Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060420.seq
         (536 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U21323-11|AAA62556.1|  292|Caenorhabditis elegans Hypothetical p...    32   0.23 
U21323-8|AAA62552.1|  294|Caenorhabditis elegans Hypothetical pr...    32   0.23 
AC024136-6|AAF35965.3|  425|Caenorhabditis elegans Hypothetical ...    30   0.92 
Z68882-6|CAA93107.3|  406|Caenorhabditis elegans Hypothetical pr...    29   2.8  
Z68882-5|CAD89726.1|  407|Caenorhabditis elegans Hypothetical pr...    29   2.8  
Z73102-2|CAB63428.1|  341|Caenorhabditis elegans Hypothetical pr...    27   8.6  
Z73102-1|CAA97419.1|  298|Caenorhabditis elegans Hypothetical pr...    27   8.6  
AL132860-5|CAB60515.1|  798|Caenorhabditis elegans Hypothetical ...    27   8.6  

>U21323-11|AAA62556.1|  292|Caenorhabditis elegans Hypothetical
           protein C45G9.4 protein.
          Length = 292

 Score = 32.3 bits (70), Expect = 0.23
 Identities = 17/50 (34%), Positives = 27/50 (54%), Gaps = 1/50 (2%)
 Frame = +2

Query: 299 KMSAAPETLPPPSAQA-HTPARPXHMSAPRRTPGKHTVHWFRKGXRIHDN 445
           +M  AP TLPPPSA++ H P  P   ++  R   ++T   + K  +  D+
Sbjct: 160 QMVTAPATLPPPSAESKHLPQDPPGDASSPRVQRQYTAEKYSKEDQDDDD 209


>U21323-8|AAA62552.1|  294|Caenorhabditis elegans Hypothetical
           protein C45G9.9 protein.
          Length = 294

 Score = 32.3 bits (70), Expect = 0.23
 Identities = 17/50 (34%), Positives = 27/50 (54%), Gaps = 1/50 (2%)
 Frame = +2

Query: 299 KMSAAPETLPPPSAQA-HTPARPXHMSAPRRTPGKHTVHWFRKGXRIHDN 445
           +M  AP TLPPPSA++ H P  P   ++  R   ++T   + K  +  D+
Sbjct: 162 QMVTAPATLPPPSAESKHLPQDPPGDASSPRVQRQYTAEKYSKEDQDDDD 211


>AC024136-6|AAF35965.3|  425|Caenorhabditis elegans Hypothetical
           protein F54A3.1 protein.
          Length = 425

 Score = 30.3 bits (65), Expect = 0.92
 Identities = 13/32 (40%), Positives = 17/32 (53%)
 Frame = +2

Query: 299 KMSAAPETLPPPSAQAHTPARPXHMSAPRRTP 394
           K+ A+  + PP +  A  P RP    APRR P
Sbjct: 215 KIGASSTSAPPKTTAAGAPKRPSSAVAPRRAP 246


>Z68882-6|CAA93107.3|  406|Caenorhabditis elegans Hypothetical
           protein C47E12.4c protein.
          Length = 406

 Score = 28.7 bits (61), Expect = 2.8
 Identities = 15/27 (55%), Positives = 17/27 (62%)
 Frame = +1

Query: 304 VSSPRNTATTKCSSSHAGQAXSYVRTS 384
           VSS  NTATT  SSS+  Q  +  RTS
Sbjct: 14  VSSSSNTATTSTSSSNTSQKWATSRTS 40


>Z68882-5|CAD89726.1|  407|Caenorhabditis elegans Hypothetical
           protein C47E12.4b protein.
          Length = 407

 Score = 28.7 bits (61), Expect = 2.8
 Identities = 15/27 (55%), Positives = 17/27 (62%)
 Frame = +1

Query: 304 VSSPRNTATTKCSSSHAGQAXSYVRTS 384
           VSS  NTATT  SSS+  Q  +  RTS
Sbjct: 14  VSSSSNTATTSTSSSNTSQKWATSRTS 40


>Z73102-2|CAB63428.1|  341|Caenorhabditis elegans Hypothetical
           protein B0035.1b protein.
          Length = 341

 Score = 27.1 bits (57), Expect = 8.6
 Identities = 13/34 (38%), Positives = 14/34 (41%)
 Frame = +2

Query: 302 MSAAPETLPPPSAQAHTPARPXHMSAPRRTPGKH 403
           M   P   PPPS     P  P  M  PR  PG +
Sbjct: 126 MPPMPSGPPPPSMAYGMPPMPSGMMPPRGMPGAY 159


>Z73102-1|CAA97419.1|  298|Caenorhabditis elegans Hypothetical
           protein B0035.1a protein.
          Length = 298

 Score = 27.1 bits (57), Expect = 8.6
 Identities = 13/34 (38%), Positives = 14/34 (41%)
 Frame = +2

Query: 302 MSAAPETLPPPSAQAHTPARPXHMSAPRRTPGKH 403
           M   P   PPPS     P  P  M  PR  PG +
Sbjct: 126 MPPMPSGPPPPSMAYGMPPMPSGMMPPRGMPGAY 159


>AL132860-5|CAB60515.1|  798|Caenorhabditis elegans Hypothetical
           protein Y56A3A.6 protein.
          Length = 798

 Score = 27.1 bits (57), Expect = 8.6
 Identities = 14/39 (35%), Positives = 20/39 (51%)
 Frame = +2

Query: 308 AAPETLPPPSAQAHTPARPXHMSAPRRTPGKHTVHWFRK 424
           AAP   PPP+A A  P  P     P ++P  + V  +R+
Sbjct: 132 AAPPPPPPPAAAAAAPISPKAAPTP-QSPAPNRVPHYRQ 169


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,259,035
Number of Sequences: 27780
Number of extensions: 184542
Number of successful extensions: 551
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 518
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 548
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1070714938
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)