Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV060419.seq
(564 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC19A8.02 |||transcriptional coactivator |Schizosaccharomyces ... 27 1.4
SPCC70.05c |||serine/threonine protein kinase |Schizosaccharomyc... 27 1.4
SPAC24B11.12c |||P-type ATPase |Schizosaccharomyces pombe|chr 1|... 26 3.3
SPAC56F8.16 |esc1||transcription factor Esc1 |Schizosaccharomyce... 26 4.4
SPBC1709.14 |||peptide N-glycanase |Schizosaccharomyces pombe|ch... 26 4.4
SPAC29B12.07 |sec16||multidomain vesicle coat component Sec16|Sc... 25 5.8
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 25 5.8
SPAC12G12.15 |sif3||Sad1 interacting factor 3|Schizosaccharomyce... 25 5.8
SPAC13D6.02c |byr3||zinc finger protein Byr3|Schizosaccharomyces... 25 7.7
SPCC18B5.03 |wee1||dual specificity protein kinase Wee1|Schizosa... 25 7.7
>SPAC19A8.02 |||transcriptional coactivator |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1213
Score = 27.5 bits (58), Expect = 1.4
Identities = 10/27 (37%), Positives = 18/27 (66%)
Frame = -1
Query: 306 DIFVSISSYLHPRITLKTKFIASKSLK 226
D+ V + +YLHP +T ++ + S +LK
Sbjct: 1082 DLLVGLPTYLHPNVTYPSECLQSFALK 1108
>SPCC70.05c |||serine/threonine protein kinase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 781
Score = 27.5 bits (58), Expect = 1.4
Identities = 16/45 (35%), Positives = 22/45 (48%), Gaps = 1/45 (2%)
Frame = +1
Query: 295 NKNVSS-PRNTATTKCSSSHAGQAYSYVRTSTYAG*THRALVPER 426
+KN SS P + K S H Q+Y +++ S T R VP R
Sbjct: 160 HKNTSSHPSSPVNGKSSDIHKSQSYQHLKNSPPNSRTARKPVPRR 204
>SPAC24B11.12c |||P-type ATPase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1402
Score = 26.2 bits (55), Expect = 3.3
Identities = 9/27 (33%), Positives = 17/27 (62%)
Frame = -2
Query: 434 FAILSGTNARCVYPAYVEVRTYE*AWP 354
+A+L GT C++P ++ + T + WP
Sbjct: 1261 WAVLCGTIVSCLFPKFLFMTTQKLFWP 1287
>SPAC56F8.16 |esc1||transcription factor Esc1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 413
Score = 25.8 bits (54), Expect = 4.4
Identities = 12/25 (48%), Positives = 14/25 (56%)
Frame = +2
Query: 305 SAAPETLPPPSAQAHTPARPTHMSA 379
SAAP + P SA T A P H +A
Sbjct: 86 SAAPASSSPTSATLSTAAHPVHTNA 110
>SPBC1709.14 |||peptide N-glycanase |Schizosaccharomyces pombe|chr
2|||Manual
Length = 333
Score = 25.8 bits (54), Expect = 4.4
Identities = 16/45 (35%), Positives = 23/45 (51%), Gaps = 2/45 (4%)
Frame = -3
Query: 538 LCQRLKSWRTWIYYKDASECDSVYNALSKGGVIVDS--QSFPEPM 410
LC+ L S WI+ + VY+ + V VDS +SF EP+
Sbjct: 173 LCRALGSRARWIWNAEDHVWTEVYSNKQQRWVHVDSGEESFDEPL 217
>SPAC29B12.07 |sec16||multidomain vesicle coat component
Sec16|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1995
Score = 25.4 bits (53), Expect = 5.8
Identities = 10/21 (47%), Positives = 12/21 (57%)
Frame = +2
Query: 305 SAAPETLPPPSAQAHTPARPT 367
S P +LPPPS Q + P T
Sbjct: 639 SNPPRSLPPPSGQVNAPMSQT 659
>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 800
Score = 25.4 bits (53), Expect = 5.8
Identities = 12/36 (33%), Positives = 15/36 (41%)
Frame = +2
Query: 287 LIETKMSAAPETLPPPSAQAHTPARPTHMSAPRRTP 394
L+ T S T PP+ + TP PT TP
Sbjct: 386 LLSTSTSCTTSTSIPPTGNSTTPVTPTVPPTSSSTP 421
>SPAC12G12.15 |sif3||Sad1 interacting factor 3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 510
Score = 25.4 bits (53), Expect = 5.8
Identities = 13/32 (40%), Positives = 16/32 (50%)
Frame = +2
Query: 290 IETKMSAAPETLPPPSAQAHTPARPTHMSAPR 385
I T++S P +PPP T P H S PR
Sbjct: 15 INTRLST-PVHIPPPINSESTRITPQHGSPPR 45
>SPAC13D6.02c |byr3||zinc finger protein Byr3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 179
Score = 25.0 bits (52), Expect = 7.7
Identities = 12/39 (30%), Positives = 18/39 (46%)
Frame = -3
Query: 469 YNALSKGGVIVDSQSFPEPMHGVFTRRTSRCGHMSRPGR 353
Y + G ++ D S P P G + R GH++R R
Sbjct: 61 YACGTAGHLVRDCPSSPNPRQGAECYKCGRVGHIARDCR 99
>SPCC18B5.03 |wee1||dual specificity protein kinase
Wee1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 877
Score = 25.0 bits (52), Expect = 7.7
Identities = 13/42 (30%), Positives = 20/42 (47%)
Frame = -1
Query: 522 RAGEPGSIIKTHRNVTASIMPSRRAGLSWIRNPFRNQCTVCL 397
R P S +KT N + ++R + RNPF + TV +
Sbjct: 465 RFDPPPSAVKTSHNYGLPFLSNQRCPATPTRNPFAFENTVSI 506
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,179,374
Number of Sequences: 5004
Number of extensions: 42468
Number of successful extensions: 139
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 131
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 138
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 238029836
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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