Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV060420.seq
(536 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_01_0783 + 5835517-5835861,5835989-5836060,5836140-5836220,583... 37 0.009
02_04_0317 + 21996324-21996681,21996833-21996859,21997299-219982... 32 0.25
04_04_0072 + 22524974-22525310,22526334-22526552,22526826-225275... 31 0.58
02_05_0008 + 24934917-24935229,24936387-24936608,24936876-249375... 31 0.58
10_08_0936 - 21679002-21679800,21679893-21680116,21681174-216813... 28 4.1
04_04_0715 - 27502581-27502759,27503435-27503567 28 4.1
02_02_0503 + 11008475-11008793,11009983-11010140,11011863-110121... 28 4.1
02_05_0454 - 29135223-29135259,29135709-29135742,29136155-291362... 28 5.4
02_01_0003 + 13079-13610,14005-14312,14364-14549,14620-14707,148... 28 5.4
04_03_0904 + 20717005-20718087 27 7.2
04_01_0244 - 3194141-3195091,3195301-3195312 27 7.2
03_01_0455 + 3487354-3488090,3489172-3489255,3489942-3490554,349... 27 7.2
06_03_1004 - 26832638-26833183,26833373-26833569,26833636-268338... 27 9.5
06_01_0125 + 970746-970967,971126-971226,971897-972026,972108-97... 27 9.5
05_03_0318 - 12292969-12293222,12293305-12293898,12297102-122974... 27 9.5
05_03_0034 - 7589272-7589670,7589729-7590007 27 9.5
03_06_0621 - 35147070-35148359,35148499-35148579,35148665-351487... 27 9.5
02_05_1210 - 34954006-34955412 27 9.5
01_01_1067 + 8403584-8404195,8404532-8404693,8404837-8405346,840... 27 9.5
>02_01_0783 +
5835517-5835861,5835989-5836060,5836140-5836220,
5836293-5836490,5836576-5836647,5836803-5836889,
5836986-5837084,5837191-5837274,5837351-5837437,
5837578-5837649,5837912-5838025,5838127-5838214,
5838293-5838388,5838507-5838694
Length = 560
Score = 37.1 bits (82), Expect = 0.009
Identities = 19/35 (54%), Positives = 23/35 (65%), Gaps = 3/35 (8%)
Frame = +2
Query: 413 WFRKGXRIHDNPAL---REGIIDAVTFRCVFIIDP 508
WFRKG R+HDNPAL R G A + VF++DP
Sbjct: 18 WFRKGLRVHDNPALDAARRGGAAARLYP-VFVLDP 51
>02_04_0317 +
21996324-21996681,21996833-21996859,21997299-21998227,
21998317-21999162
Length = 719
Score = 32.3 bits (70), Expect = 0.25
Identities = 17/34 (50%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
Frame = +2
Query: 356 ARPXHMS-APRRTPGKHTVHWFRKGXRIHDNPAL 454
A P MS A G TV WFR+ R+ DNPAL
Sbjct: 3 ASPSSMSGAGAGEAGVRTVVWFRRDLRVEDNPAL 36
>04_04_0072 +
22524974-22525310,22526334-22526552,22526826-22527532,
22527664-22528482
Length = 693
Score = 31.1 bits (67), Expect = 0.58
Identities = 12/20 (60%), Positives = 14/20 (70%)
Frame = +2
Query: 395 GKHTVHWFRKGXRIHDNPAL 454
G TV WFR+ R+ DNPAL
Sbjct: 10 GGRTVVWFRRDLRVEDNPAL 29
>02_05_0008 +
24934917-24935229,24936387-24936608,24936876-24937591,
24937646-24937728,24938448-24938514,24938833-24939228,
24939276-24939318,24939380-24939474,24940287-24940314,
24940636-24940754
Length = 693
Score = 31.1 bits (67), Expect = 0.58
Identities = 17/37 (45%), Positives = 19/37 (51%)
Frame = +2
Query: 398 KHTVHWFRKGXRIHDNPALREGIIDAVTFRCVFIIDP 508
+ TV WFR+ RI DNPAL D VFI P
Sbjct: 5 ERTVVWFRRDLRIDDNPALASAARDGAVLP-VFIWCP 40
>10_08_0936 -
21679002-21679800,21679893-21680116,21681174-21681361,
21681505-21682597
Length = 767
Score = 28.3 bits (60), Expect = 4.1
Identities = 11/23 (47%), Positives = 13/23 (56%)
Frame = +2
Query: 326 PPPSAQAHTPARPXHMSAPRRTP 394
PPP Q+H P P + APR P
Sbjct: 113 PPPPTQSHQPPPPVAVRAPRGGP 135
>04_04_0715 - 27502581-27502759,27503435-27503567
Length = 103
Score = 28.3 bits (60), Expect = 4.1
Identities = 6/9 (66%), Positives = 7/9 (77%)
Frame = -2
Query: 334 WWWQCFWGC 308
WWW+C W C
Sbjct: 2 WWWRCVWQC 10
>02_02_0503 +
11008475-11008793,11009983-11010140,11011863-11012102,
11013502-11013757,11013846-11014057,11014413-11014453,
11014531-11014567
Length = 420
Score = 28.3 bits (60), Expect = 4.1
Identities = 15/30 (50%), Positives = 18/30 (60%)
Frame = +2
Query: 305 SAAPETLPPPSAQAHTPARPXHMSAPRRTP 394
SAAP + PPPS P+ +APRRTP
Sbjct: 25 SAAPASSPPPSP---PPSPAAAAAAPRRTP 51
>02_05_0454 -
29135223-29135259,29135709-29135742,29136155-29136233,
29136330-29136623,29136727-29136861,29136956-29137222,
29137309-29137581
Length = 372
Score = 27.9 bits (59), Expect = 5.4
Identities = 12/38 (31%), Positives = 19/38 (50%)
Frame = +1
Query: 283 GAYRNKNVSSPRNTATTKCSSSHAGQAXSYVRTSTYAG 396
GA + V+SP+++ T S+ AGQ Y+ G
Sbjct: 132 GAKKKAEVASPKDSPATSASTVTAGQKTDYIHVRARRG 169
>02_01_0003 +
13079-13610,14005-14312,14364-14549,14620-14707,
14807-14887,14980-15044,15357-15497,15578-15694,
15995-16237,16326-16383,18127-18224
Length = 638
Score = 27.9 bits (59), Expect = 5.4
Identities = 12/29 (41%), Positives = 17/29 (58%)
Frame = +2
Query: 305 SAAPETLPPPSAQAHTPARPXHMSAPRRT 391
S +P LP P ++H+ P H APR+T
Sbjct: 185 SQSPFLLPSPRYKSHSHRIPSHPIAPRKT 213
>04_03_0904 + 20717005-20718087
Length = 360
Score = 27.5 bits (58), Expect = 7.2
Identities = 11/28 (39%), Positives = 12/28 (42%)
Frame = +2
Query: 314 PETLPPPSAQAHTPARPXHMSAPRRTPG 397
P+ P P TP P H P TPG
Sbjct: 328 PKPTPTPPTYTPTPTPPYHKPPPSYTPG 355
Score = 27.1 bits (57), Expect = 9.5
Identities = 12/37 (32%), Positives = 17/37 (45%)
Frame = +2
Query: 296 TKMSAAPETLPPPSAQAHTPARPXHMSAPRRTPGKHT 406
T S P+ P P+ TP P + P+ TP +T
Sbjct: 174 TPPSYKPQPKPTPTPYTPTPTPPSYKPQPKPTPTPYT 210
>04_01_0244 - 3194141-3195091,3195301-3195312
Length = 320
Score = 27.5 bits (58), Expect = 7.2
Identities = 12/32 (37%), Positives = 16/32 (50%)
Frame = +2
Query: 299 KMSAAPETLPPPSAQAHTPARPXHMSAPRRTP 394
++ AP PPP+A A P P +AP P
Sbjct: 204 RIQLAPRNPPPPAAPAAPPVPPAVPAAPAPAP 235
>03_01_0455 +
3487354-3488090,3489172-3489255,3489942-3490554,
3491356-3491583,3492270-3492437,3492828-3494587,
3494667-3494670
Length = 1197
Score = 27.5 bits (58), Expect = 7.2
Identities = 12/29 (41%), Positives = 17/29 (58%)
Frame = +2
Query: 320 TLPPPSAQAHTPARPXHMSAPRRTPGKHT 406
T+PPPS+QA T P + +R P + T
Sbjct: 40 TMPPPSSQAATSTPPAAATPLQRPPAQAT 68
>06_03_1004 -
26832638-26833183,26833373-26833569,26833636-26833861,
26833943-26834072,26835884-26836188
Length = 467
Score = 27.1 bits (57), Expect = 9.5
Identities = 10/25 (40%), Positives = 15/25 (60%)
Frame = +2
Query: 284 ELIETKMSAAPETLPPPSAQAHTPA 358
+ +E S +P+ + PPS Q HT A
Sbjct: 292 KFLELNNSTSPDRMEPPSTQGHTVA 316
>06_01_0125 +
970746-970967,971126-971226,971897-972026,972108-972333,
972400-972502,972519-972594,972710-973333
Length = 493
Score = 27.1 bits (57), Expect = 9.5
Identities = 10/25 (40%), Positives = 15/25 (60%)
Frame = +2
Query: 284 ELIETKMSAAPETLPPPSAQAHTPA 358
+ +E S +P+ + PPS Q HT A
Sbjct: 318 KFLELNNSTSPDRMEPPSTQGHTVA 342
>05_03_0318 -
12292969-12293222,12293305-12293898,12297102-12297415,
12297712-12297893,12297960-12298187,12298234-12298698,
12299393-12299443
Length = 695
Score = 27.1 bits (57), Expect = 9.5
Identities = 19/70 (27%), Positives = 29/70 (41%), Gaps = 1/70 (1%)
Frame = -2
Query: 526 LKSWRTWIYYKDASECDSVYNALXKG-GVIVDSXSFPEPMHGVFTRRTSRCGHMXRPGRR 350
++ W I + EC S+ N + KG GVI D +F GH+ + G
Sbjct: 511 IRQWLESIKFSAPVECTSLINRIAKGLGVISDQIAFISAASPCIDENYLVQGHILKHGVD 570
Query: 349 VSLSTWWWQC 320
SL ++ C
Sbjct: 571 GSLIYFFPGC 580
>05_03_0034 - 7589272-7589670,7589729-7590007
Length = 225
Score = 27.1 bits (57), Expect = 9.5
Identities = 17/61 (27%), Positives = 23/61 (37%), Gaps = 6/61 (9%)
Frame = -2
Query: 526 LKSWRTWIYYKDASECDSVYNALX------KGGVIVDSXSFPEPMHGVFTRRTSRCGHMX 365
+ WR + ++D E + + KGGVI S S HG RCG
Sbjct: 163 MAKWRRRVGFQDCRETEENVGGIQDCREVEKGGVISGSSSMVHSHHGGIWPTARRCGQQL 222
Query: 364 R 362
R
Sbjct: 223 R 223
>03_06_0621 -
35147070-35148359,35148499-35148579,35148665-35148741,
35148792-35149298,35149405-35150278
Length = 942
Score = 27.1 bits (57), Expect = 9.5
Identities = 17/53 (32%), Positives = 26/53 (49%), Gaps = 1/53 (1%)
Frame = -2
Query: 463 ALXKGGVIVDSXSFPEPM-HGVFTRRTSRCGHMXRPGRRVSLSTWWWQCFWGC 308
+L G ++ S + PM HGV T S PGR +++ T+ + F GC
Sbjct: 79 SLYPSGTVLASIMYTIPMIHGVDTYNLS----WDSPGRNLNVETYNYLAFLGC 127
>02_05_1210 - 34954006-34955412
Length = 468
Score = 27.1 bits (57), Expect = 9.5
Identities = 11/32 (34%), Positives = 16/32 (50%)
Frame = +2
Query: 287 LIETKMSAAPETLPPPSAQAHTPARPXHMSAP 382
++ T + P+ PPP HTP P +S P
Sbjct: 13 VLATGAAQGPKRKPPPKRFVHTPIPPSILSDP 44
>01_01_1067 +
8403584-8404195,8404532-8404693,8404837-8405346,
8405434-8405493,8405721-8406137,8406576-8407100
Length = 761
Score = 27.1 bits (57), Expect = 9.5
Identities = 12/25 (48%), Positives = 14/25 (56%)
Frame = +2
Query: 290 IETKMSAAPETLPPPSAQAHTPARP 364
I SAAP+ PPP AQ H +P
Sbjct: 10 ISPAASAAPQPPPPPVAQRHHQQQP 34
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,769,173
Number of Sequences: 37544
Number of extensions: 212087
Number of successful extensions: 966
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 901
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 964
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1186491600
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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