Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV060420.seq
(536 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_36192| Best HMM Match : No HMM Matches (HMM E-Value=.) 58 5e-09
SB_10209| Best HMM Match : No HMM Matches (HMM E-Value=.) 51 7e-07
SB_49633| Best HMM Match : FAD_binding_7 (HMM E-Value=0) 47 1e-05
SB_24027| Best HMM Match : FAD_binding_7 (HMM E-Value=0) 46 1e-05
SB_24028| Best HMM Match : DNA_photolyase (HMM E-Value=1.3e-39) 45 3e-05
SB_38092| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.45
SB_32010| Best HMM Match : Ada_Zn_binding (HMM E-Value=5.2) 30 1.4
SB_32712| Best HMM Match : PAN (HMM E-Value=0.18) 28 5.6
SB_1943| Best HMM Match : Vicilin_N (HMM E-Value=0.67) 28 5.6
SB_30672| Best HMM Match : Colipase (HMM E-Value=6.5) 28 5.6
SB_16484| Best HMM Match : MSG (HMM E-Value=0.24) 28 5.6
SB_55818| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.7
SB_39810| Best HMM Match : Pam16 (HMM E-Value=8.3) 27 9.7
SB_16235| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.7
SB_2841| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.7
SB_12072| Best HMM Match : rve (HMM E-Value=2.8e-17) 27 9.7
>SB_36192| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 563
Score = 58.0 bits (134), Expect = 5e-09
Identities = 23/40 (57%), Positives = 31/40 (77%)
Frame = +2
Query: 401 HTVHWFRKGXRIHDNPALREGIIDAVTFRCVFIIDPGSPA 520
H++HW RKG RIHDNPALR+ +++ TFR V+I+D S A
Sbjct: 19 HSIHWLRKGLRIHDNPALRDAVLNWGTFRVVYILDTKSVA 58
>SB_10209| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 798
Score = 50.8 bits (116), Expect = 7e-07
Identities = 19/40 (47%), Positives = 28/40 (70%)
Frame = +2
Query: 395 GKHTVHWFRKGXRIHDNPALREGIIDAVTFRCVFIIDPGS 514
G + +HWFRK R+HDNPAL +G+ + F V+I+DP +
Sbjct: 351 GNNVIHWFRKDLRLHDNPALLDGLKNCRAFYGVYILDPNN 390
>SB_49633| Best HMM Match : FAD_binding_7 (HMM E-Value=0)
Length = 1291
Score = 46.8 bits (106), Expect = 1e-05
Identities = 20/46 (43%), Positives = 31/46 (67%)
Frame = +2
Query: 371 MSAPRRTPGKHTVHWFRKGXRIHDNPALREGIIDAVTFRCVFIIDP 508
MS P +T +T+HWFRK R+HDNP+L + + + +F V+ +DP
Sbjct: 710 MSLPPKT--HNTMHWFRKDLRLHDNPSLLKALSGSQSFYGVYFLDP 753
Score = 42.3 bits (95), Expect = 2e-04
Identities = 16/37 (43%), Positives = 25/37 (67%)
Frame = +2
Query: 395 GKHTVHWFRKGXRIHDNPALREGIIDAVTFRCVFIID 505
G +VHWFRK R+HDNP+L + + TF ++++D
Sbjct: 223 GCTSVHWFRKDLRLHDNPSLLASLDNCSTFFPIYVLD 259
>SB_24027| Best HMM Match : FAD_binding_7 (HMM E-Value=0)
Length = 1074
Score = 46.4 bits (105), Expect = 1e-05
Identities = 19/40 (47%), Positives = 25/40 (62%)
Frame = +2
Query: 395 GKHTVHWFRKGXRIHDNPALREGIIDAVTFRCVFIIDPGS 514
G ++HWFRK R+HDNPAL E + F V+ +DP S
Sbjct: 196 GISSMHWFRKDLRLHDNPALLESFKNCQAFYGVYFLDPAS 235
Score = 42.3 bits (95), Expect = 2e-04
Identities = 16/37 (43%), Positives = 25/37 (67%)
Frame = +2
Query: 395 GKHTVHWFRKGXRIHDNPALREGIIDAVTFRCVFIID 505
G +VHWFRK R+HDNP+L + + TF ++++D
Sbjct: 693 GCTSVHWFRKDLRLHDNPSLLASLDNCSTFFPIYVLD 729
>SB_24028| Best HMM Match : DNA_photolyase (HMM E-Value=1.3e-39)
Length = 432
Score = 45.2 bits (102), Expect = 3e-05
Identities = 19/43 (44%), Positives = 29/43 (67%), Gaps = 1/43 (2%)
Frame = +2
Query: 398 KHT-VHWFRKGXRIHDNPALREGIIDAVTFRCVFIIDPGSPAL 523
+HT HWFRK R+HDNPAL++ + +A F VF++ P++
Sbjct: 5 RHTSCHWFRKDLRLHDNPALKDALDNADCFYGVFVLSNFHPSI 47
>SB_38092| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 127
Score = 31.5 bits (68), Expect = 0.45
Identities = 15/61 (24%), Positives = 29/61 (47%)
Frame = +2
Query: 299 KMSAAPETLPPPSAQAHTPARPXHMSAPRRTPGKHTVHWFRKGXRIHDNPALREGIIDAV 478
++ A P+ P + TP+ H P+ +PG + WFR+ I + + ++A+
Sbjct: 15 EVPAKPDQRPSSAVLTKTPSDHEHKETPK-SPGPLSKRWFRQQFGIRNEDTRKASKVEAM 73
Query: 479 T 481
T
Sbjct: 74 T 74
>SB_32010| Best HMM Match : Ada_Zn_binding (HMM E-Value=5.2)
Length = 607
Score = 29.9 bits (64), Expect = 1.4
Identities = 15/31 (48%), Positives = 16/31 (51%), Gaps = 1/31 (3%)
Frame = +2
Query: 317 ETLPPPSAQAHTPARPXHMS-APRRTPGKHT 406
ETL PPSA P P H APR +HT
Sbjct: 550 ETLLPPSATVSWPGTPGHRGCAPRNRATRHT 580
>SB_32712| Best HMM Match : PAN (HMM E-Value=0.18)
Length = 542
Score = 27.9 bits (59), Expect = 5.6
Identities = 15/37 (40%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
Frame = -3
Query: 495 KTHRNVTASIMPSRRAGL-SWIRNPFRNQCTVCLPGV 388
KT R + S +RR G SW+ N R+ CTV G+
Sbjct: 231 KTMRALLMSFGNTRRDGTDSWVSNQCRHSCTVTYGGL 267
>SB_1943| Best HMM Match : Vicilin_N (HMM E-Value=0.67)
Length = 695
Score = 27.9 bits (59), Expect = 5.6
Identities = 12/41 (29%), Positives = 16/41 (39%)
Frame = +1
Query: 232 AFTGYELSLQCYSRMXIGAYRNKNVSSPRNTATTKCSSSHA 354
+FT Y+ CY + N + PRN T C A
Sbjct: 348 SFTSYDNERHCYGKGVSSCKEKLNHNCPRNEGITNCYKDEA 388
>SB_30672| Best HMM Match : Colipase (HMM E-Value=6.5)
Length = 305
Score = 27.9 bits (59), Expect = 5.6
Identities = 15/47 (31%), Positives = 21/47 (44%)
Frame = +1
Query: 247 ELSLQCYSRMXIGAYRNKNVSSPRNTATTKCSSSHAGQAXSYVRTST 387
EL + CY IG Y N + +T + +H G+ Y R ST
Sbjct: 113 ELEVTCYQTTSIGCYHNLAIYG--STRCKPVAYAHNGELRKYKRHST 157
>SB_16484| Best HMM Match : MSG (HMM E-Value=0.24)
Length = 661
Score = 27.9 bits (59), Expect = 5.6
Identities = 12/41 (29%), Positives = 16/41 (39%)
Frame = +1
Query: 232 AFTGYELSLQCYSRMXIGAYRNKNVSSPRNTATTKCSSSHA 354
+FT Y+ CY + N + PRN T C A
Sbjct: 250 SFTSYDNERHCYGKGVSSCKEKLNHNCPRNEGITNCYKDEA 290
>SB_55818| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 145
Score = 27.1 bits (57), Expect = 9.7
Identities = 12/32 (37%), Positives = 16/32 (50%)
Frame = +2
Query: 305 SAAPETLPPPSAQAHTPARPXHMSAPRRTPGK 400
+AAP PPP+A P P + AP P +
Sbjct: 69 AAAPAAPPPPAAPPAAPPPPPPLPAPPPPPAQ 100
>SB_39810| Best HMM Match : Pam16 (HMM E-Value=8.3)
Length = 177
Score = 27.1 bits (57), Expect = 9.7
Identities = 11/23 (47%), Positives = 12/23 (52%)
Frame = +2
Query: 332 PSAQAHTPARPXHMSAPRRTPGK 400
P + H PARP PRRT K
Sbjct: 140 PRGEVHHPARPFSADGPRRTVPK 162
>SB_16235| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 4072
Score = 27.1 bits (57), Expect = 9.7
Identities = 14/33 (42%), Positives = 18/33 (54%), Gaps = 2/33 (6%)
Frame = +2
Query: 299 KMSAAPETLPPP--SAQAHTPARPXHMSAPRRT 391
K +A PET PP +A+ T P SAP+ T
Sbjct: 1867 KTTAVPETTTPPETTAKPETTGAPETTSAPKTT 1899
Score = 27.1 bits (57), Expect = 9.7
Identities = 14/33 (42%), Positives = 18/33 (54%), Gaps = 2/33 (6%)
Frame = +2
Query: 299 KMSAAPETLPPP--SAQAHTPARPXHMSAPRRT 391
K +A PET PP +A+ T P SAP+ T
Sbjct: 2341 KTTAVPETTTPPETTAKPETTGAPETTSAPKTT 2373
>SB_2841| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 3297
Score = 27.1 bits (57), Expect = 9.7
Identities = 14/33 (42%), Positives = 18/33 (54%), Gaps = 2/33 (6%)
Frame = +2
Query: 299 KMSAAPETLPPP--SAQAHTPARPXHMSAPRRT 391
K +A PET PP +A+ T P SAP+ T
Sbjct: 2884 KTTAVPETTTPPETTAKPETTGAPETTSAPKTT 2916
Score = 27.1 bits (57), Expect = 9.7
Identities = 14/33 (42%), Positives = 18/33 (54%), Gaps = 2/33 (6%)
Frame = +2
Query: 299 KMSAAPETLPPP--SAQAHTPARPXHMSAPRRT 391
K +A PET PP +A+ T P SAP+ T
Sbjct: 3022 KTTAVPETTTPPETTAKPETTGAPETTSAPKTT 3054
>SB_12072| Best HMM Match : rve (HMM E-Value=2.8e-17)
Length = 1693
Score = 27.1 bits (57), Expect = 9.7
Identities = 11/23 (47%), Positives = 12/23 (52%)
Frame = +2
Query: 332 PSAQAHTPARPXHMSAPRRTPGK 400
P + H PARP PRRT K
Sbjct: 629 PRGEVHHPARPFSADGPRRTVPK 651
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,954,872
Number of Sequences: 59808
Number of extensions: 247509
Number of successful extensions: 783
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 701
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 778
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1215643300
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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