Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060421.seq
         (666 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_0796 + 21572131-21572204,21573427-21573482,21573580-215736...    54   8e-08
05_04_0307 + 20066169-20066410,20066803-20066858,20067490-200675...    52   5e-07
02_05_1044 + 33728623-33728768,33728814-33728993,33729446-337295...    30   1.4  
09_06_0268 + 21942591-21942690,21942821-21942904,21943116-219431...    28   5.8  
02_04_0439 - 22950649-22950760,22951035-22951347,22951462-229514...    28   5.8  

>07_03_0796 +
           21572131-21572204,21573427-21573482,21573580-21573671,
           21574103-21574205,21574297-21574434,21574654-21574907
          Length = 238

 Score = 54.4 bits (125), Expect = 8e-08
 Identities = 25/51 (49%), Positives = 36/51 (70%), Gaps = 1/51 (1%)
 Frame = +3

Query: 255 NFIGTATKRECHKVGP-DGDVLLHRAFSVFLFNKRGDMFLQRRSSQKVTYP 404
           N +G  +K  CH +   + + LLHRAFSVFLFN + ++ LQ+RS+ KVT+P
Sbjct: 34  NVVGHESKYNCHLMEKIESENLLHRAFSVFLFNSKYELLLQQRSATKVTFP 84



 Score = 28.7 bits (61), Expect = 4.4
 Identities = 9/11 (81%), Positives = 10/11 (90%)
 Frame = +2

Query: 410 YTNACCSHPLY 442
           +TN CCSHPLY
Sbjct: 87  WTNTCCSHPLY 97


>05_04_0307 +
           20066169-20066410,20066803-20066858,20067490-20067581,
           20068400-20068502,20068623-20068760,20068898-20069148
          Length = 293

 Score = 51.6 bits (118), Expect = 5e-07
 Identities = 25/51 (49%), Positives = 35/51 (68%), Gaps = 1/51 (1%)
 Frame = +3

Query: 255 NFIGTATKRECHKVGP-DGDVLLHRAFSVFLFNKRGDMFLQRRSSQKVTYP 404
           N IG  +K  CH +   +   +LHRAFSVFLFN + ++ LQ+RS+ KVT+P
Sbjct: 90  NVIGHDSKYNCHLMEKINSGHVLHRAFSVFLFNSKYELLLQQRSATKVTFP 140



 Score = 29.5 bits (63), Expect = 2.5
 Identities = 14/30 (46%), Positives = 19/30 (63%), Gaps = 5/30 (16%)
 Frame = +2

Query: 410 YTNACCSHPLY-----IDEKPEEIITAARR 484
           +TN CCSHPLY     I++K   +  AA+R
Sbjct: 143 WTNTCCSHPLYRESELIEDKSLGVRNAAQR 172


>02_05_1044 +
           33728623-33728768,33728814-33728993,33729446-33729523,
           33729834-33729930,33730206-33730339,33730944-33731025,
           33731631-33731717,33731875-33731981,33732674-33732845,
           33733018-33733259,33733482-33733563,33733954-33734019,
           33734040-33734159,33734935-33735012,33735083-33735178,
           33735791-33735897,33736031-33736199,33736402-33736452,
           33736567-33736650,33736946-33737040,33737175-33737265,
           33737342-33737488,33737614-33737676
          Length = 857

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 18/51 (35%), Positives = 30/51 (58%), Gaps = 1/51 (1%)
 Frame = +3

Query: 279 RECHKVGPDGDVLLHRAFSVFLFNKR-GDMFLQRRSSQKVTYPDSTQMLAA 428
           R   +V  DGD   HRA  V+++++  G++ LQRR+  K T+P    + +A
Sbjct: 47  RIASEVHRDGDY--HRAVHVWIYSESTGELLLQRRADCKDTWPGQWDISSA 95


>09_06_0268 +
           21942591-21942690,21942821-21942904,21943116-21943192,
           21943266-21943336,21943646-21943717,21943894-21943965,
           21944057-21944122,21944411-21944476,21944553-21944770,
           21944983-21945254,21945513-21945778,21945879-21945999,
           21946094-21946230,21946362-21946518,21947055-21947189
          Length = 637

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 13/35 (37%), Positives = 17/35 (48%)
 Frame = +1

Query: 463 NHNGSQTXG*TMNWESTRSVGPGTVTVMTRVHYXD 567
           NH+ S     T N+ S R +G GT   + R  Y D
Sbjct: 330 NHSSSDLQAATGNFSSNRQLGQGTTGCVFRAKYAD 364


>02_04_0439 -
           22950649-22950760,22951035-22951347,22951462-22951465,
           22951756-22952114,22952717-22952813
          Length = 294

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 14/44 (31%), Positives = 21/44 (47%), Gaps = 1/44 (2%)
 Frame = -2

Query: 290 MTFSLCSRSY-EVSFSSTSRQISLSKASAWANSRPSLSRVAGFT 162
           M F  CS +Y  +   + +  I   KA  W ++   L R AGF+
Sbjct: 135 MVFKACSEAYFAIDVKTQNCDILCGKAHKWVSNGTELCRSAGFS 178


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,422,810
Number of Sequences: 37544
Number of extensions: 355867
Number of successful extensions: 679
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 666
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 679
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1679486824
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)