Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060422.seq
         (708 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ435324-1|ABD92639.1|  152|Apis mellifera OBP3 protein.               25   0.70 
DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholi...    23   2.1  
U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodops...    21   8.7  
DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholi...    21   8.7  
AY703752-1|AAU12748.1|  152|Apis mellifera long-wavelength rhodo...    21   8.7  
AF091732-1|AAD02869.2|  154|Apis mellifera long-wavelength rhodo...    21   8.7  

>DQ435324-1|ABD92639.1|  152|Apis mellifera OBP3 protein.
          Length = 152

 Score = 25.0 bits (52), Expect = 0.70
 Identities = 19/66 (28%), Positives = 30/66 (45%), Gaps = 6/66 (9%)
 Frame = +1

Query: 70  GVARTCLELKLALNKCNSLDMFFDSCASNDHNLDLDVID---KDLESIIDGI---TKCLS 231
           G    CL  +LAL   N  D+       ND ++D+D+ D   K +   +D      KCL+
Sbjct: 54  GCIEACLFHRLALMNDNVFDVSKFDVYLNDTDMDMDLKDSIRKIIRQCVDNAKNEDKCLT 113

Query: 232 TMQSSQ 249
             + S+
Sbjct: 114 AQKFSR 119


>DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholine
           receptor alpha9subunit protein.
          Length = 431

 Score = 23.4 bits (48), Expect = 2.1
 Identities = 11/33 (33%), Positives = 20/33 (60%)
 Frame = -1

Query: 525 LPHNALLFPNILLNSPSTILVAXFSFSPGAVVK 427
           LPHN+   PNILL    ++ ++ F+    A+++
Sbjct: 305 LPHNSTNPPNILLYYRDSLALSVFALILTALLR 337


>U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodopsin
           protein.
          Length = 377

 Score = 21.4 bits (43), Expect = 8.7
 Identities = 8/17 (47%), Positives = 10/17 (58%)
 Frame = +2

Query: 26  GRPLSITGRIRRCTRAW 76
           G+PLSI G + R    W
Sbjct: 160 GKPLSINGALIRIIAIW 176


>DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholine
           receptor beta2subunit protein.
          Length = 427

 Score = 21.4 bits (43), Expect = 8.7
 Identities = 7/33 (21%), Positives = 19/33 (57%)
 Frame = -1

Query: 525 LPHNALLFPNILLNSPSTILVAXFSFSPGAVVK 427
           +P N +  PN+++    ++ +A FS    ++++
Sbjct: 296 IPFNGIQMPNLMVFYEKSLALAAFSLMLTSILR 328


>AY703752-1|AAU12748.1|  152|Apis mellifera long-wavelength
           rhodopsin protein.
          Length = 152

 Score = 21.4 bits (43), Expect = 8.7
 Identities = 8/17 (47%), Positives = 10/17 (58%)
 Frame = +2

Query: 26  GRPLSITGRIRRCTRAW 76
           G+PLSI G + R    W
Sbjct: 126 GKPLSINGALIRIIAIW 142


>AF091732-1|AAD02869.2|  154|Apis mellifera long-wavelength
          rhodopsin protein.
          Length = 154

 Score = 21.4 bits (43), Expect = 8.7
 Identities = 8/17 (47%), Positives = 10/17 (58%)
 Frame = +2

Query: 26 GRPLSITGRIRRCTRAW 76
          G+PLSI G + R    W
Sbjct: 36 GKPLSINGALIRIIAIW 52


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 173,606
Number of Sequences: 438
Number of extensions: 3782
Number of successful extensions: 13
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21804885
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)