Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV060420.seq
(536 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
EF015898-1|ABM64209.1| 586|Homo sapiens photolyase-like cryptoc... 61 3e-09
D84657-1|BAA12710.1| 586|Homo sapiens photolyase homolog protein. 61 3e-09
D83702-1|BAA12068.1| 586|Homo sapiens photolyase protein. 61 3e-09
BC030519-1|AAH30519.1| 586|Homo sapiens cryptochrome 1 (photoly... 61 3e-09
EF015899-1|ABM64210.1| 593|Homo sapiens photolyase-like cryptoc... 55 2e-07
BC041814-1|AAH41814.1| 593|Homo sapiens cryptochrome 2 (photoly... 55 2e-07
AB014558-1|BAA31633.1| 589|Homo sapiens KIAA0658 protein protein. 55 2e-07
BC015937-1|AAH15937.1| 479|Homo sapiens poly(A) binding protein... 31 2.0
AF013758-1|AAC39697.2| 479|Homo sapiens polyadenylate binding p... 31 2.0
AJ012793-1|CAB42642.1| 576|Homo sapiens lymphocyte adaptor prot... 31 2.6
AF055581-1|AAC71695.1| 575|Homo sapiens adaptor protein Lnk pro... 31 2.6
L32832-1|AAC14462.1| 3703|Homo sapiens zinc finger homeodomain p... 30 6.0
D10250-1|BAA01095.1| 2783|Homo sapiens alpha-fetoprotein enhance... 30 6.0
AC004943-1|AAC79153.1| 2553|Homo sapiens unknown protein. 30 6.0
BC044597-1|AAH44597.1| 192|Homo sapiens TMEM41B protein protein. 29 7.9
BC035034-1|AAH35034.1| 192|Homo sapiens TMEM41B protein protein. 29 7.9
>EF015898-1|ABM64209.1| 586|Homo sapiens photolyase-like
cryptochrome 1 protein.
Length = 586
Score = 60.9 bits (141), Expect = 3e-09
Identities = 25/38 (65%), Positives = 30/38 (78%)
Frame = +2
Query: 395 GKHTVHWFRKGXRIHDNPALREGIIDAVTFRCVFIIDP 508
G + VHWFRKG R+HDNPAL+E I A T RCV+I+DP
Sbjct: 2 GVNAVHWFRKGLRLHDNPALKECIQGADTIRCVYILDP 39
>D84657-1|BAA12710.1| 586|Homo sapiens photolyase homolog protein.
Length = 586
Score = 60.9 bits (141), Expect = 3e-09
Identities = 25/38 (65%), Positives = 30/38 (78%)
Frame = +2
Query: 395 GKHTVHWFRKGXRIHDNPALREGIIDAVTFRCVFIIDP 508
G + VHWFRKG R+HDNPAL+E I A T RCV+I+DP
Sbjct: 2 GVNAVHWFRKGLRLHDNPALKECIQGADTIRCVYILDP 39
>D83702-1|BAA12068.1| 586|Homo sapiens photolyase protein.
Length = 586
Score = 60.9 bits (141), Expect = 3e-09
Identities = 25/38 (65%), Positives = 30/38 (78%)
Frame = +2
Query: 395 GKHTVHWFRKGXRIHDNPALREGIIDAVTFRCVFIIDP 508
G + VHWFRKG R+HDNPAL+E I A T RCV+I+DP
Sbjct: 2 GVNAVHWFRKGLRLHDNPALKECIQGADTIRCVYILDP 39
>BC030519-1|AAH30519.1| 586|Homo sapiens cryptochrome 1
(photolyase-like) protein.
Length = 586
Score = 60.9 bits (141), Expect = 3e-09
Identities = 25/38 (65%), Positives = 30/38 (78%)
Frame = +2
Query: 395 GKHTVHWFRKGXRIHDNPALREGIIDAVTFRCVFIIDP 508
G + VHWFRKG R+HDNPAL+E I A T RCV+I+DP
Sbjct: 2 GVNAVHWFRKGLRLHDNPALKECIQGADTIRCVYILDP 39
>EF015899-1|ABM64210.1| 593|Homo sapiens photolyase-like
cryptochrome 2 protein.
Length = 593
Score = 54.8 bits (126), Expect = 2e-07
Identities = 25/47 (53%), Positives = 30/47 (63%), Gaps = 3/47 (6%)
Frame = +2
Query: 377 APRRTPGKHT---VHWFRKGXRIHDNPALREGIIDAVTFRCVFIIDP 508
AP PG + VHWFRKG R+HDNPAL + A RCV+I+DP
Sbjct: 12 APAPAPGTDSASSVHWFRKGLRLHDNPALLAAVRGARCVRCVYILDP 58
>BC041814-1|AAH41814.1| 593|Homo sapiens cryptochrome 2
(photolyase-like) protein.
Length = 593
Score = 54.8 bits (126), Expect = 2e-07
Identities = 25/47 (53%), Positives = 30/47 (63%), Gaps = 3/47 (6%)
Frame = +2
Query: 377 APRRTPGKHT---VHWFRKGXRIHDNPALREGIIDAVTFRCVFIIDP 508
AP PG + VHWFRKG R+HDNPAL + A RCV+I+DP
Sbjct: 12 APAPAPGTDSASSVHWFRKGLRLHDNPALLAAVRGARCVRCVYILDP 58
>AB014558-1|BAA31633.1| 589|Homo sapiens KIAA0658 protein protein.
Length = 589
Score = 54.8 bits (126), Expect = 2e-07
Identities = 25/47 (53%), Positives = 30/47 (63%), Gaps = 3/47 (6%)
Frame = +2
Query: 377 APRRTPGKHT---VHWFRKGXRIHDNPALREGIIDAVTFRCVFIIDP 508
AP PG + VHWFRKG R+HDNPAL + A RCV+I+DP
Sbjct: 8 APAPAPGTDSASSVHWFRKGLRLHDNPALLAAVRGARCVRCVYILDP 54
>BC015937-1|AAH15937.1| 479|Homo sapiens poly(A) binding protein
interacting protein 1 protein.
Length = 479
Score = 31.5 bits (68), Expect = 2.0
Identities = 13/27 (48%), Positives = 13/27 (48%)
Frame = +2
Query: 314 PETLPPPSAQAHTPARPXHMSAPRRTP 394
P T PPP AQ PA P S P P
Sbjct: 62 PRTTPPPGAQCEVPASPQRPSRPGALP 88
>AF013758-1|AAC39697.2| 479|Homo sapiens polyadenylate binding
protein-interacting protein-1 protein.
Length = 479
Score = 31.5 bits (68), Expect = 2.0
Identities = 13/27 (48%), Positives = 13/27 (48%)
Frame = +2
Query: 314 PETLPPPSAQAHTPARPXHMSAPRRTP 394
P T PPP AQ PA P S P P
Sbjct: 62 PRTTPPPGAQCEVPASPQRPSRPGALP 88
>AJ012793-1|CAB42642.1| 576|Homo sapiens lymphocyte adaptor protein
(Lnk) protein.
Length = 576
Score = 31.1 bits (67), Expect = 2.6
Identities = 17/45 (37%), Positives = 21/45 (46%)
Frame = +2
Query: 299 KMSAAPETLPPPSAQAHTPARPXHMSAPRRTPGKHTVHWFRKGXR 433
K A+PE P P+A AR AP R PG + FR+ R
Sbjct: 99 KAEASPEPGPGPAAPGLPKARSSEELAPPRPPGPCSFQHFRRSLR 143
>AF055581-1|AAC71695.1| 575|Homo sapiens adaptor protein Lnk
protein.
Length = 575
Score = 31.1 bits (67), Expect = 2.6
Identities = 17/45 (37%), Positives = 21/45 (46%)
Frame = +2
Query: 299 KMSAAPETLPPPSAQAHTPARPXHMSAPRRTPGKHTVHWFRKGXR 433
K A+PE P P+A AR AP R PG + FR+ R
Sbjct: 99 KAEASPEPGPGPAAPGLPKARSSEELAPPRPPGPCSFQHFRRSLR 143
>L32832-1|AAC14462.1| 3703|Homo sapiens zinc finger homeodomain
protein protein.
Length = 3703
Score = 29.9 bits (64), Expect = 6.0
Identities = 10/25 (40%), Positives = 16/25 (64%)
Frame = +2
Query: 314 PETLPPPSAQAHTPARPXHMSAPRR 388
P++ P PS +H P +P H S P++
Sbjct: 2495 PQSSPSPSQLSHLPLKPLHTSTPQQ 2519
>D10250-1|BAA01095.1| 2783|Homo sapiens alpha-fetoprotein enhancer
binding protein protein.
Length = 2783
Score = 29.9 bits (64), Expect = 6.0
Identities = 10/25 (40%), Positives = 16/25 (64%)
Frame = +2
Query: 314 PETLPPPSAQAHTPARPXHMSAPRR 388
P++ P PS +H P +P H S P++
Sbjct: 1581 PQSSPSPSQLSHLPLKPLHTSTPQQ 1605
>AC004943-1|AAC79153.1| 2553|Homo sapiens unknown protein.
Length = 2553
Score = 29.9 bits (64), Expect = 6.0
Identities = 10/25 (40%), Positives = 16/25 (64%)
Frame = +2
Query: 314 PETLPPPSAQAHTPARPXHMSAPRR 388
P++ P PS +H P +P H S P++
Sbjct: 1345 PQSSPSPSQLSHLPLKPLHTSTPQQ 1369
>BC044597-1|AAH44597.1| 192|Homo sapiens TMEM41B protein protein.
Length = 192
Score = 29.5 bits (63), Expect = 7.9
Identities = 15/43 (34%), Positives = 23/43 (53%)
Frame = +1
Query: 211 LLILYF*AFTGYELSLQCYSRMXIGAYRNKNVSSPRNTATTKC 339
+L+ YF + Y+L+ CYSR+ I Y VS +T+ C
Sbjct: 113 VLVAYFATYIFYQLANICYSRLYISQY-TLRVSLSLSTSLISC 154
>BC035034-1|AAH35034.1| 192|Homo sapiens TMEM41B protein protein.
Length = 192
Score = 29.5 bits (63), Expect = 7.9
Identities = 15/43 (34%), Positives = 23/43 (53%)
Frame = +1
Query: 211 LLILYF*AFTGYELSLQCYSRMXIGAYRNKNVSSPRNTATTKC 339
+L+ YF + Y+L+ CYSR+ I Y VS +T+ C
Sbjct: 113 VLVAYFATYIFYQLANICYSRLYISQY-TLRVSLSLSTSLISC 154
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 64,931,802
Number of Sequences: 237096
Number of extensions: 1208458
Number of successful extensions: 4069
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 3708
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4049
length of database: 76,859,062
effective HSP length: 85
effective length of database: 56,705,902
effective search space used: 5273648886
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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