Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060422.seq
         (708 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_44282| Best HMM Match : No HMM Matches (HMM E-Value=.)              32   0.40 
SB_39416| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.6  
SB_10690| Best HMM Match : Pkinase (HMM E-Value=6.4e-08)               28   6.5  
SB_26017| Best HMM Match : Extensin_2 (HMM E-Value=0.11)               28   6.5  
SB_50855| Best HMM Match : Ras (HMM E-Value=0)                         28   8.5  

>SB_44282| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 358

 Score = 32.3 bits (70), Expect = 0.40
 Identities = 20/51 (39%), Positives = 28/51 (54%)
 Frame = +1

Query: 469 DRARRVEEDIGEEKSVMRERERRALVRTMPELKDLPEFPRQINYDDDVKSK 621
           +RARR E +IG ++S    RER   V    + +D  E  R++ YDD   SK
Sbjct: 15  NRARR-ESEIGSQESRESTRERAKFVYYPKKGEDPDEVARKLVYDDGTASK 64


>SB_39416| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 738

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 13/39 (33%), Positives = 22/39 (56%)
 Frame = +1

Query: 445 REGKGGD*DRARRVEEDIGEEKSVMRERERRALVRTMPE 561
           ++GKGG+  +    EED+  EKS   + E+  + +  PE
Sbjct: 591 KDGKGGEKAKESEKEEDVATEKSEQEKNEKVEIDKPEPE 629


>SB_10690| Best HMM Match : Pkinase (HMM E-Value=6.4e-08)
          Length = 865

 Score = 28.3 bits (60), Expect = 6.5
 Identities = 16/31 (51%), Positives = 18/31 (58%)
 Frame = -2

Query: 410 RLRRHRPFSRNKKPHPPQPERGLRFSKPSTS 318
           R  R R  SR+KKP P  P RG R S+ S S
Sbjct: 153 REHRSRSKSRDKKPKPESPSRG-RSSRRSRS 182


>SB_26017| Best HMM Match : Extensin_2 (HMM E-Value=0.11)
          Length = 1704

 Score = 28.3 bits (60), Expect = 6.5
 Identities = 15/29 (51%), Positives = 16/29 (55%)
 Frame = -1

Query: 309 STPSCASRPRLVSRATSSTQLRALHRAQA 223
           STP   S P   S   SSTQ R  H+AQA
Sbjct: 574 STPMSLSTPPSASSTLSSTQERVNHQAQA 602


>SB_50855| Best HMM Match : Ras (HMM E-Value=0)
          Length = 733

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 25/82 (30%), Positives = 36/82 (43%), Gaps = 6/82 (7%)
 Frame = +1

Query: 436 GPGREGKGGD*DRARRVEEDIGEEKSVMRERERRAL-VRTMP--ELKDLPEFPRQ---IN 597
           G G  G  GD DR+ R ++   + +   +ER R  L  RT P  E K+ P   R      
Sbjct: 534 GGGEFGGRGDRDRSDRYDDHGADRRDAPKERPRLQLQPRTKPPEETKEAPAESRSSAIFG 593

Query: 598 YDDDVKSKRLHR*IQEKIPKGK 663
               V +    R I+EK+ K +
Sbjct: 594 GAKPVDTTSKEREIEEKLAKAR 615


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,255,846
Number of Sequences: 59808
Number of extensions: 375957
Number of successful extensions: 1316
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1204
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1316
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1865706635
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)