Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV060419.seq
(564 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_01_0783 + 5835517-5835861,5835989-5836060,5836140-5836220,583... 39 0.002
02_04_0317 + 21996324-21996681,21996833-21996859,21997299-219982... 35 0.039
04_04_0072 + 22524974-22525310,22526334-22526552,22526826-225275... 33 0.16
02_05_0008 + 24934917-24935229,24936387-24936608,24936876-249375... 33 0.16
08_01_0150 - 1179147-1179899,1180025-1180579 32 0.36
01_05_0140 - 18528312-18528353,18528426-18529052,18529914-185299... 29 1.9
04_03_0904 + 20717005-20718087 29 2.6
01_02_0111 - 11220179-11220322,11220430-11220497,11220611-112206... 29 2.6
10_08_0936 - 21679002-21679800,21679893-21680116,21681174-216813... 29 3.4
02_03_0077 + 14874273-14874571,14875304-14876150,14876878-148771... 29 3.4
02_02_0503 + 11008475-11008793,11009983-11010140,11011863-110121... 29 3.4
02_01_0003 + 13079-13610,14005-14312,14364-14549,14620-14707,148... 29 3.4
04_04_0715 - 27502581-27502759,27503435-27503567 28 4.5
02_05_1276 + 35397948-35398298,35398937-35401738,35402085-354023... 28 4.5
04_01_0244 - 3194141-3195091,3195301-3195312 28 5.9
03_01_0455 + 3487354-3488090,3489172-3489255,3489942-3490554,349... 28 5.9
02_05_1210 - 34954006-34955412 28 5.9
12_02_0065 - 13109652-13110746,13110843-13111762,13139462-131395... 27 7.8
11_06_0610 - 25449085-25453284 27 7.8
05_03_0034 - 7589272-7589670,7589729-7590007 27 7.8
02_05_0454 - 29135223-29135259,29135709-29135742,29136155-291362... 27 7.8
01_01_1067 + 8403584-8404195,8404532-8404693,8404837-8405346,840... 27 7.8
>02_01_0783 +
5835517-5835861,5835989-5836060,5836140-5836220,
5836293-5836490,5836576-5836647,5836803-5836889,
5836986-5837084,5837191-5837274,5837351-5837437,
5837578-5837649,5837912-5838025,5838127-5838214,
5838293-5838388,5838507-5838694
Length = 560
Score = 39.1 bits (87), Expect = 0.002
Identities = 20/35 (57%), Positives = 24/35 (68%), Gaps = 3/35 (8%)
Frame = +2
Query: 413 WFRKGLRIHDNPAL---REGIIDAVTFRCVFIIDP 508
WFRKGLR+HDNPAL R G A + VF++DP
Sbjct: 18 WFRKGLRVHDNPALDAARRGGAAARLYP-VFVLDP 51
>02_04_0317 +
21996324-21996681,21996833-21996859,21997299-21998227,
21998317-21999162
Length = 719
Score = 35.1 bits (77), Expect = 0.039
Identities = 18/34 (52%), Positives = 21/34 (61%), Gaps = 1/34 (2%)
Frame = +2
Query: 356 ARPTHMS-APRRTPGKHTVHWFRKGLRIHDNPAL 454
A P+ MS A G TV WFR+ LR+ DNPAL
Sbjct: 3 ASPSSMSGAGAGEAGVRTVVWFRRDLRVEDNPAL 36
>04_04_0072 +
22524974-22525310,22526334-22526552,22526826-22527532,
22527664-22528482
Length = 693
Score = 33.1 bits (72), Expect = 0.16
Identities = 13/20 (65%), Positives = 15/20 (75%)
Frame = +2
Query: 395 GKHTVHWFRKGLRIHDNPAL 454
G TV WFR+ LR+ DNPAL
Sbjct: 10 GGRTVVWFRRDLRVEDNPAL 29
>02_05_0008 +
24934917-24935229,24936387-24936608,24936876-24937591,
24937646-24937728,24938448-24938514,24938833-24939228,
24939276-24939318,24939380-24939474,24940287-24940314,
24940636-24940754
Length = 693
Score = 33.1 bits (72), Expect = 0.16
Identities = 18/37 (48%), Positives = 20/37 (54%)
Frame = +2
Query: 398 KHTVHWFRKGLRIHDNPALREGIIDAVTFRCVFIIDP 508
+ TV WFR+ LRI DNPAL D VFI P
Sbjct: 5 ERTVVWFRRDLRIDDNPALASAARDGAVLP-VFIWCP 40
>08_01_0150 - 1179147-1179899,1180025-1180579
Length = 435
Score = 31.9 bits (69), Expect = 0.36
Identities = 14/42 (33%), Positives = 24/42 (57%)
Frame = -3
Query: 547 SICLCQRLKSWRTWIYYKDASECDSVYNALSKGGVIVDSQSF 422
S+C+ +R K+ TW Y+ E S+ +AL ++ S+SF
Sbjct: 304 SVCVIRRSKTIGTWWYHHSVREVPSIQSALKGYNGLIASKSF 345
>01_05_0140 -
18528312-18528353,18528426-18529052,18529914-18529962,
18530086-18530108
Length = 246
Score = 29.5 bits (63), Expect = 1.9
Identities = 13/23 (56%), Positives = 13/23 (56%), Gaps = 2/23 (8%)
Frame = -3
Query: 544 ICLCQRLKSWRTW--IYYKDASE 482
IC C RLK W W I YKD E
Sbjct: 215 ICCCPRLKKWCEWHDIEYKDIQE 237
>04_03_0904 + 20717005-20718087
Length = 360
Score = 29.1 bits (62), Expect = 2.6
Identities = 15/37 (40%), Positives = 17/37 (45%)
Frame = +2
Query: 296 TKMSAAPETLPPPSAQAHTPARPTHMSAPRRTPGKHT 406
T P P P+ AHTP PT+ P TP K T
Sbjct: 88 TPKPTPPPYTPKPTPPAHTPTPPTYTPTP--TPPKPT 122
Score = 27.9 bits (59), Expect = 5.9
Identities = 12/37 (32%), Positives = 18/37 (48%)
Frame = +2
Query: 296 TKMSAAPETLPPPSAQAHTPARPTHMSAPRRTPGKHT 406
T S P+ P P+ TP P++ P+ TP +T
Sbjct: 174 TPPSYKPQPKPTPTPYTPTPTPPSYKPQPKPTPTPYT 210
>01_02_0111 -
11220179-11220322,11220430-11220497,11220611-11220644,
11220735-11220766,11220900-11220959,11221276-11221729
Length = 263
Score = 29.1 bits (62), Expect = 2.6
Identities = 22/54 (40%), Positives = 26/54 (48%), Gaps = 11/54 (20%)
Frame = +1
Query: 400 THRALVPERI-ANPR*PRPSRGH----------YRRCHIPMRLYNRSRFASSSN 528
TH AL+P + NPR P PSR H RR H+ RL R R SS+
Sbjct: 42 THVALLPRPLYTNPRQPPPSRLHRSPPHPPPPPLRRTHVAARLVERVRRRMSSS 95
>10_08_0936 -
21679002-21679800,21679893-21680116,21681174-21681361,
21681505-21682597
Length = 767
Score = 28.7 bits (61), Expect = 3.4
Identities = 11/23 (47%), Positives = 13/23 (56%)
Frame = +2
Query: 326 PPPSAQAHTPARPTHMSAPRRTP 394
PPP Q+H P P + APR P
Sbjct: 113 PPPPTQSHQPPPPVAVRAPRGGP 135
>02_03_0077 +
14874273-14874571,14875304-14876150,14876878-14877147,
14877313-14878065
Length = 722
Score = 28.7 bits (61), Expect = 3.4
Identities = 19/70 (27%), Positives = 30/70 (42%), Gaps = 1/70 (1%)
Frame = -3
Query: 526 LKSWRTWIYYKDASECDSVYNALSKG-GVIVDSQSFPEPMHGVFTRRTSRCGHMSRPGRR 350
++ W I + EC S+ ++KG GVI D +F H GH+ + G
Sbjct: 550 IRQWLESIKFSAPVECTSLITRIAKGLGVISDQIAFISAAHPCIDETYLVQGHILKHGED 609
Query: 349 VSLSTWWWQC 320
SL ++ C
Sbjct: 610 GSLIYFFPGC 619
>02_02_0503 +
11008475-11008793,11009983-11010140,11011863-11012102,
11013502-11013757,11013846-11014057,11014413-11014453,
11014531-11014567
Length = 420
Score = 28.7 bits (61), Expect = 3.4
Identities = 15/30 (50%), Positives = 18/30 (60%)
Frame = +2
Query: 305 SAAPETLPPPSAQAHTPARPTHMSAPRRTP 394
SAAP + PPPS P+ +APRRTP
Sbjct: 25 SAAPASSPPPSP---PPSPAAAAAAPRRTP 51
>02_01_0003 +
13079-13610,14005-14312,14364-14549,14620-14707,
14807-14887,14980-15044,15357-15497,15578-15694,
15995-16237,16326-16383,18127-18224
Length = 638
Score = 28.7 bits (61), Expect = 3.4
Identities = 12/29 (41%), Positives = 18/29 (62%)
Frame = +2
Query: 305 SAAPETLPPPSAQAHTPARPTHMSAPRRT 391
S +P LP P ++H+ P+H APR+T
Sbjct: 185 SQSPFLLPSPRYKSHSHRIPSHPIAPRKT 213
>04_04_0715 - 27502581-27502759,27503435-27503567
Length = 103
Score = 28.3 bits (60), Expect = 4.5
Identities = 6/9 (66%), Positives = 7/9 (77%)
Frame = -3
Query: 334 WWWQCFWGC 308
WWW+C W C
Sbjct: 2 WWWRCVWQC 10
>02_05_1276 +
35397948-35398298,35398937-35401738,35402085-35402306,
35402503-35402562,35402615-35402698,35402740-35402816,
35403147-35403363
Length = 1270
Score = 28.3 bits (60), Expect = 4.5
Identities = 15/53 (28%), Positives = 26/53 (49%), Gaps = 4/53 (7%)
Frame = +2
Query: 257 FSVIRGCK*ELIETKMSAAPETLPPPSAQAHTPARPTH----MSAPRRTPGKH 403
F +++ K + S +P A+++TP +PTH +S P R G+H
Sbjct: 139 FRLLQSSKHAIAPFVKSLVAPAVPSKVARSNTPTKPTHRASSISPPARRGGRH 191
>04_01_0244 - 3194141-3195091,3195301-3195312
Length = 320
Score = 27.9 bits (59), Expect = 5.9
Identities = 12/32 (37%), Positives = 16/32 (50%)
Frame = +2
Query: 299 KMSAAPETLPPPSAQAHTPARPTHMSAPRRTP 394
++ AP PPP+A A P P +AP P
Sbjct: 204 RIQLAPRNPPPPAAPAAPPVPPAVPAAPAPAP 235
>03_01_0455 +
3487354-3488090,3489172-3489255,3489942-3490554,
3491356-3491583,3492270-3492437,3492828-3494587,
3494667-3494670
Length = 1197
Score = 27.9 bits (59), Expect = 5.9
Identities = 12/29 (41%), Positives = 17/29 (58%)
Frame = +2
Query: 320 TLPPPSAQAHTPARPTHMSAPRRTPGKHT 406
T+PPPS+QA T P + +R P + T
Sbjct: 40 TMPPPSSQAATSTPPAAATPLQRPPAQAT 68
>02_05_1210 - 34954006-34955412
Length = 468
Score = 27.9 bits (59), Expect = 5.9
Identities = 11/32 (34%), Positives = 17/32 (53%)
Frame = +2
Query: 287 LIETKMSAAPETLPPPSAQAHTPARPTHMSAP 382
++ T + P+ PPP HTP P+ +S P
Sbjct: 13 VLATGAAQGPKRKPPPKRFVHTPIPPSILSDP 44
>12_02_0065 -
13109652-13110746,13110843-13111762,13139462-13139528,
13139607-13139675,13139877-13140020,13140100-13140171,
13140316-13140387,13140466-13140558,13140655-13140726,
13140809-13140925
Length = 906
Score = 27.5 bits (58), Expect = 7.8
Identities = 18/57 (31%), Positives = 24/57 (42%)
Frame = +1
Query: 307 SSPRNTATTKCSSSHAGQAYSYVRTSTYAG*THRALVPERIANPR*PRPSRGHYRRC 477
+ PR K S+ A + V+ AG PE +ANP R S G +R C
Sbjct: 400 AKPRKQKLCKMSADRQEAAKAEVQKLLRAGVIQEIDHPEWLANPVLVRKSNGKWRMC 456
>11_06_0610 - 25449085-25453284
Length = 1399
Score = 27.5 bits (58), Expect = 7.8
Identities = 13/33 (39%), Positives = 17/33 (51%)
Frame = +2
Query: 308 AAPETLPPPSAQAHTPARPTHMSAPRRTPGKHT 406
A PE+ PPP + +P PT +P P HT
Sbjct: 543 ATPESSPPP--EGKSPPTPTASHSPPPVPEGHT 573
>05_03_0034 - 7589272-7589670,7589729-7590007
Length = 225
Score = 27.5 bits (58), Expect = 7.8
Identities = 17/61 (27%), Positives = 23/61 (37%), Gaps = 6/61 (9%)
Frame = -3
Query: 526 LKSWRTWIYYKDASECDSVYNALS------KGGVIVDSQSFPEPMHGVFTRRTSRCGHMS 365
+ WR + ++D E + + KGGVI S S HG RCG
Sbjct: 163 MAKWRRRVGFQDCRETEENVGGIQDCREVEKGGVISGSSSMVHSHHGGIWPTARRCGQQL 222
Query: 364 R 362
R
Sbjct: 223 R 223
>02_05_0454 -
29135223-29135259,29135709-29135742,29136155-29136233,
29136330-29136623,29136727-29136861,29136956-29137222,
29137309-29137581
Length = 372
Score = 27.5 bits (58), Expect = 7.8
Identities = 12/38 (31%), Positives = 19/38 (50%)
Frame = +1
Query: 283 GAYRNKNVSSPRNTATTKCSSSHAGQAYSYVRTSTYAG 396
GA + V+SP+++ T S+ AGQ Y+ G
Sbjct: 132 GAKKKAEVASPKDSPATSASTVTAGQKTDYIHVRARRG 169
>01_01_1067 +
8403584-8404195,8404532-8404693,8404837-8405346,
8405434-8405493,8405721-8406137,8406576-8407100
Length = 761
Score = 27.5 bits (58), Expect = 7.8
Identities = 12/26 (46%), Positives = 15/26 (57%)
Frame = +2
Query: 290 IETKMSAAPETLPPPSAQAHTPARPT 367
I SAAP+ PPP AQ H +P+
Sbjct: 10 ISPAASAAPQPPPPPVAQRHHQQQPS 35
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,163,596
Number of Sequences: 37544
Number of extensions: 288103
Number of successful extensions: 1301
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 1210
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1297
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1293275844
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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