Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060422.seq
         (708 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g45300.1 68418.m05561 glycosyl hydrolase family 14 protein si...    31   0.57 
At3g61300.1 68416.m06860 C2 domain-containing protein anthranila...    31   0.75 
At1g31960.1 68414.m03929 hypothetical protein                          31   0.99 
At1g33970.1 68414.m04212 avirulence-responsive protein, putative...    30   1.7  
At1g33170.1 68414.m04096 dehydration-responsive family protein s...    28   5.3  
At5g56220.1 68418.m07016 expressed protein                             28   7.0  

>At5g45300.1 68418.m05561 glycosyl hydrolase family 14 protein
           similar to beta-amylase GI:13560977 from [Castanea
           crenata]
          Length = 689

 Score = 31.5 bits (68), Expect = 0.57
 Identities = 18/57 (31%), Positives = 28/57 (49%), Gaps = 1/57 (1%)
 Frame = +1

Query: 418 VRGFDYGPGREGKGGD*DRARRVEEDIGEEKSVMRERERRALV-RTMPELKDLPEFP 585
           + G   G G  G GG      + E +  +E++ +RER RRA+  R +  L+    FP
Sbjct: 65  IAGIGGGEGSSGGGGGGGGKGKREREKEKERTKLRERHRRAITSRMLAGLRQYGNFP 121


>At3g61300.1 68416.m06860 C2 domain-containing protein anthranilate
           phosphoribosyltransferase (fragment) - Pisum sativum,
           PIR:T06460
          Length = 972

 Score = 31.1 bits (67), Expect = 0.75
 Identities = 20/65 (30%), Positives = 36/65 (55%)
 Frame = +2

Query: 308 DVTETLTVLKIEDRAPVVEDEVFYYVKTDDDVVAAHRFADLTTAPGEKEKXATKIVLGEL 487
           D  + +T+ KI+D +PV  ++ F+ +   +D+  +++F D       K    TK  LG++
Sbjct: 34  DDQKVITMTKIDDSSPVWNEKFFFNISDTEDL--SNQFLDAYVY--NKTSSITKSCLGKI 89

Query: 488 RRILG 502
            RILG
Sbjct: 90  -RILG 93


>At1g31960.1 68414.m03929 hypothetical protein
          Length = 173

 Score = 30.7 bits (66), Expect = 0.99
 Identities = 19/55 (34%), Positives = 30/55 (54%), Gaps = 4/55 (7%)
 Frame = -3

Query: 415 VRGYDVIVRFHVIKNLILHNRSAVFDFQNRQR----LGNVDAILRVASSTSFPRN 263
           V+G + +VRFH ++   +   S V DF N +     + NV  I+R+A ST+   N
Sbjct: 119 VKGSNGVVRFHSVETSNVVTISVVNDFYNNEMGDDGVTNVTGIIRLARSTNGDSN 173


>At1g33970.1 68414.m04212 avirulence-responsive protein, putative /
           avirulence induced gene protein, putative / AIG protein,
           putative similar to SP|P54120 AIG1 protein {Arabidopsis
           thaliana}; contains Pfam profile PF04548: AIG1 family
          Length = 342

 Score = 29.9 bits (64), Expect = 1.7
 Identities = 16/40 (40%), Positives = 25/40 (62%), Gaps = 3/40 (7%)
 Frame = +1

Query: 469 DRARRVEEDIGEEKSVMRERERRA---LVRTMPELKDLPE 579
           D A+R+E+ +GEE++   E E+RA     R+  E+K L E
Sbjct: 281 DTAKRLEQQLGEEQAARLEAEKRANEVQKRSSDEIKKLRE 320


>At1g33170.1 68414.m04096 dehydration-responsive family protein
           similar to early-responsive to dehydration stress ERD3
           protein [Arabidopsis thaliana] GI:15320410; contains
           Pfam profile PF03141: Putative methyltransferase
          Length = 639

 Score = 28.3 bits (60), Expect = 5.3
 Identities = 14/51 (27%), Positives = 28/51 (54%)
 Frame = +1

Query: 481 RVEEDIGEEKSVMRERERRALVRTMPELKDLPEFPRQINYDDDVKSKRLHR 633
           R +ED+ +E+  + +  R    + + E  DL  + + IN+ +  K KR+H+
Sbjct: 347 RSQEDLKQEQDSIEDAARSLCWKKVTEKGDLSIWQKPINHVECNKLKRVHK 397


>At5g56220.1 68418.m07016 expressed protein
          Length = 973

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 17/63 (26%), Positives = 33/63 (52%), Gaps = 2/63 (3%)
 Frame = +1

Query: 91  ELKLALNKCNSLDMFFDSCASNDHNL-DLDVIDKDLESIIDGITKCLS-TMQSSQLR*RS 264
           E++    K N + +F+ +  S    L + + IDK+ +  IDG+ K     +++++   RS
Sbjct: 243 EVRFFAQKKNLIPIFYGTGPSEIMGLLNCNAIDKECKEAIDGLIKSHEFKLEANESNWRS 302

Query: 265 CAG 273
           C G
Sbjct: 303 CVG 305


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,374,418
Number of Sequences: 28952
Number of extensions: 256610
Number of successful extensions: 999
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 955
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 999
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1526202912
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)