Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060421.seq
         (666 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC106.15 |idi1||isopentenyl-diphosphate delta-isomerase Idi1|S...    51   2e-07
SPAC17A2.10c |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    25   7.4  
SPBC1861.06c |mug131||S. pombe specific UPF0300 family protein 4...    25   9.8  
SPAC13G7.05 |||acyl-coA-sterol acyltransferase |Schizosaccharomy...    25   9.8  
SPBC17A3.05c |||DNAJ/DUF1977 DNAJB12 homolog|Schizosaccharomyces...    25   9.8  

>SPBC106.15 |idi1||isopentenyl-diphosphate delta-isomerase
           Idi1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 227

 Score = 50.8 bits (116), Expect = 2e-07
 Identities = 20/44 (45%), Positives = 33/44 (75%)
 Frame = +3

Query: 273 TKRECHKVGPDGDVLLHRAFSVFLFNKRGDMFLQRRSSQKVTYP 404
           TK+ECH +      LLHRAFS+F+F+++  + LQ+R+ +K+T+P
Sbjct: 36  TKKECHLMENINKGLLHRAFSMFIFDEQNRLLLQQRAEEKITFP 79



 Score = 26.6 bits (56), Expect = 3.2
 Identities = 9/22 (40%), Positives = 12/22 (54%)
 Frame = +2

Query: 374 EEIKPKSNISRFYTNACCSHPL 439
           +  + K      +TN CCSHPL
Sbjct: 70  QRAEEKITFPSLWTNTCCSHPL 91


>SPAC17A2.10c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 230

 Score = 25.4 bits (53), Expect = 7.4
 Identities = 19/57 (33%), Positives = 30/57 (52%)
 Frame = -2

Query: 254 SFSSTSRQISLSKASAWANSRPSLSRVAGFTGSEAKNLFSTLRVLHSDLVSFLTNIF 84
           S S   +++SLS +   +  RP  + +  FTGSE  +LF  L +    L+ FL+  F
Sbjct: 76  SLSINPKKLSLSFSFPLSQKRPFPNFLHPFTGSEL-SLFRCLLLFFFFLLFFLSFSF 131


>SPBC1861.06c |mug131||S. pombe specific UPF0300 family protein
           4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 433

 Score = 25.0 bits (52), Expect = 9.8
 Identities = 12/33 (36%), Positives = 19/33 (57%)
 Frame = -2

Query: 164 TGSEAKNLFSTLRVLHSDLVSFLTNIFVCMNFT 66
           T  EA +L S+L   H+D +  L+N+    +FT
Sbjct: 78  TSMEALDLSSSLTTPHADKLLKLSNLIAAKSFT 110


>SPAC13G7.05 |||acyl-coA-sterol acyltransferase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 537

 Score = 25.0 bits (52), Expect = 9.8
 Identities = 11/35 (31%), Positives = 18/35 (51%)
 Frame = -2

Query: 167 FTGSEAKNLFSTLRVLHSDLVSFLTNIFVCMNFTE 63
           F+ S      S +R+LH++    L  +  C+N TE
Sbjct: 219 FSYSHHMGYISEIRILHNEYEKLLKFVRECLNSTE 253


>SPBC17A3.05c |||DNAJ/DUF1977 DNAJB12 homolog|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 403

 Score = 25.0 bits (52), Expect = 9.8
 Identities = 20/54 (37%), Positives = 27/54 (50%), Gaps = 2/54 (3%)
 Frame = -3

Query: 172 QVSQVLKPK-IFSRLLGCSTVILLAF*PTFSYV-*ILLNYTFTLQYNINNNVSR 17
           Q +Q + PK IF +LL    VIL AF   FS+     +N  ++ Q N    V R
Sbjct: 254 QQAQDMPPKSIFYQLLPLIVVILFAFLSNFSWSDSTSVNTRYSFQQNYKYTVPR 307


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,669,707
Number of Sequences: 5004
Number of extensions: 53003
Number of successful extensions: 130
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 126
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 130
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 303841898
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)