Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV060422.seq
(708 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
10_08_0154 + 15266430-15266953,15267748-15267820,15267893-152679... 33 0.22
08_01_0511 + 4459685-4459755,4461553-4463653,4463741-4463808,446... 29 2.7
09_01_0075 - 1093514-1093768,1093988-1094127,1094129-1094174 29 3.6
06_01_0027 - 271199-271424,271628-272095,272721-273018,273133-27... 29 3.6
08_02_0456 - 17362080-17364156,17364853-17364942,17372615-173733... 28 6.3
12_02_1100 + 26077776-26077893,26078208-26078434 28 8.4
06_03_0171 + 17498874-17499205,17499344-17499392 28 8.4
05_06_0186 - 26207298-26208548,26208743-26208853,26209286-262095... 28 8.4
>10_08_0154 +
15266430-15266953,15267748-15267820,15267893-15267949,
15268248-15268303,15269584-15269797,15270497-15270538,
15270661-15270735,15270820-15270903,15271880-15271944,
15272436-15272655,15272820-15272908,15273326-15273440,
15273519-15273554
Length = 549
Score = 33.1 bits (72), Expect = 0.22
Identities = 21/64 (32%), Positives = 33/64 (51%)
Frame = +1
Query: 343 RPRSGCGG*GFLLRENGR*RRSRAPVRGFDYGPGREGKGGD*DRARRVEEDIGEEKSVMR 522
R R G GG R++G+ + + RG D R GK G+ DR++ E+D ++ R
Sbjct: 62 RHRGGGGGREHRDRDDGKEKERSSRSRGKDAEKDR-GKDGEKDRSKEAEKDRSRDRDRDR 120
Query: 523 ERER 534
+ ER
Sbjct: 121 DSER 124
>08_01_0511 +
4459685-4459755,4461553-4463653,4463741-4463808,
4465156-4465282,4465379-4465429
Length = 805
Score = 29.5 bits (63), Expect = 2.7
Identities = 18/63 (28%), Positives = 26/63 (41%), Gaps = 1/63 (1%)
Frame = -2
Query: 254 RNCELCIVLKHFV-IPSIIDSKSLSITSKSRL*SFEAHESKNISRLLHLFRASFSSRQVL 78
+N + +FV PS++D K L + + H I LLHL S SR +
Sbjct: 299 KNVRSLTIFGYFVKTPSLLDFKVLRVLDLKDCRKLQNHHLTGIEMLLHLKYLSLGSRYIT 358
Query: 77 ATP 69
P
Sbjct: 359 ELP 361
>09_01_0075 - 1093514-1093768,1093988-1094127,1094129-1094174
Length = 146
Score = 29.1 bits (62), Expect = 3.6
Identities = 20/51 (39%), Positives = 24/51 (47%)
Frame = +1
Query: 340 RRPRSGCGG*GFLLRENGR*RRSRAPVRGFDYGPGREGKGGD*DRARRVEE 492
RR RS C G G R++G R +R R D G G+GG D R E
Sbjct: 35 RRTRSPCDGGGNSWRDSG--RAARRGAREEDACGGHFGRGGMDDHGRLARE 83
>06_01_0027 - 271199-271424,271628-272095,272721-273018,273133-273343,
273427-274124,274921-274969,276059-276112,276244-276275,
276319-276484,276563-276628,276717-276812,276868-276957,
277302-277398,277496-277575,277709-277753,278006-278134,
278593-278722,278888-279222,279918-280053,280149-280328,
280422-280679,280752-281137
Length = 1409
Score = 29.1 bits (62), Expect = 3.6
Identities = 13/50 (26%), Positives = 29/50 (58%)
Frame = +1
Query: 481 RVEEDIGEEKSVMRERERRALVRTMPELKDLPEFPRQINYDDDVKSKRLH 630
R EED+ +E+ + + +R + + E DL + + IN+ + V S++++
Sbjct: 1115 RTEEDLKQEQDEIEDLAKRLCWKKVVEKDDLAIWQKPINHIECVNSRKIY 1164
>08_02_0456 -
17362080-17364156,17364853-17364942,17372615-17373318,
17373421-17373451,17374366-17374448,17374517-17374640,
17376427-17376560
Length = 1080
Score = 28.3 bits (60), Expect = 6.3
Identities = 18/62 (29%), Positives = 24/62 (38%), Gaps = 1/62 (1%)
Frame = -2
Query: 251 NCELCIVLKHFV-IPSIIDSKSLSITSKSRL*SFEAHESKNISRLLHLFRASFSSRQVLA 75
N L + H V +PS++ + L + E H NI LLHL S V
Sbjct: 697 NARLLTIFPHSVKVPSLLQFRRLRVLDFEGCEQLENHHLANIENLLHLKYLSIKDTIVNV 756
Query: 74 TP 69
P
Sbjct: 757 LP 758
>12_02_1100 + 26077776-26077893,26078208-26078434
Length = 114
Score = 27.9 bits (59), Expect = 8.4
Identities = 16/61 (26%), Positives = 25/61 (40%)
Frame = +1
Query: 61 VHTGVARTCLELKLALNKCNSLDMFFDSCASNDHNLDLDVIDKDLESIIDGITKCLSTMQ 240
+H + T L L + C + F C +L L D D ++ DG+ CL +
Sbjct: 42 MHVCLLVTVLRLVIPAGNCQAASSFLSRCVLVLPSLGLQYKDLDGGAVRDGLVFCLMMLV 101
Query: 241 S 243
S
Sbjct: 102 S 102
>06_03_0171 + 17498874-17499205,17499344-17499392
Length = 126
Score = 27.9 bits (59), Expect = 8.4
Identities = 9/18 (50%), Positives = 13/18 (72%)
Frame = -2
Query: 416 GARLRRHRPFSRNKKPHP 363
G ++RR RPF R ++P P
Sbjct: 85 GGKIRRRRPFPRRRRPFP 102
>05_06_0186 -
26207298-26208548,26208743-26208853,26209286-26209507,
26209623-26209658
Length = 539
Score = 27.9 bits (59), Expect = 8.4
Identities = 15/32 (46%), Positives = 18/32 (56%)
Frame = -2
Query: 419 TGARLRRHRPFSRNKKPHPPQPERGLRFSKPS 324
T AR R R N+ PHPP P+ G R KP+
Sbjct: 18 TTARRRPLRLLPGNRTPHPPPPQ-GSRPRKPA 48
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,665,284
Number of Sequences: 37544
Number of extensions: 324910
Number of successful extensions: 1287
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1245
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1286
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1827423340
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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