Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV060422.seq
(708 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U28738-10|AAK72066.3| 208|Caenorhabditis elegans Sr protein (sp... 29 2.5
U28738-9|AAA68314.3| 208|Caenorhabditis elegans Sr protein (spl... 29 2.5
Z68507-2|CAA92825.1| 475|Caenorhabditis elegans Hypothetical pr... 28 5.7
U23172-15|AAN63408.1| 374|Caenorhabditis elegans Hypothetical p... 28 5.7
U23172-14|AAL02495.1| 165|Caenorhabditis elegans Hypothetical p... 28 5.7
U23172-12|ABH03526.1| 562|Caenorhabditis elegans Hypothetical p... 28 5.7
Z35640-6|CAA84702.2| 1226|Caenorhabditis elegans Hypothetical pr... 28 7.5
Z35639-9|CAA84700.2| 1226|Caenorhabditis elegans Hypothetical pr... 28 7.5
U28738-11|AAK68399.3| 166|Caenorhabditis elegans Sr protein (sp... 28 7.5
AF045640-5|AAM81121.1| 1913|Caenorhabditis elegans Novel channel... 28 7.5
U23139-10|AAN65328.1| 558|Caenorhabditis elegans Biotin protein... 27 9.9
U23139-9|AAN65327.1| 632|Caenorhabditis elegans Biotin protein ... 27 9.9
U23139-8|AAK31491.2| 1051|Caenorhabditis elegans Biotin protein ... 27 9.9
AY601658-1|AAS98223.1| 558|Caenorhabditis elegans biotin protei... 27 9.9
AY601657-1|AAS98222.1| 558|Caenorhabditis elegans biotin protei... 27 9.9
AY601656-1|AAS98221.1| 632|Caenorhabditis elegans biotin protei... 27 9.9
>U28738-10|AAK72066.3| 208|Caenorhabditis elegans Sr protein
(splicing factor) protein5, isoform d protein.
Length = 208
Score = 29.5 bits (63), Expect = 2.5
Identities = 20/59 (33%), Positives = 28/59 (47%), Gaps = 1/59 (1%)
Frame = +1
Query: 400 RRSRAPVRGFDYGPGREGKGGD*DRARRV-EEDIGEEKSVMRERERRALVRTMPELKDL 573
RRSR+P R P R + D R+RR +S +RE RR+ R+ +DL
Sbjct: 89 RRSRSPRRRSRTPPRRRSRSRDRKRSRRSRSRSSSRSRSPVRESRRRSESRSPSPKRDL 147
>U28738-9|AAA68314.3| 208|Caenorhabditis elegans Sr protein
(splicing factor) protein5, isoform a protein.
Length = 208
Score = 29.5 bits (63), Expect = 2.5
Identities = 20/59 (33%), Positives = 28/59 (47%), Gaps = 1/59 (1%)
Frame = +1
Query: 400 RRSRAPVRGFDYGPGREGKGGD*DRARRV-EEDIGEEKSVMRERERRALVRTMPELKDL 573
RRSR+P R P R + D R+RR +S +RE RR+ R+ +DL
Sbjct: 89 RRSRSPRRRSRTPPRRRSRSRDRKRSRRSRSRSSSRSRSPVRESRRRSESRSPSPKRDL 147
>Z68507-2|CAA92825.1| 475|Caenorhabditis elegans Hypothetical
protein M18.3 protein.
Length = 475
Score = 28.3 bits (60), Expect = 5.7
Identities = 9/25 (36%), Positives = 19/25 (76%)
Frame = +2
Query: 632 AKYKRKFQKEKTVQNVQHSCESKLK 706
A+++ +F+KE+ +NV CE++L+
Sbjct: 344 ARHRTRFEKEQIPENVAEECENELR 368
>U23172-15|AAN63408.1| 374|Caenorhabditis elegans Hypothetical
protein F25B5.7d protein.
Length = 374
Score = 28.3 bits (60), Expect = 5.7
Identities = 14/28 (50%), Positives = 15/28 (53%)
Frame = +1
Query: 382 RENGR*RRSRAPVRGFDYGPGREGKGGD 465
R NGR SR D PGRE +GGD
Sbjct: 10 RSNGRDDSSRVAKAENDRKPGRENRGGD 37
>U23172-14|AAL02495.1| 165|Caenorhabditis elegans Hypothetical
protein F25B5.7b protein.
Length = 165
Score = 28.3 bits (60), Expect = 5.7
Identities = 14/28 (50%), Positives = 15/28 (53%)
Frame = +1
Query: 382 RENGR*RRSRAPVRGFDYGPGREGKGGD 465
R NGR SR D PGRE +GGD
Sbjct: 10 RSNGRDDSSRVAKAENDRKPGRENRGGD 37
>U23172-12|ABH03526.1| 562|Caenorhabditis elegans Hypothetical
protein F25B5.7a protein.
Length = 562
Score = 28.3 bits (60), Expect = 5.7
Identities = 14/28 (50%), Positives = 15/28 (53%)
Frame = +1
Query: 382 RENGR*RRSRAPVRGFDYGPGREGKGGD 465
R NGR SR D PGRE +GGD
Sbjct: 10 RSNGRDDSSRVAKAENDRKPGRENRGGD 37
>Z35640-6|CAA84702.2| 1226|Caenorhabditis elegans Hypothetical protein
F43D9.1 protein.
Length = 1226
Score = 27.9 bits (59), Expect = 7.5
Identities = 14/42 (33%), Positives = 21/42 (50%)
Frame = +1
Query: 499 GEEKSVMRERERRALVRTMPELKDLPEFPRQINYDDDVKSKR 624
G ++ R R+RRA+ R +DLP PR +N +R
Sbjct: 1131 GRDRESRRRRQRRAVSRDSEIYEDLPS-PRAVNSSRSTSPRR 1171
>Z35639-9|CAA84700.2| 1226|Caenorhabditis elegans Hypothetical protein
F43D9.1 protein.
Length = 1226
Score = 27.9 bits (59), Expect = 7.5
Identities = 14/42 (33%), Positives = 21/42 (50%)
Frame = +1
Query: 499 GEEKSVMRERERRALVRTMPELKDLPEFPRQINYDDDVKSKR 624
G ++ R R+RRA+ R +DLP PR +N +R
Sbjct: 1131 GRDRESRRRRQRRAVSRDSEIYEDLPS-PRAVNSSRSTSPRR 1171
>U28738-11|AAK68399.3| 166|Caenorhabditis elegans Sr protein
(splicing factor) protein5, isoform b protein.
Length = 166
Score = 27.9 bits (59), Expect = 7.5
Identities = 19/58 (32%), Positives = 27/58 (46%), Gaps = 1/58 (1%)
Frame = +1
Query: 400 RRSRAPVRGFDYGPGREGKGGD*DRARRV-EEDIGEEKSVMRERERRALVRTMPELKD 570
RRSR+P R P R + D R+RR +S +RE RR+ R+ +D
Sbjct: 89 RRSRSPRRRSRTPPRRRSRSRDRKRSRRSRSRSSSRSRSPVRESRRRSESRSPSPKRD 146
>AF045640-5|AAM81121.1| 1913|Caenorhabditis elegans Novel channel
type/putative nematodecalcium channel protein 1, isoform
c protein.
Length = 1913
Score = 27.9 bits (59), Expect = 7.5
Identities = 19/48 (39%), Positives = 26/48 (54%), Gaps = 1/48 (2%)
Frame = +3
Query: 240 ELAVALKKLRGKLVEDATRKMASTLPRR*R-F*KSKTALRLWRMRFFI 380
E+ LKK++ +AT M STLP R R F K T ++ MR F+
Sbjct: 724 EMDEELKKVKQLRAREATTSMRSTLPWRLRVFEKFPTRPQMAAMRKFV 771
>U23139-10|AAN65328.1| 558|Caenorhabditis elegans Biotin protein
ligase protein 1,isoform c protein.
Length = 558
Score = 27.5 bits (58), Expect = 9.9
Identities = 12/32 (37%), Positives = 17/32 (53%)
Frame = +1
Query: 538 ALVRTMPELKDLPEFPRQINYDDDVKSKRLHR 633
ALV L PEFP I + +D+ +R H+
Sbjct: 386 ALVEAARNLSGYPEFPLHIKWPNDLYCERSHK 417
>U23139-9|AAN65327.1| 632|Caenorhabditis elegans Biotin protein
ligase protein 1,isoform b protein.
Length = 632
Score = 27.5 bits (58), Expect = 9.9
Identities = 12/32 (37%), Positives = 17/32 (53%)
Frame = +1
Query: 538 ALVRTMPELKDLPEFPRQINYDDDVKSKRLHR 633
ALV L PEFP I + +D+ +R H+
Sbjct: 460 ALVEAARNLSGYPEFPLHIKWPNDLYCERSHK 491
>U23139-8|AAK31491.2| 1051|Caenorhabditis elegans Biotin protein
ligase protein 1,isoform a protein.
Length = 1051
Score = 27.5 bits (58), Expect = 9.9
Identities = 12/32 (37%), Positives = 17/32 (53%)
Frame = +1
Query: 538 ALVRTMPELKDLPEFPRQINYDDDVKSKRLHR 633
ALV L PEFP I + +D+ +R H+
Sbjct: 879 ALVEAARNLSGYPEFPLHIKWPNDLYCERSHK 910
>AY601658-1|AAS98223.1| 558|Caenorhabditis elegans biotin protein
ligase, holocarboxylasesynthetase (62.5 kD) alternative
variant d protein.
Length = 558
Score = 27.5 bits (58), Expect = 9.9
Identities = 12/32 (37%), Positives = 17/32 (53%)
Frame = +1
Query: 538 ALVRTMPELKDLPEFPRQINYDDDVKSKRLHR 633
ALV L PEFP I + +D+ +R H+
Sbjct: 386 ALVEAARNLSGYPEFPLHIKWPNDLYCERSHK 417
>AY601657-1|AAS98222.1| 558|Caenorhabditis elegans biotin protein
ligase, holocarboxylasesynthetase (62.5 kD) alternative
variant c protein.
Length = 558
Score = 27.5 bits (58), Expect = 9.9
Identities = 12/32 (37%), Positives = 17/32 (53%)
Frame = +1
Query: 538 ALVRTMPELKDLPEFPRQINYDDDVKSKRLHR 633
ALV L PEFP I + +D+ +R H+
Sbjct: 386 ALVEAARNLSGYPEFPLHIKWPNDLYCERSHK 417
>AY601656-1|AAS98221.1| 632|Caenorhabditis elegans biotin protein
ligase, holocarboxylasesynthetase (70.9 kD) alternative
variant b protein.
Length = 632
Score = 27.5 bits (58), Expect = 9.9
Identities = 12/32 (37%), Positives = 17/32 (53%)
Frame = +1
Query: 538 ALVRTMPELKDLPEFPRQINYDDDVKSKRLHR 633
ALV L PEFP I + +D+ +R H+
Sbjct: 460 ALVEAARNLSGYPEFPLHIKWPNDLYCERSHK 491
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,207,665
Number of Sequences: 27780
Number of extensions: 274341
Number of successful extensions: 1062
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 1033
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1060
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1645110168
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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