Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV060420.seq
(536 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g15620.1 68416.m01981 6-4 photolyase (UVR3) identical to 6-4 ... 41 5e-04
At2g47590.1 68415.m05938 photolyase/blue light photoreceptor (PH... 34 0.052
At1g04400.2 68414.m00431 cryptochrome 2 apoprotein (CRY2) / blue... 32 0.28
At1g04400.1 68414.m00430 cryptochrome 2 apoprotein (CRY2) / blue... 32 0.28
At5g24850.1 68418.m02938 cryptochrome dash (CRYD) nearly identic... 31 0.37
At3g11590.1 68416.m01416 expressed protein 29 1.5
At2g35900.1 68415.m04407 expressed protein 29 2.6
At4g08920.1 68417.m01469 cryptochrome 1 apoprotein (CRY1) / flav... 28 3.4
At3g50580.1 68416.m05532 proline-rich family protein contains pr... 28 4.5
At1g12810.1 68414.m01488 proline-rich family protein contains pr... 28 4.5
At5g43670.1 68418.m05337 transport protein, putative similar to ... 27 7.9
At1g56530.1 68414.m06501 hydroxyproline-rich glycoprotein family... 27 7.9
>At3g15620.1 68416.m01981 6-4 photolyase (UVR3) identical to 6-4
photolyase (UVR3) GB:AB003687 [Arabidopsis thaliana]
(Nucleic Acids Res. 26 (2), 638-644 (1998))
Length = 556
Score = 41.1 bits (92), Expect = 5e-04
Identities = 18/38 (47%), Positives = 23/38 (60%)
Frame = +2
Query: 395 GKHTVHWFRKGXRIHDNPALREGIIDAVTFRCVFIIDP 508
G ++ WFRKG R+HDNPAL + VF+IDP
Sbjct: 23 GSGSLIWFRKGLRVHDNPALEYASKGSEFMYPVFVIDP 60
>At2g47590.1 68415.m05938 photolyase/blue light photoreceptor (PHR2)
identical to photolyase/blue light photoreceptor PHR2
[Arabidopsis thaliana] GI:3319288; contains Pfam domain,
PF00875: deoxyribodipyrimidine photolyase
Length = 447
Score = 34.3 bits (75), Expect = 0.052
Identities = 24/74 (32%), Positives = 30/74 (40%), Gaps = 1/74 (1%)
Frame = +2
Query: 290 IETKMSAAPETLPPP-SAQAHTPARPXHMSAPRRTPGKHTVHWFRKGXRIHDNPALREGI 466
I K + A L P S P P +A RR V WFR R+HDN L
Sbjct: 82 ISFKSTIAANPLQSPLSIVPRRPVDPSSAAALRRA----AVVWFRNDLRVHDNECLNSAN 137
Query: 467 IDAVTFRCVFIIDP 508
+ V+ V+ DP
Sbjct: 138 DECVSVLPVYCFDP 151
>At1g04400.2 68414.m00431 cryptochrome 2 apoprotein (CRY2) / blue
light photoreceptor (PHH1) 97% identical to photolysase
(PHH1) (SP:Q96524) and cryptochrome 2 apoprotein (CRY2)
(SP:U43397). ESTs gb|W43661 and gb|Z25638 come from this
gene; contains Pfam profiles PF03441: FAD binding domain
of DNA photolyase and PF00875: deoxyribodipyrimidine
photolyase; identical to cDNA Cvi cryptochrome 2 (CRY2)
GI:18026275
Length = 612
Score = 31.9 bits (69), Expect = 0.28
Identities = 17/37 (45%), Positives = 20/37 (54%)
Frame = +2
Query: 398 KHTVHWFRKGXRIHDNPALREGIIDAVTFRCVFIIDP 508
K T+ WFR+ RI DNPAL + F VFI P
Sbjct: 5 KKTIVWFRRDLRIEDNPALAAAAHEGSVFP-VFIWCP 40
>At1g04400.1 68414.m00430 cryptochrome 2 apoprotein (CRY2) / blue
light photoreceptor (PHH1) 97% identical to photolysase
(PHH1) (SP:Q96524) and cryptochrome 2 apoprotein (CRY2)
(SP:U43397). ESTs gb|W43661 and gb|Z25638 come from this
gene; contains Pfam profiles PF03441: FAD binding domain
of DNA photolyase and PF00875: deoxyribodipyrimidine
photolyase; identical to cDNA Cvi cryptochrome 2 (CRY2)
GI:18026275
Length = 612
Score = 31.9 bits (69), Expect = 0.28
Identities = 17/37 (45%), Positives = 20/37 (54%)
Frame = +2
Query: 398 KHTVHWFRKGXRIHDNPALREGIIDAVTFRCVFIIDP 508
K T+ WFR+ RI DNPAL + F VFI P
Sbjct: 5 KKTIVWFRRDLRIEDNPALAAAAHEGSVFP-VFIWCP 40
>At5g24850.1 68418.m02938 cryptochrome dash (CRYD) nearly identical
to cryptochrome dash [Arabidopsis thaliana] GI:28971609;
similar to Deoxyribodipyrimidine photolyase (DNA
photolyase) (Photoreactivating
enzyme)(SP:Q55081){Synechocystis sp.}
Length = 526
Score = 31.5 bits (68), Expect = 0.37
Identities = 18/51 (35%), Positives = 25/51 (49%)
Frame = +2
Query: 356 ARPXHMSAPRRTPGKHTVHWFRKGXRIHDNPALREGIIDAVTFRCVFIIDP 508
A P S R+ G T+ WFR R+ DN AL + + T V+ +DP
Sbjct: 28 ALPSSSSVKRKGKGV-TILWFRNDLRVLDNDALYKAWSSSDTILPVYCLDP 77
>At3g11590.1 68416.m01416 expressed protein
Length = 622
Score = 29.5 bits (63), Expect = 1.5
Identities = 10/24 (41%), Positives = 15/24 (62%)
Frame = +2
Query: 323 LPPPSAQAHTPARPXHMSAPRRTP 394
LPPP + H+ + P H+S P +P
Sbjct: 135 LPPPRSSVHSGSLPPHLSDPSHSP 158
>At2g35900.1 68415.m04407 expressed protein
Length = 192
Score = 28.7 bits (61), Expect = 2.6
Identities = 12/48 (25%), Positives = 25/48 (52%)
Frame = -3
Query: 516 GEPGSIIKTHRNVTASIMPSRRAGLSWIRNPFRNQCTVCLPGVRRGAD 373
G+P +++++ T + + G S + N F ++ + PG+RR D
Sbjct: 69 GKPSEVVQSNTEHTEEDVTDQMVGRSALPNQFEDKNPLNFPGLRRDVD 116
>At4g08920.1 68417.m01469 cryptochrome 1 apoprotein (CRY1) /
flavin-type blue-light photoreceptor (HY4) contains Pfam
PF03441: FAD binding domain of DNA photolyase; member of
Pfam PF00875: deoxyribodipyrimidine photolyase
superfamily; 99% identical to Cryptochrome 1 apoprotein
(Blue light photoreceptor) (flavin-type blue-light
photoreceptor) (SP:Q43125) [Arabidopsis thaliana]
Length = 681
Score = 28.3 bits (60), Expect = 3.4
Identities = 10/24 (41%), Positives = 15/24 (62%)
Frame = +2
Query: 395 GKHTVHWFRKGXRIHDNPALREGI 466
G ++ WFR+ R+ DNPAL +
Sbjct: 11 GGCSIVWFRRDLRVEDNPALAAAV 34
>At3g50580.1 68416.m05532 proline-rich family protein contains
proline-rich extensin domains, INTERPRO:IPR002965
Length = 265
Score = 27.9 bits (59), Expect = 4.5
Identities = 12/35 (34%), Positives = 17/35 (48%)
Frame = +2
Query: 299 KMSAAPETLPPPSAQAHTPARPXHMSAPRRTPGKH 403
K S + +LPPP+ + P P H S+ P H
Sbjct: 140 KKSPSTPSLPPPTPKKSPPPPPSHHSSSPSNPPHH 174
>At1g12810.1 68414.m01488 proline-rich family protein contains
proline rich extensin domains, INTERPRO:IPR002965
Length = 129
Score = 27.9 bits (59), Expect = 4.5
Identities = 12/23 (52%), Positives = 15/23 (65%)
Frame = +2
Query: 314 PETLPPPSAQAHTPARPXHMSAP 382
PE+ PPP Q+H P P + SAP
Sbjct: 8 PESYPPPGYQSHYPP-PGYPSAP 29
>At5g43670.1 68418.m05337 transport protein, putative similar to
Swiss-Prot:Q15436 protein transport protein Sec23A [Homo
sapiens]
Length = 794
Score = 27.1 bits (57), Expect = 7.9
Identities = 15/39 (38%), Positives = 18/39 (46%)
Frame = -2
Query: 385 SRCGHMXRPGRRVSLSTWWWQCFWGC*HFCFYKLLXTSS 269
SRCG + P RV + W C FCF+K L S
Sbjct: 57 SRCGAVLNPYARVDYQSRIWSC-----PFCFHKNLFPRS 90
>At1g56530.1 68414.m06501 hydroxyproline-rich glycoprotein family
protein contains proline-rich extensin domains,
INTERPRO:IPR002965;
Length = 185
Score = 27.1 bits (57), Expect = 7.9
Identities = 10/20 (50%), Positives = 14/20 (70%)
Frame = +2
Query: 305 SAAPETLPPPSAQAHTPARP 364
S PE+LPPPS ++ +P P
Sbjct: 151 SPPPESLPPPSPESPSPPSP 170
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,393,485
Number of Sequences: 28952
Number of extensions: 162603
Number of successful extensions: 520
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 468
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 512
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 993966856
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -