Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV060422.seq
(708 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AL162458-1|CAH74052.1| 579|Homo sapiens nuclear receptor coacti... 31 5.3
AL035662-2|CAI42972.1| 579|Homo sapiens nuclear receptor coacti... 31 5.3
AF470686-1|AAO33457.1| 579|Homo sapiens estrogen receptor coact... 31 5.3
AF230533-1|AAG36793.1| 621|Homo sapiens nuclear receptor coacti... 31 5.3
BC028041-1|AAH28041.1| 619|Homo sapiens nuclear RNA export fact... 30 7.1
BC004904-1|AAH04904.1| 619|Homo sapiens nuclear RNA export fact... 30 7.1
AJ132712-1|CAA10753.1| 619|Homo sapiens nuclear RNA export fact... 30 7.1
AF126246-1|AAD20016.1| 619|Homo sapiens tip-associated protein ... 30 7.1
AF112880-1|AAD39102.1| 619|Homo sapiens tip associating protein... 30 7.1
AB209915-1|BAD93152.1| 369|Homo sapiens nuclear RNA export fact... 30 7.1
>AL162458-1|CAH74052.1| 579|Homo sapiens nuclear receptor
coactivator 5 protein.
Length = 579
Score = 30.7 bits (66), Expect = 5.3
Identities = 25/83 (30%), Positives = 39/83 (46%), Gaps = 8/83 (9%)
Frame = +1
Query: 400 RRSRAPVRGFDYGPGREGKGGD*DRARRVEEDIGEEKSVMRERERRAL--------VRTM 555
RR R+P+RG P RE + G R R DI + + + R R L VR +
Sbjct: 25 RRDRSPIRG---SPRREPRDGRNGRDARDSRDIRDPRDLRDHRHSRDLRDHRDSRSVRDV 81
Query: 556 PELKDLPEFPRQINYDDDVKSKR 624
+++DL +F R + D + +R
Sbjct: 82 RDVRDLRDF-RDLRDSRDFRDQR 103
>AL035662-2|CAI42972.1| 579|Homo sapiens nuclear receptor
coactivator 5 protein.
Length = 579
Score = 30.7 bits (66), Expect = 5.3
Identities = 25/83 (30%), Positives = 39/83 (46%), Gaps = 8/83 (9%)
Frame = +1
Query: 400 RRSRAPVRGFDYGPGREGKGGD*DRARRVEEDIGEEKSVMRERERRAL--------VRTM 555
RR R+P+RG P RE + G R R DI + + + R R L VR +
Sbjct: 25 RRDRSPIRG---SPRREPRDGRNGRDARDSRDIRDPRDLRDHRHSRDLRDHRDSRSVRDV 81
Query: 556 PELKDLPEFPRQINYDDDVKSKR 624
+++DL +F R + D + +R
Sbjct: 82 RDVRDLRDF-RDLRDSRDFRDQR 103
>AF470686-1|AAO33457.1| 579|Homo sapiens estrogen receptor
coactivator protein.
Length = 579
Score = 30.7 bits (66), Expect = 5.3
Identities = 25/83 (30%), Positives = 39/83 (46%), Gaps = 8/83 (9%)
Frame = +1
Query: 400 RRSRAPVRGFDYGPGREGKGGD*DRARRVEEDIGEEKSVMRERERRAL--------VRTM 555
RR R+P+RG P RE + G R R DI + + + R R L VR +
Sbjct: 25 RRDRSPIRG---SPRREPRDGRNGRDARDSRDIRDPRDLRDHRHSRDLRDHRDSRSVRDV 81
Query: 556 PELKDLPEFPRQINYDDDVKSKR 624
+++DL +F R + D + +R
Sbjct: 82 RDVRDLRDF-RDLRDSRDFRDQR 103
>AF230533-1|AAG36793.1| 621|Homo sapiens nuclear receptor
coactivator CIA protein.
Length = 621
Score = 30.7 bits (66), Expect = 5.3
Identities = 25/83 (30%), Positives = 39/83 (46%), Gaps = 8/83 (9%)
Frame = +1
Query: 400 RRSRAPVRGFDYGPGREGKGGD*DRARRVEEDIGEEKSVMRERERRAL--------VRTM 555
RR R+P+RG P RE + G R R DI + + + R R L VR +
Sbjct: 67 RRDRSPIRG---SPRREPRDGRNGRDARDSRDIRDPRDLRDHRHSRDLRDHRDSRSVRDV 123
Query: 556 PELKDLPEFPRQINYDDDVKSKR 624
+++DL +F R + D + +R
Sbjct: 124 RDVRDLRDF-RDLRDSRDFRDQR 145
>BC028041-1|AAH28041.1| 619|Homo sapiens nuclear RNA export factor
1 protein.
Length = 619
Score = 30.3 bits (65), Expect = 7.1
Identities = 17/39 (43%), Positives = 24/39 (61%), Gaps = 2/39 (5%)
Frame = +1
Query: 394 R*RRSRAPVRGFDYGPG--REGKGGD*DRARRVEEDIGE 504
R ++ R P R + YG G R G+GG R+ R+EED G+
Sbjct: 21 RKKKGRGPFR-WKYGEGNRRSGRGGSGIRSSRLEEDDGD 58
>BC004904-1|AAH04904.1| 619|Homo sapiens nuclear RNA export factor
1 protein.
Length = 619
Score = 30.3 bits (65), Expect = 7.1
Identities = 17/39 (43%), Positives = 24/39 (61%), Gaps = 2/39 (5%)
Frame = +1
Query: 394 R*RRSRAPVRGFDYGPG--REGKGGD*DRARRVEEDIGE 504
R ++ R P R + YG G R G+GG R+ R+EED G+
Sbjct: 21 RKKKGRGPFR-WKYGEGNRRSGRGGSGIRSSRLEEDDGD 58
>AJ132712-1|CAA10753.1| 619|Homo sapiens nuclear RNA export factor
1 protein.
Length = 619
Score = 30.3 bits (65), Expect = 7.1
Identities = 17/39 (43%), Positives = 24/39 (61%), Gaps = 2/39 (5%)
Frame = +1
Query: 394 R*RRSRAPVRGFDYGPG--REGKGGD*DRARRVEEDIGE 504
R ++ R P R + YG G R G+GG R+ R+EED G+
Sbjct: 21 RKKKGRGPFR-WKYGEGNRRSGRGGSGIRSSRLEEDDGD 58
>AF126246-1|AAD20016.1| 619|Homo sapiens tip-associated protein TAP
protein.
Length = 619
Score = 30.3 bits (65), Expect = 7.1
Identities = 17/39 (43%), Positives = 24/39 (61%), Gaps = 2/39 (5%)
Frame = +1
Query: 394 R*RRSRAPVRGFDYGPG--REGKGGD*DRARRVEEDIGE 504
R ++ R P R + YG G R G+GG R+ R+EED G+
Sbjct: 21 RKKKGRGPFR-WKYGEGNRRSGRGGSGIRSSRLEEDDGD 58
>AF112880-1|AAD39102.1| 619|Homo sapiens tip associating protein
protein.
Length = 619
Score = 30.3 bits (65), Expect = 7.1
Identities = 17/39 (43%), Positives = 24/39 (61%), Gaps = 2/39 (5%)
Frame = +1
Query: 394 R*RRSRAPVRGFDYGPG--REGKGGD*DRARRVEEDIGE 504
R ++ R P R + YG G R G+GG R+ R+EED G+
Sbjct: 21 RKKKGRGPFR-WKYGEGNRRSGRGGSGIRSSRLEEDDGD 58
>AB209915-1|BAD93152.1| 369|Homo sapiens nuclear RNA export factor
1 variant protein.
Length = 369
Score = 30.3 bits (65), Expect = 7.1
Identities = 17/39 (43%), Positives = 24/39 (61%), Gaps = 2/39 (5%)
Frame = +1
Query: 394 R*RRSRAPVRGFDYGPG--REGKGGD*DRARRVEEDIGE 504
R ++ R P R + YG G R G+GG R+ R+EED G+
Sbjct: 34 RKKKGRGPFR-WKYGEGNRRSGRGGSGIRSSRLEEDDGD 71
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 85,562,703
Number of Sequences: 237096
Number of extensions: 1582814
Number of successful extensions: 9012
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 8755
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9002
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 8231208258
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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