extensions: 47397
Number of successful extensions: 154
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 151
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 154
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 329179816
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)