Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060421.seq
         (666 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

L15314-5|AAK18968.1|  236|Caenorhabditis elegans Isopentenyl dip...    46   2e-05
AY597336-1|AAT08468.1|  236|Caenorhabditis elegans isopentenyl-d...    46   2e-05
Z81132-11|CAB03426.2|  302|Caenorhabditis elegans Hypothetical p...    29   3.0  
AF078157-8|AAG24076.1|  409|Caenorhabditis elegans Hypothetical ...    29   3.0  
U23511-6|ABD63239.1|  116|Caenorhabditis elegans Hypothetical pr...    28   5.2  
Z81109-4|CAB03250.1|   91|Caenorhabditis elegans Hypothetical pr...    27   9.1  
AL132949-7|CAB61080.1| 1168|Caenorhabditis elegans Hypothetical ...    27   9.1  

>L15314-5|AAK18968.1|  236|Caenorhabditis elegans Isopentenyl
           diphosphate isomeraseprotein 1 protein.
          Length = 236

 Score = 46.4 bits (105), Expect = 2e-05
 Identities = 21/49 (42%), Positives = 32/49 (65%)
 Frame = +3

Query: 261 IGTATKRECHKVGPDGDVLLHRAFSVFLFNKRGDMFLQRRSSQKVTYPD 407
           IG  +KRE H       ++LHRAFSVF F     + +Q+RS++K+T+P+
Sbjct: 45  IGGVSKREAHS---SYQLVLHRAFSVFSFTSDNKLLMQKRSAEKITFPN 90



 Score = 29.9 bits (64), Expect = 1.7
 Identities = 11/31 (35%), Positives = 17/31 (54%)
 Frame = +2

Query: 389 KSNISRFYTNACCSHPLYIDEKPEEIITAAR 481
           K      +TN CCSHPL+  ++ + +  A R
Sbjct: 85  KITFPNLWTNTCCSHPLHTQQEMDGVPGAKR 115


>AY597336-1|AAT08468.1|  236|Caenorhabditis elegans
           isopentenyl-diphosphate isomerase protein.
          Length = 236

 Score = 46.4 bits (105), Expect = 2e-05
 Identities = 21/49 (42%), Positives = 32/49 (65%)
 Frame = +3

Query: 261 IGTATKRECHKVGPDGDVLLHRAFSVFLFNKRGDMFLQRRSSQKVTYPD 407
           IG  +KRE H       ++LHRAFSVF F     + +Q+RS++K+T+P+
Sbjct: 45  IGGVSKREAHS---SYQLVLHRAFSVFSFTSDNKLLMQKRSAEKITFPN 90



 Score = 29.9 bits (64), Expect = 1.7
 Identities = 11/31 (35%), Positives = 17/31 (54%)
 Frame = +2

Query: 389 KSNISRFYTNACCSHPLYIDEKPEEIITAAR 481
           K      +TN CCSHPL+  ++ + +  A R
Sbjct: 85  KITFPNLWTNTCCSHPLHTQQEMDGVPGAKR 115


>Z81132-11|CAB03426.2|  302|Caenorhabditis elegans Hypothetical
           protein T26E4.15 protein.
          Length = 302

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 14/34 (41%), Positives = 20/34 (58%)
 Frame = -2

Query: 176 VAGFTGSEAKNLFSTLRVLHSDLVSFLTNIFVCM 75
           + GFTG    NLF  L  LHS+ +  + NI +C+
Sbjct: 17  IVGFTG----NLFMVLVTLHSNKLRSICNILICV 46


>AF078157-8|AAG24076.1|  409|Caenorhabditis elegans Hypothetical
           protein F25E5.5 protein.
          Length = 409

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 14/48 (29%), Positives = 26/48 (54%), Gaps = 1/48 (2%)
 Frame = -2

Query: 314 HITIRSYF-MTFSLCSRSYEVSFSSTSRQISLSKASAWANSRPSLSRV 174
           ++TIR  F   F+ C ++Y + FS     + + +   + NS+P +S V
Sbjct: 115 NVTIRLQFSFDFATC-KTYNLIFSQLGEDVQMRRVHYYRNSKPRISTV 161


>U23511-6|ABD63239.1|  116|Caenorhabditis elegans Hypothetical
           protein C32D5.14 protein.
          Length = 116

 Score = 28.3 bits (60), Expect = 5.2
 Identities = 12/29 (41%), Positives = 18/29 (62%), Gaps = 2/29 (6%)
 Frame = -2

Query: 128 RVLHSDL--VSFLTNIFVCMNFTELHFYI 48
           R+  SD+  + F T I +C+NF + HF I
Sbjct: 68  RIRRSDINSIKFQTKILICLNFRKGHFLI 96


>Z81109-4|CAB03250.1|   91|Caenorhabditis elegans Hypothetical
           protein R10D12.6 protein.
          Length = 91

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 18/64 (28%), Positives = 26/64 (40%)
 Frame = -2

Query: 509 DSQFMVHPYVWLPL*FPRASHLCTVDGCSKHLCRIGICYFLA*SPLKEHITSLVEEENTE 330
           D+  +V   +WL L  P  +      GC+KH+C   + YF    P   H T        +
Sbjct: 23  DNDRLVMALMWLIL--PPMAVYFKSRGCTKHVCLNVLLYFFLILPSYIHATWYCFVRGRQ 80

Query: 329 CSME 318
           C  E
Sbjct: 81  CEAE 84


>AL132949-7|CAB61080.1| 1168|Caenorhabditis elegans Hypothetical
           protein Y53F4B.9 protein.
          Length = 1168

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 14/53 (26%), Positives = 31/53 (58%), Gaps = 1/53 (1%)
 Frame = +1

Query: 76  IHTKMLVRK-LTRSLWSTLRVEKRFLASEPVKPATLDKDGLELAQAEALDKDI 231
           + +K L  K L + +   +R  ++ +A++ V+P TL+KD     ++E+ +K +
Sbjct: 451 VESKSLESKSLDKEVEPKVRTARKSMAAKSVEPKTLEKDAEPSRKSESPEKTV 503


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,905,380
Number of Sequences: 27780
Number of extensions: 313331
Number of successful extensions: 631
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 616
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 631
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1497472076
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)