Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060420.seq
         (536 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC24B11.12c |||P-type ATPase |Schizosaccharomyces pombe|chr 1|...    25   5.4  
SPAC56F8.16 |esc1||transcription factor Esc1 |Schizosaccharomyce...    25   5.4  
SPAC6G9.10c |sen1||ATP-dependent 5' to 3' DNA/RNA helicase Sen1|...    25   5.4  
SPAC12G12.15 |sif3||Sad1 interacting factor 3|Schizosaccharomyce...    25   5.4  
SPCC18B5.03 |wee1||dual specificity protein kinase Wee1|Schizosa...    25   7.2  
SPAC4F8.14c |hcs1|hcs|3-hydroxy-3-methylglutaryl-CoA synthase|Sc...    25   9.5  
SPBC1289.04c |pob1||Boi family protein|Schizosaccharomyces pombe...    25   9.5  
SPAC29B12.07 |sec16||multidomain vesicle coat component Sec16|Sc...    25   9.5  
SPCC1450.09c |||phospholipase |Schizosaccharomyces pombe|chr 3||...    25   9.5  

>SPAC24B11.12c |||P-type ATPase |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1402

 Score = 25.4 bits (53), Expect = 5.4
 Identities = 8/25 (32%), Positives = 15/25 (60%)
 Frame = -1

Query: 428  ILSGTNARCVYPAYVEVRTYEXAWP 354
            +L GT   C++P ++ + T +  WP
Sbjct: 1263 VLCGTIVSCLFPKFLFMTTQKLFWP 1287


>SPAC56F8.16 |esc1||transcription factor Esc1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 413

 Score = 25.4 bits (53), Expect = 5.4
 Identities = 12/25 (48%), Positives = 14/25 (56%)
 Frame = +2

Query: 305 SAAPETLPPPSAQAHTPARPXHMSA 379
           SAAP +  P SA   T A P H +A
Sbjct: 86  SAAPASSSPTSATLSTAAHPVHTNA 110


>SPAC6G9.10c |sen1||ATP-dependent 5' to 3' DNA/RNA helicase
           Sen1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1687

 Score = 25.4 bits (53), Expect = 5.4
 Identities = 12/34 (35%), Positives = 15/34 (44%)
 Frame = -2

Query: 331 WWQCFWGC*HFCFYKLLXTSSNNTED*VHSQ*KL 230
           +WQC W      F  +   S NN  D V +  KL
Sbjct: 611 YWQCIWNILDLVFSNVARWSLNNPADTVKALMKL 644


>SPAC12G12.15 |sif3||Sad1 interacting factor 3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 510

 Score = 25.4 bits (53), Expect = 5.4
 Identities = 13/32 (40%), Positives = 16/32 (50%)
 Frame = +2

Query: 290 IETKMSAAPETLPPPSAQAHTPARPXHMSAPR 385
           I T++S  P  +PPP     T   P H S PR
Sbjct: 15  INTRLST-PVHIPPPINSESTRITPQHGSPPR 45


>SPCC18B5.03 |wee1||dual specificity protein kinase
           Wee1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 877

 Score = 25.0 bits (52), Expect = 7.2
 Identities = 13/42 (30%), Positives = 20/42 (47%)
 Frame = -3

Query: 522 RAGEPGSIIKTHRNVTASIMPSRRAGLSWIRNPFRNQCTVCL 397
           R   P S +KT  N     + ++R   +  RNPF  + TV +
Sbjct: 465 RFDPPPSAVKTSHNYGLPFLSNQRCPATPTRNPFAFENTVSI 506


>SPAC4F8.14c |hcs1|hcs|3-hydroxy-3-methylglutaryl-CoA
           synthase|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 447

 Score = 24.6 bits (51), Expect = 9.5
 Identities = 10/18 (55%), Positives = 12/18 (66%)
 Frame = +1

Query: 253 SLQCYSRMXIGAYRNKNV 306
           SL+CY +   GAY N NV
Sbjct: 210 SLECYVKALDGAYANYNV 227


>SPBC1289.04c |pob1||Boi family protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 871

 Score = 24.6 bits (51), Expect = 9.5
 Identities = 8/20 (40%), Positives = 16/20 (80%)
 Frame = +2

Query: 296 TKMSAAPETLPPPSAQAHTP 355
           + ++ +PE++P PSA+A +P
Sbjct: 568 SSVTKSPESMPDPSAKASSP 587


>SPAC29B12.07 |sec16||multidomain vesicle coat component
           Sec16|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1995

 Score = 24.6 bits (51), Expect = 9.5
 Identities = 9/17 (52%), Positives = 11/17 (64%)
 Frame = +2

Query: 305 SAAPETLPPPSAQAHTP 355
           S  P +LPPPS Q + P
Sbjct: 639 SNPPRSLPPPSGQVNAP 655


>SPCC1450.09c |||phospholipase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 633

 Score = 24.6 bits (51), Expect = 9.5
 Identities = 11/31 (35%), Positives = 17/31 (54%)
 Frame = -3

Query: 507 GSIIKTHRNVTASIMPSRRAGLSWIRNPFRN 415
           G ++ T  NV + I+P+  A L+   N F N
Sbjct: 342 GFLMGTSSNVFSGILPATNASLTASNNTFNN 372


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,817,284
Number of Sequences: 5004
Number of extensions: 31425
Number of successful extensions: 98
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 95
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 98
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 222442660
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)